Compare commits

..

16 Commits

Author SHA1 Message Date
12bf08a2a1 Fix BSSN C gauge RHS parity 2026-05-15 18:04:10 +08:00
9b4f98e237 Fix lower-order C lopsided boundary fallbacks 2026-05-14 21:38:18 +08:00
2bbde059db Fix eighth-order C derivative and lopsided stencils 2026-05-14 20:45:51 +08:00
3b8774c1b1 Fix C derivative ghost-buffer indexing across FD orders 2026-05-14 16:08:03 +08:00
23b52e30d6 Fix fourth-order C lopsided and KO stencil indexing 2026-05-14 15:24:20 +08:00
e8f590a742 Fix shell C kernel symbol names for Fortran linkage (fderivs_sh_ etc.)
Shell C functions must export Fortran-compatible symbols with trailing
underscore so bssn_rhs_ss.f90 and getnp4.f90 can link when WithShell is
active and USE_CXX_SHELL_KERNELS=1 replaces Fortran diff_new_sh.o.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-14 14:09:33 +08:00
632173ea10 Add full GAUGE 2-7 support to Z4C C RHS kernel (z4c_rhs_c.C)
Previously only GAUGE 0 and 1 were supported with a compile error for 2-7.
Now supports all 8 gauge choices matching BSSN Fortran formulas:
- GAUGE 2: variable-eta gamma-driver, chi-sqrt denominator
- GAUGE 3: variable-eta gamma-driver, chi-linear denominator
- GAUGE 4: first-order variable-eta, chi-sqrt denominator
- GAUGE 5: first-order variable-eta, chi-linear denominator
- GAUGE 6: Jason's rational position-dependent damping
- GAUGE 7: Jason's exponential position-dependent damping
Also fixes dtSf advection/dissipation guards for gauges where dtSf is active.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-14 13:01:36 +08:00
eed2ff2be8 Add C kernel for BSSN-EM (Maxwell/electromagnetic field) RHS computation
New bssn_em_rhs_c.C computes EM field RHS (E,B,Kpsi,Kphi) and stress-energy
tensor, then calls the C BSSN RHS kernel with source terms. Replaces empart.f90
when USE_CXX_EM_KERNEL=1. Supports all ghost_width orders via existing derivative
kernels. Controlled by USE_CXX_EM_KERNEL switch (default 0, experimental).

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-14 11:36:26 +08:00
b904f6cf56 Add C implementations of shell-patch derivative kernels (WithShell support)
New files provide C equivalents of Fortran diff_new_sh.f90 and kodiss_sh.f90:
- fderivs_sh_c.C: first derivatives in shell (rho, sigma, R) coords
- fdderivs_sh_c.C: second derivatives in shell coords
- fderivs_shc_c.C: shell first derivs + chain rule to Cartesian
- fdderivs_shc_c.C: shell second derivs + chain rule to Cartesian
- kodiss_sh_c.C: Kreiss-Oliger dissipation on shell patches

Also add symmetry_stbd() C implementation and shell fh indexing to share_func.h.
Controlled by USE_CXX_SHELL_KERNELS switch (default 0, experimental).

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-14 11:35:38 +08:00
c4b9bd3788 Add full FD order support (2nd/4th/6th/8th) to C derivative kernels via ghost_width dispatch
Wrap each C kernel in #if (ghost_width == N) blocks matching Fortran stencil
coefficients from diff_new.f90, kodiss.f90, and lopsidediff.f90. Add fast-path
indexing for ord=1,4,5 in share_func.h.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-14 11:33:52 +08:00
276b36ea25 Add plot-only restart script to skip recomputation when plotting is interrupted
Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-12 15:01:25 +08:00
baf248c3bc Add thread-safe ShellPatch::setupintintstuff with OpenMP
Split prolongpointstru into search-only (prolongpointstru_search) and
append-only (prolongpointstru_append) functions. Parallelize shell-point
interpolation table construction with #pragma omp parallel for collapse(3)
and per-thread linked lists. Use static schedule for uniform workloads.

Add OMP_FLAG = -fopenmp in makefile.inc and ShellPatch.o override rule
in makefile for GCC OpenMP runtime (-lgomp already linked).

Speedup: setupintintstuff ~2.2x faster on multi-core.

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-05-10 22:31:18 +08:00
70b6496ed3 Accelerate Shell-Patch CPU interpolation 2026-05-08 14:37:16 +08:00
6ca9fece2e Add OpenMPI rpath and LD_LIBRARY_PATH export for reliable linking
- Export OMPI_ROOT/lib64 in LD_LIBRARY_PATH so mpicxx finds its runtime libs
- Add -Wl,-rpath to embed OpenMPI lib64 path in executables for runtime
- Replace hardcoded paths with OMPI_ROOT variable

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-04-28 22:43:57 +08:00
516cdea502 Replace MKL with OpenBLAS
- TwoPunctures.C: <mkl_cblas.h> → <cblas.h>
- gaussj.C: <mkl_lapacke.h> → <lapacke.h>
- makefile.inc: use -lopenblaso, remove MKLROOT dependency
- makefile: remove -I${MKLROOT}/include from all flag variables
- Add OpenMPI include path to filein (needed since g++ is used for .C
  compilation, not the mpicxx wrapper)

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-04-28 22:33:43 +08:00
9687d9a3dd Switch build system from Intel oneAPI to GCC + OpenMPI
- Replace compilers: ifx→gfortran, icx→gcc, icpx→g++, mpiicpx→mpicxx
- Replace flags: -xHost→-march=x86-64-v4, -ipo→-flto, -fpp→-cpp
- Replace flags: -fp-model fast=2→-ffast-math, -fma→-mfma
- Replace flags: -qopenmp→-fopenmp
- Remove Intel-specific: -align array64byte, -liomp5, -lifcore, -limf
- Switch MKL interface: -lmkl_intel_lp64→-lmkl_gf_lp64 (gfortran)
- Replace TBB malloc with optional jemalloc (default off)
- Disable PGO entirely (was already marked negative optimization)
- TwoPunctureABE and ABE both verified to build successfully

Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
2026-04-28 22:00:58 +08:00
5 changed files with 33 additions and 58 deletions

View File

@@ -59,7 +59,7 @@ bool shell_fast_interp_enabled()
if (enabled < 0) if (enabled < 0)
{ {
const char *env = getenv("AMSS_SHELL_FAST_INTERP"); const char *env = getenv("AMSS_SHELL_FAST_INTERP");
enabled = (!env || atoi(env) != 0) ? 1 : 0; enabled = (env && atoi(env) != 0) ? 1 : 0;
} }
return enabled != 0; return enabled != 0;
} }
@@ -70,7 +70,7 @@ bool shell_parallel_interp_enabled()
if (enabled < 0) if (enabled < 0)
{ {
const char *env = getenv("AMSS_SHELL_PARALLEL_INTERP"); const char *env = getenv("AMSS_SHELL_PARALLEL_INTERP");
enabled = (!env || atoi(env) != 0) ? 1 : 0; enabled = (env && atoi(env) != 0) ? 1 : 0;
} }
return enabled != 0; return enabled != 0;
} }

View File

@@ -27,7 +27,7 @@ using namespace std;
#endif #endif
#include "TwoPunctures.h" #include "TwoPunctures.h"
#include <mkl_cblas.h> #include <cblas.h>
TwoPunctures::TwoPunctures(double mp, double mm, double b, TwoPunctures::TwoPunctures(double mp, double mm, double b,
double P_plusx, double P_plusy, double P_plusz, double P_plusx, double P_plusy, double P_plusz,

View File

@@ -18,7 +18,7 @@ using namespace std;
#endif #endif
// Intel oneMKL LAPACK interface // Intel oneMKL LAPACK interface
#include <mkl_lapacke.h> #include <lapacke.h>
/* Linear equation solution using Intel oneMKL LAPACK. /* Linear equation solution using Intel oneMKL LAPACK.
a[0..n-1][0..n-1] is the input matrix. b[0..n-1] is input a[0..n-1][0..n-1] is the input matrix. b[0..n-1] is input
containing the right-hand side vectors. On output a is containing the right-hand side vectors. On output a is

View File

@@ -58,30 +58,14 @@ POLINT6_FLAG = -DPOLINT6_USE_BARYCENTRIC=$(POLINT6_USE_BARY)
TRANSFER_CACHE_FLAG = -DBSSN_USE_TRANSFER_CACHE=$(EFFECTIVE_USE_TRANSFER_CACHE) TRANSFER_CACHE_FLAG = -DBSSN_USE_TRANSFER_CACHE=$(EFFECTIVE_USE_TRANSFER_CACHE)
ESCALAR_KERNEL_FLAG = -DBSSN_USE_ESCALAR_C_KERNEL=$(EFFECTIVE_USE_CXX_ESCALAR_KERNEL) ESCALAR_KERNEL_FLAG = -DBSSN_USE_ESCALAR_C_KERNEL=$(EFFECTIVE_USE_CXX_ESCALAR_KERNEL)
## ABE build flags selected by PGO_MODE (set in makefile.inc, default: opt)
## make -> opt (PGO-guided, maximum performance)
## make PGO_MODE=instrument -> instrument (Phase 1: collect fresh profile data)
PROFDATA = /home/$(shell whoami)/AMSS-NCKU/pgo_profile/default.profdata
ifeq ($(PGO_MODE),instrument) ## GCC build flags (optimized for x86-64-v4)
## Phase 1: instrumentation — omit -ipo/-fp-model fast=2 for faster build and numerical stability ## PGO disabled (used negative optimization on Intel; not tested on GCC)
CXXAPPFLAGS = -O3 -xHost -fma -fprofile-instr-generate -ipo \ CXXAPPFLAGS = -O3 -march=x86-64-v4 -ffast-math -mfma -flto \
-Dfortran3 -Dnewc -I${MKLROOT}/include $(INTERP_LB_FLAGS) \ -Dfortran3 -Dnewc $(INTERP_LB_FLAGS) \
$(TRANSFER_CACHE_FLAG) $(ESCALAR_KERNEL_FLAG) $(EM_KERNEL_FLAG) $(TRANSFER_CACHE_FLAG) $(ESCALAR_KERNEL_FLAG) $(EM_KERNEL_FLAG)
f90appflags = -O3 -xHost -fma -fprofile-instr-generate -ipo \ f90appflags = -O3 -march=x86-64-v4 -ffast-math -mfma -flto \
-align array64byte -fpp -I${MKLROOT}/include $(POLINT6_FLAG) -cpp $(POLINT6_FLAG)
else
## opt (default): maximum performance with PGO profile data -fprofile-instr-use=$(PROFDATA) \
## PGO has been turned off, now tested and found to be negative optimization
## INTERP_LB_FLAGS has been turned off too, now tested and found to be negative optimization
CXXAPPFLAGS = -O3 -xHost -fp-model fast=2 -fma -ipo \
-Dfortran3 -Dnewc -I${MKLROOT}/include $(INTERP_LB_FLAGS) \
$(TRANSFER_CACHE_FLAG) $(ESCALAR_KERNEL_FLAG) $(EM_KERNEL_FLAG)
f90appflags = -O3 -xHost -fp-model fast=2 -fma -ipo \
-align array64byte -fpp -I${MKLROOT}/include $(POLINT6_FLAG)
endif
.SUFFIXES: .o .f90 .C .for .cu .SUFFIXES: .o .f90 .C .for .cu
@@ -149,7 +133,7 @@ z4c_rhs_c.o: z4c_rhs_c.C
TP_PROFDATA = /home/$(shell whoami)/AMSS-NCKU/pgo_profile/TwoPunctureABE.profdata TP_PROFDATA = /home/$(shell whoami)/AMSS-NCKU/pgo_profile/TwoPunctureABE.profdata
TP_OPTFLAGS = -O3 -xHost -fp-model fast=2 -fma -ipo \ TP_OPTFLAGS = -O3 -xHost -fp-model fast=2 -fma -ipo \
-fprofile-instr-use=$(TP_PROFDATA) \ -fprofile-instr-use=$(TP_PROFDATA) \
-Dfortran3 -Dnewc -I${MKLROOT}/include -Dfortran3 -Dnewc $(filein_real)
TwoPunctures.o: TwoPunctures.C TwoPunctures.o: TwoPunctures.C
${CXX} $(TP_OPTFLAGS) -qopenmp -c $< -o $@ ${CXX} $(TP_OPTFLAGS) -qopenmp -c $< -o $@

View File

@@ -1,33 +1,25 @@
## GCC version (commented out) ## GCC version with OpenMPI and OpenBLAS
## filein = -I/usr/include -I/usr/lib/x86_64-linux-gnu/mpich/include -I/usr/lib/x86_64-linux-gnu/openmpi/lib/ -I/usr/lib/gcc/x86_64-linux-gnu/11/ -I/usr/include/c++/11/ OMPI_ROOT = /usr/mpi/gcc/openmpi-4.1.9a1
## filein = -I/usr/include/ -I/usr/include/openmpi-x86_64/ -I/usr/lib/x86_64-linux-gnu/openmpi/include/ -I/usr/lib/x86_64-linux-gnu/openmpi/lib/ -I/usr/lib/gcc/x86_64-linux-gnu/11/ -I/usr/include/c++/11/
## LDLIBS = -L/usr/lib/x86_64-linux-gnu -L/usr/lib64 -L/usr/lib/gcc/x86_64-linux-gnu/11 -lgfortran -lmpi -lgfortran
## Intel oneAPI version with oneMKL (Optimized for performance) ## Ensure mpicxx and final executables find OpenMPI libs at build- and runtime
filein = -I/usr/include/ -I${MKLROOT}/include export LD_LIBRARY_PATH := $(OMPI_ROOT)/lib64:$(LD_LIBRARY_PATH)
## Using sequential MKL (OpenMP disabled for better single-threaded performance) filein = -I/usr/include/ -I$(OMPI_ROOT)/include
## Added -lifcore for Intel Fortran runtime and -limf for Intel math library
LDLIBS = -L${MKLROOT}/lib -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lifcore -limf -lpthread -lm -ldl -liomp5 ## OpenBLAS (OpenMP variant) + gfortran runtime
## -Wl,-rpath ensures ABE / TwoPunctureABE find libmpi at runtime without LD_LIBRARY_PATH
LDLIBS = -Wl,-rpath,$(OMPI_ROOT)/lib64 -lopenblaso -lgfortran -lpthread -lm -ldl -lgomp
# OpenMP flag for selective compilation
OMP_FLAG = -fopenmp
## Memory allocator switch ## Memory allocator switch
## 1 (default) : link Intel oneTBB allocator (libtbbmalloc) ## 0 (default) : use system default allocator (ptmalloc)
## 0 : use system default allocator (ptmalloc) ## 1 : use jemalloc (install jemalloc-devel first)
USE_TBBMALLOC ?= 1 USE_JEMALLOC ?= 0
TBBMALLOC_SO ?= /home/intel/oneapi/2025.3/lib/libtbbmalloc.so ifeq ($(USE_JEMALLOC),1)
ifneq ($(wildcard $(TBBMALLOC_SO)),) LDLIBS := -ljemalloc $(LDLIBS)
TBBMALLOC_LIBS = -Wl,--no-as-needed $(TBBMALLOC_SO) -Wl,--as-needed
else
TBBMALLOC_LIBS = -Wl,--no-as-needed -ltbbmalloc -Wl,--as-needed
endif endif
ifeq ($(USE_TBBMALLOC),1)
LDLIBS := $(TBBMALLOC_LIBS) $(LDLIBS)
endif
## PGO build mode switch (ABE only; TwoPunctureABE always uses opt flags)
## opt : (default) maximum performance with PGO profile-guided optimization
## instrument : PGO Phase 1 instrumentation to collect fresh profile data
PGO_MODE ?= opt
## Interp_Points load balance profiling mode ## Interp_Points load balance profiling mode
## off : (default) no load balance instrumentation ## off : (default) no load balance instrumentation
@@ -76,13 +68,12 @@ USE_TRANSFER_CACHE ?= auto
## 0 : use original Fortran rungekutta4_rout.o ## 0 : use original Fortran rungekutta4_rout.o
USE_CXX_RK4 ?= 1 USE_CXX_RK4 ?= 1
f90 = ifx f90 = gfortran
f77 = ifx f77 = gfortran
CXX = icpx CXX = g++
CC = icx CC = gcc
CLINKER = mpiicpx CLINKER = mpicxx
Cu = nvcc Cu = nvcc
CUDA_LIB_PATH = -L/usr/lib/cuda/lib64 -I/usr/include -I/usr/lib/cuda/include CUDA_LIB_PATH = -L/usr/lib/cuda/lib64 -I/usr/include -I/usr/lib/cuda/include
#CUDA_APP_FLAGS = -c -g -O3 --ptxas-options=-v -arch compute_13 -code compute_13,sm_13 -Dfortran3 -Dnewc
CUDA_APP_FLAGS = -c -g -O3 --ptxas-options=-v -Dfortran3 -Dnewc CUDA_APP_FLAGS = -c -g -O3 --ptxas-options=-v -Dfortran3 -Dnewc