Fix potential division by zero in reta_val calculation and enable NaN checks

Added a safety check for the denominator in the reta_val calculation to
prevent division by zero when chi approaches zero (e.g., at far-field
boundaries). Also enabled DEBUG_NAN_CHECK macro to catch invalid inputs early.
Initialized output arrays to zero to prevent uninitialized memory access.

.gitignore

@@ -1,7 +1,6 @@
 __pycache__
 GW150914
 GW150914-origin
-GW150914-mini
 docs
 *.tmp
 

AMSS_NCKU_Input.py

@@ -16,14 +16,12 @@ import numpy
 File_directory   = "GW150914"                    ## output file directory
 Output_directory = "binary_output"               ## binary data file directory
                                                  ## The file directory name should not be too long
-MPI_processes    = 8                             ## number of mpi processes used in the simulation
+MPI_processes    = 48                             ## number of mpi processes used in the simulation
 
 GPU_Calculation  = "no"                          ## Use GPU or not 
                                                  ## (prefer "no" in the current version, because the GPU part may have bugs when integrated in this Python interface)
 CPU_Part         = 1.0
 GPU_Part         = 0.0
-Debug_NaN_Check          = 0                       ## enable NaN checks in compute_rhs_bssn: 0 (off) or 1 (on)
-
 
 #################################################
 

AMSS_NCKU_Input_Mini.py

@@ -1,233 +0,0 @@
-
-#################################################
-##
-## This file provides the input parameters required for numerical relativity.
-## XIAOQU
-## 2024/03/19 --- 2025/09/14
-## Modified for GW150914-mini test case
-##
-#################################################
-
-import numpy    
-
-#################################################
-
-## Setting MPI processes and the output file directory
-
-File_directory   = "GW150914-mini"               ## output file directory
-Output_directory = "binary_output"               ## binary data file directory
-                                                 ## The file directory name should not be too long
-MPI_processes    = 4                             ## number of mpi processes used in the simulation (Reduced for laptop)
-
-GPU_Calculation  = "no"                          ## Use GPU or not 
-                                                 ## (prefer "no" in the current version, because the GPU part may have bugs when integrated in this Python interface)
-CPU_Part         = 1.0
-GPU_Part         = 0.0
-
-#################################################
-
-
-#################################################
-
-## Setting the physical system and numerical method
-
-Symmetry                 = "equatorial-symmetry"   ## Symmetry of System: choose equatorial-symmetry、no-symmetry、octant-symmetry
-Equation_Class           = "BSSN"                  ## Evolution Equation: choose "BSSN", "BSSN-EScalar", "BSSN-EM", "Z4C" 
-                                                   ## If "BSSN-EScalar" is chosen, it is necessary to set other parameters below
-Initial_Data_Method      = "Ansorg-TwoPuncture"    ## initial data method: choose "Ansorg-TwoPuncture", "Lousto-Analytical", "Cao-Analytical", "KerrSchild-Analytical"
-Time_Evolution_Method    = "runge-kutta-45"        ## time evolution method: choose "runge-kutta-45"
-Finite_Diffenence_Method = "4th-order"             ## finite-difference method: choose "2nd-order", "4th-order", "6th-order", "8th-order"
-Debug_NaN_Check          = 0                       ## enable NaN checks in compute_rhs_bssn: 0 (off) or 1 (on)
-
-#################################################
-
-
-#################################################
-
-## Setting the time evolutionary information
-
-Start_Evolution_Time     = 0.0                    ## start evolution time t0
-Final_Evolution_Time     = 100.0                  ## final evolution time t1 (Reduced for quick test)
-Check_Time               = 10.0
-Dump_Time                = 10.0                   ## time inteval dT for dumping binary data
-D2_Dump_Time             = 10.0                   ## dump the ascii data for 2d surface after dT'
-Analysis_Time            = 1.0                    ## dump the puncture position and GW psi4 after dT"
-Evolution_Step_Number    = 10000000               ## stop the calculation after the maximal step number
-Courant_Factor           = 0.5                    ## Courant Factor
-Dissipation              = 0.15                   ## Kreiss-Oliger Dissipation Strength
-
-#################################################
-
-
-#################################################
-
-## Setting the grid structure
-
-basic_grid_set    = "Patch"                          ## grid structure: choose "Patch" or "Shell-Patch"
-grid_center_set   = "Cell"                           ## grid center: chose "Cell" or "Vertex"
-
-grid_level        = 7                                ## total number of AMR grid levels (Reduced from 9)
-static_grid_level = 4                                ## number of AMR static grid levels (Reduced from 5)
-moving_grid_level = grid_level - static_grid_level   ## number of AMR moving grid levels
-
-analysis_level    = 0
-refinement_level  = 3                                ## time refinement start from this grid level
-
-largest_box_xyz_max = [320.0, 320.0, 320.0]          ## scale of the largest box
-                                                     ## not ne cess ary to be cubic for "Patch" grid s tructure
-                                                     ## need to be a cubic box for "Shell-Patch" grid structure
-largest_box_xyz_min = - numpy.array(largest_box_xyz_max)  
-
-static_grid_number = 48                              ## grid points of each static AMR grid (in x direction) (Reduced from 96)
-                                                     ## (grid points in y and z directions are automatically adjusted)
-moving_grid_number = 24                              ## grid points of each moving AMR grid (Reduced from 48)
-shell_grid_number  = [32, 32, 100]                   ## grid points of Shell-Patch grid
-                                                     ## in (phi, theta, r) direction
-devide_factor      = 2.0                             ## resolution between different grid levels dh0/dh1, only support 2.0 now
-                                                     
-
-static_grid_type   = 'Linear'                        ## AMR static grid structure , only supports "Linear"
-moving_grid_type   = 'Linear'                        ## AMR moving grid structure , only supports "Linear"
-
-quarter_sphere_number = 48                           ## grid number of 1/4 s pher ical surface (Reduced from 96)
-                                                     ## (which is needed for evaluating the spherical surface integral)
-
-#################################################
-
-
-#################################################
-
-## Setting the puncture information
-
-puncture_number       = 2                                     
-
-position_BH           = numpy.zeros( (puncture_number, 3) )   
-parameter_BH          = numpy.zeros( (puncture_number, 3) )   
-dimensionless_spin_BH = numpy.zeros( (puncture_number, 3) )   
-momentum_BH           = numpy.zeros( (puncture_number, 3) )   
-
-puncture_data_set     = "Manually"                       ## Method to give Puncture’s positions and momentum
-                                                         ## choose "Manually" or "Automatically-BBH"
-                                                         ## Prefer to choose "Manually", because "Automatically-BBH" is developing now
-
-## initial orbital distance and ellipticity for BBHs system
-## ( needed for "Automatically-BBH" case , not affect the "Manually" case )
-Distance = 10.0
-e0       = 0.0
-
-## black hole parameter (M Q* a*)
-parameter_BH[0] = [ 36.0/(36.0+29.0),  0.0,  +0.31 ]   
-parameter_BH[1] = [ 29.0/(36.0+29.0),  0.0,  -0.46 ]  
-## dimensionless spin in each direction
-dimensionless_spin_BH[0] = [ 0.0,  0.0,  +0.31 ]   
-dimensionless_spin_BH[1] = [ 0.0,  0.0,  -0.46 ]  
-
-## use Brugmann's convention
-##  -----0-----> y
-##   -      +     
-
-#---------------------------------------------
-
-## If puncture_data_set is chosen to be "Manually", it is necessary to set the position and momentum of each puncture manually
-
-## initial position for each puncture
-position_BH[0]  = [  0.0,  10.0*29.0/(36.0+29.0), 0.0 ]  
-position_BH[1]  = [  0.0, -10.0*36.0/(36.0+29.0), 0.0 ] 
-
-## initial mumentum for each puncture
-## (needed for "Manually" case, does not affect the "Automatically-BBH" case)
-momentum_BH[0]  = [ -0.09530152296974252,  -0.00084541526517121,   0.0 ]
-momentum_BH[1]  = [ +0.09530152296974252,  +0.00084541526517121,   0.0 ]
-
-
-#################################################
-
-
-#################################################
-
-## Setting the gravitational wave information
-
-GW_L_max        = 4                      ## maximal L number in gravitational wave
-GW_M_max        = 4                      ## maximal M number in gravitational wave
-Detector_Number = 12                     ## number of dector
-Detector_Rmin   = 50.0                   ## nearest dector distance
-Detector_Rmax   = 160.0                  ## farest dector distance
-
-#################################################
-
-
-#################################################
-
-## Setting the apprent horizon
-
-AHF_Find       = "no"                    ## whether to find the apparent horizon: choose "yes" or "no"
-
-AHF_Find_Every = 24
-AHF_Dump_Time  = 20.0
-
-#################################################
-
-
-#################################################
-
-## Other parameters (testing)
-## Only influence the Equation_Class = "BSSN-EScalar" case
-
-FR_a2     = 3.0        ## f(R) = R + a2 * R^2    
-FR_l2     = 10000.0
-FR_phi0   = 0.00005
-FR_r0     = 120.0
-FR_sigma0 = 8.0
-FR_Choice = 2          ## Choice options: 1 2 3 4 5
-                       ## 1: phi(r) = phi0 * Exp(-(r-r0)**2/sigma0)   
-                       ##    V(r)   = 0
-                       ## 2: phi(r) =  phi0 * a2^2/(1+a2^2)  
-                       ##    V(r)   = Exp(-8*Sqrt(PI/3)*phi(r)) * (1-Exp(4*Sqrt(PI/3)*phi(r)))**2 / (32*PI*a2)
-                       ## 3: Schrodinger-Newton gived by system phi(r) 
-                       ##    V(r)   = Exp(-8*Sqrt(PI/3)*phi(r)) * (1-Exp(4*Sqrt(PI/3)*phi(r)))**2 / (32*PI*a2)
-                       ## 4: phi(r) = phi0 * 0.5 * ( tanh((r+r0)/sigma0) - tanh((r-r0)/sigma0) )  
-                       ##    V(r)   = 0
-                       ##    f(R)   = R + a2*R^2  with a2 = +oo
-                       ## 5: phi(r) = phi0 * Exp(-(r-r0)**2/sigma)   
-                       ##    V(r)   = 0
-
-#################################################
-
-
-#################################################
-
-## Other parameters (testing)
-## (please do not change if not necessary)
-
-boundary_choice = "BAM-choice"     ## Sommerfeld boundary condition : choose "BAM-choice" or "Shibata-choice" 
-                                   ## prefer "BAM-choice"
-
-gauge_choice  = 0                  ## gauge choice
-                                   ## 0: B^i gauge
-                                   ## 1: David's puncture gauge
-                                   ## 2: MB B^i gauge               
-                                   ## 3: RIT B^i gauge
-                                   ## 4: MB beta gauge 
-                                   ## 5: RIT beta gauge 
-                                   ## 6: MGB1 B^i gauge
-                                   ## 7: MGB2 B^i gauge
-                                   ## prefer 0 or 1
-                                   
-tetrad_type  = 2                   ## tetradtype 
-                                   ##  v:r; u: phi; w: theta
-                                   ##      v^a = (x,y,z)
-                                   ## 0: orthonormal order: v,u,w
-                                   ##    v^a = (x,y,z)   
-                                   ##    m = (phi - i theta)/sqrt(2) 
-                                   ##    following Frans, Eq.(8) of  PRD 75, 124018(2007)
-                                   ## 1: orthonormal order: w,u,v
-                                   ##    m = (theta + i phi)/sqrt(2) 
-                                   ##    following Sperhake, Eq.(3.2) of  PRD 85, 124062(2012)    
-                                   ## 2: orthonormal order: v,u,w
-                                   ##    v_a = (x,y,z)
-                                   ##    m = (phi - i theta)/sqrt(2) 
-                                   ##    following Frans, Eq.(8) of  PRD 75, 124018(2007)
-                                   ## this version recommend set to 2
-                                   ## prefer 2
-                                   
-#################################################

AMSS_NCKU_MiniProgram.py

@@ -1,224 +0,0 @@
-##################################################################
-##
-## AMSS-NCKU Numerical Relativity Mini Test Program
-## Author: Assistant (based on Xiaoqu's code)
-## 2026/01/20
-##
-## This script runs a scaled-down version of the GW150914 test case
-## suitable for laptop testing.
-##
-##################################################################
-
-import os
-import shutil
-import sys
-import time
-
-# --- Context Manager for Input File Swapping ---
-class InputFileSwapper:
-    def __init__(self, mini_file="AMSS_NCKU_Input_Mini.py", target_file="AMSS_NCKU_Input.py"):
-        self.mini_file = mini_file
-        self.target_file = target_file
-        self.backup_file = target_file + ".bak"
-        self.swapped = False
-
-    def __enter__(self):
-        print(f"[MiniProgram] Swapping {self.target_file} with {self.mini_file}...")
-        if os.path.exists(self.target_file):
-            shutil.move(self.target_file, self.backup_file)
-        shutil.copy(self.mini_file, self.target_file)
-        self.swapped = True
-        return self
-
-    def __exit__(self, exc_type, exc_value, traceback):
-        if self.swapped:
-            print(f"[MiniProgram] Restoring original {self.target_file}...")
-            os.remove(self.target_file)
-            if os.path.exists(self.backup_file):
-                shutil.move(self.backup_file, self.target_file)
-
-def main():
-    # Use the swapper to ensure all imported modules see the mini configuration
-    with InputFileSwapper():
-        
-        # Import modules AFTER swapping input file
-        try:
-            import AMSS_NCKU_Input as input_data
-            import print_information
-            import setup
-            import numerical_grid
-            import generate_macrodef
-            import makefile_and_run
-            import generate_TwoPuncture_input
-            import renew_puncture_parameter
-            import plot_xiaoqu
-            import plot_GW_strain_amplitude_xiaoqu
-        except ImportError as e:
-            print(f"Error importing modules: {e}")
-            return
-
-        print_information.print_program_introduction()
-        
-        print("\n" + "#"*60)
-        print(" RUNNING MINI TEST CASE: GW150914-mini")
-        print("#"*60 + "\n")
-
-        # --- Directory Setup ---
-        File_directory = os.path.join(input_data.File_directory)
-        
-        if os.path.exists(File_directory):
-            print(f" Output directory '{File_directory}' exists. Removing for mini test...")
-            shutil.rmtree(File_directory, ignore_errors=True)
-        
-        os.mkdir(File_directory)
-        shutil.copy("AMSS_NCKU_Input.py", File_directory) # Copies the current (mini) input
-
-        output_directory = os.path.join(File_directory, "AMSS_NCKU_output")
-        os.mkdir(output_directory)
-
-        binary_results_directory = os.path.join(output_directory, input_data.Output_directory)
-        os.mkdir(binary_results_directory)
-
-        figure_directory = os.path.join(File_directory, "figure")
-        os.mkdir(figure_directory)
-
-        print(" Output directories generated.\n")
-
-        # --- Setup and Input Generation ---
-        setup.print_input_data(File_directory)
-        setup.generate_AMSSNCKU_input()
-        setup.print_puncture_information()
-
-        print("\n Generating AMSS-NCKU input parfile...")
-        numerical_grid.append_AMSSNCKU_cgh_input()
-        
-        print("\n Plotting initial grid...")
-        numerical_grid.plot_initial_grid()
-
-        print("\n Generating macro files...")
-        generate_macrodef.generate_macrodef_h()
-        generate_macrodef.generate_macrodef_fh()
-        
-        # --- Compilation Preparation ---
-        print("\n Preparing to compile and run...")
-        
-        AMSS_NCKU_source_path = "AMSS_NCKU_source"
-        AMSS_NCKU_source_copy = os.path.join(File_directory, "AMSS_NCKU_source_copy")
-
-        if not os.path.exists(AMSS_NCKU_source_path):
-             print(" Error: AMSS_NCKU_source not found! Please run in the project root.")
-             return
-
-        shutil.copytree(AMSS_NCKU_source_path, AMSS_NCKU_source_copy)
-        
-        macrodef_h_path  = os.path.join(File_directory, "macrodef.h") 
-        macrodef_fh_path = os.path.join(File_directory, "macrodef.fh") 
-
-        shutil.copy2(macrodef_h_path,  AMSS_NCKU_source_copy)
-        shutil.copy2(macrodef_fh_path, AMSS_NCKU_source_copy)
-
-        # --- Compilation ---
-        cwd = os.getcwd()
-        os.chdir(AMSS_NCKU_source_copy)
-        
-        print(" Compiling ABE...")
-        makefile_and_run.makefile_ABE()
-        
-        if (input_data.Initial_Data_Method == "Ansorg-TwoPuncture" ): 
-            print(" Compiling TwoPunctureABE...")
-            makefile_and_run.makefile_TwoPunctureABE()
-            
-        os.chdir(cwd)
-
-        # --- Copy Executables ---
-        if (input_data.GPU_Calculation == "no"):
-            ABE_file = os.path.join(AMSS_NCKU_source_copy, "ABE")
-        else:
-            ABE_file = os.path.join(AMSS_NCKU_source_copy, "ABEGPU")
-            
-        if not os.path.exists(ABE_file):
-            print(" Error: ABE executable compilation failed.")
-            return
-            
-        shutil.copy2(ABE_file, output_directory)
-
-        TwoPuncture_file = os.path.join(AMSS_NCKU_source_copy, "TwoPunctureABE")
-        if (input_data.Initial_Data_Method == "Ansorg-TwoPuncture" ):
-            if not os.path.exists(TwoPuncture_file):
-                print(" Error: TwoPunctureABE compilation failed.")
-                return
-            shutil.copy2(TwoPuncture_file, output_directory)
-
-        # --- Execution ---
-        start_time = time.time()
-        
-        if (input_data.Initial_Data_Method == "Ansorg-TwoPuncture" ):
-             print("\n Generating TwoPuncture input...")
-             generate_TwoPuncture_input.generate_AMSSNCKU_TwoPuncture_input()
-             
-             AMSS_NCKU_TwoPuncture_inputfile = 'AMSS-NCKU-TwoPuncture.input'
-             AMSS_NCKU_TwoPuncture_inputfile_path = os.path.join( File_directory, AMSS_NCKU_TwoPuncture_inputfile )
-             shutil.copy2( AMSS_NCKU_TwoPuncture_inputfile_path, os.path.join(output_directory, 'TwoPunctureinput.par') )
-             
-             print(" Running TwoPunctureABE...")
-             os.chdir(output_directory)
-             makefile_and_run.run_TwoPunctureABE()
-             os.chdir(cwd)
-
-        # Update Puncture Parameter
-        renew_puncture_parameter.append_AMSSNCKU_BSSN_input(File_directory, output_directory)
-        
-        AMSS_NCKU_inputfile = 'AMSS-NCKU.input'
-        AMSS_NCKU_inputfile_path = os.path.join(File_directory, AMSS_NCKU_inputfile)
-        shutil.copy2( AMSS_NCKU_inputfile_path, os.path.join(output_directory, 'input.par') )
-        
-        print("\n Input files ready. Launching ABE...")
-        
-        os.chdir(output_directory)
-        makefile_and_run.run_ABE()
-        os.chdir(cwd)
-        
-        end_time = time.time()
-        elapsed_time = end_time - start_time
-        
-        # --- Post-processing ---
-        print("\n Copying output files for inspection...")
-        AMSS_NCKU_error_file_path = os.path.join(binary_results_directory, "setting.par")
-        if os.path.exists(AMSS_NCKU_error_file_path):
-            shutil.copy( AMSS_NCKU_error_file_path, os.path.join(output_directory, "AMSSNCKU_setting_parameter") )
-
-        AMSS_NCKU_error_file_path = os.path.join(binary_results_directory, "Error.log")
-        if os.path.exists(AMSS_NCKU_error_file_path):
-            shutil.copy( AMSS_NCKU_error_file_path, os.path.join(output_directory, "Error.log") )
-
-        for fname in ["bssn_BH.dat", "bssn_ADMQs.dat", "bssn_psi4.dat", "bssn_constraint.dat"]:
-            fpath = os.path.join(binary_results_directory, fname)
-            if os.path.exists(fpath):
-                shutil.copy(fpath, os.path.join(output_directory, fname))
-
-        # --- Plotting ---
-        print("\n Plotting results...")
-        try:
-            plot_xiaoqu.generate_puncture_orbit_plot(   binary_results_directory, figure_directory )
-            plot_xiaoqu.generate_puncture_orbit_plot3D( binary_results_directory, figure_directory )
-            plot_xiaoqu.generate_puncture_distence_plot( binary_results_directory, figure_directory )
-            
-            for i in range(input_data.Detector_Number):
-                plot_xiaoqu.generate_gravitational_wave_psi4_plot( binary_results_directory, figure_directory, i )
-                plot_GW_strain_amplitude_xiaoqu.generate_gravitational_wave_amplitude_plot( binary_results_directory, figure_directory, i )
-
-            for i in range(input_data.Detector_Number):
-                plot_xiaoqu.generate_ADMmass_plot( binary_results_directory, figure_directory, i )
-
-            for i in range(input_data.grid_level):
-                plot_xiaoqu.generate_constraint_check_plot( binary_results_directory, figure_directory, i )
-                
-            plot_xiaoqu.generate_binary_data_plot( binary_results_directory, figure_directory )
-        except Exception as e:
-            print(f"Warning: Plotting failed: {e}")
-
-        print(f"\n Program Cost = {elapsed_time:.2f} Seconds \n")
-        print(" AMSS-NCKU-Python simulation finished (Mini Test).\n")
-
-if __name__ == "__main__":
-    main()

AMSS_NCKU_source/Parallel.C

@@ -313,7 +313,7 @@ MyList<Block> *Parallel::distribute(MyList<Patch> *PatchLIST, int cpusize, int i
 
   int split_size, min_size, block_size = 0;
 
-  int min_width = Mymax(2 * ghost_width + 2, buffer_width + 2);
+  int min_width = 2 * Mymax(ghost_width, buffer_width);
   int nxyz[dim], mmin_width[dim], min_shape[dim];
 
   MyList<Patch> *PLi = PatchLIST;
@@ -641,7 +641,7 @@ MyList<Block> *Parallel::distribute(MyList<Patch> *PatchLIST, int cpusize, int i
 
   int split_size, min_size, block_size = 0;
 
-  int min_width = Mymax(2 * ghost_width + 2, buffer_width + 2);
+  int min_width = 2 * Mymax(ghost_width, buffer_width);
   int nxyz[dim], mmin_width[dim], min_shape[dim];
 
   MyList<Patch> *PLi = PatchLIST;

AMSS_NCKU_source/diff_new.f90

@@ -1939,309 +1939,6 @@
   return
 
   end subroutine fddyz
-  subroutine fderivs_batch4(ex,f1,f2,f3,f4, &
-                            f1x,f1y,f1z,f2x,f2y,f2z,f3x,f3y,f3z,f4x,f4y,f4z, &
-                            X,Y,Z,SYM1,SYM2,SYM3,symmetry,onoff)
-  implicit none
-
-  integer,                               intent(in ):: ex(1:3),symmetry,onoff
-  real*8,  dimension(ex(1),ex(2),ex(3)), intent(in ):: f1,f2,f3,f4
-  real*8,  dimension(ex(1),ex(2),ex(3)), intent(out):: f1x,f1y,f1z
-  real*8,  dimension(ex(1),ex(2),ex(3)), intent(out):: f2x,f2y,f2z
-  real*8,  dimension(ex(1),ex(2),ex(3)), intent(out):: f3x,f3y,f3z
-  real*8,  dimension(ex(1),ex(2),ex(3)), intent(out):: f4x,f4y,f4z
-  real*8,                                intent(in) :: X(ex(1)),Y(ex(2)),Z(ex(3))
-  real*8,                                intent(in ):: SYM1,SYM2,SYM3
-
-!~~~~~~ other variables
-
-  real*8 :: dX,dY,dZ
-  real*8,dimension(-1:ex(1),-1:ex(2),-1:ex(3)) :: fh1,fh2,fh3,fh4
-  real*8, dimension(3) :: SoA
-  integer :: imin,jmin,kmin,imax,jmax,kmax,i,j,k
-  real*8 :: d12dx,d12dy,d12dz,d2dx,d2dy,d2dz
-  integer, parameter :: NO_SYMM = 0, EQ_SYMM = 1, OCTANT = 2
-  real*8,  parameter :: ZEO=0.d0,ONE=1.d0
-  real*8,  parameter :: TWO=2.d0,EIT=8.d0
-  real*8,  parameter :: F12=1.2d1
-
-  dX = X(2)-X(1)
-  dY = Y(2)-Y(1)
-  dZ = Z(2)-Z(1)
-
-  imax = ex(1)
-  jmax = ex(2)
-  kmax = ex(3)
-
-  imin = 1
-  jmin = 1
-  kmin = 1
-  if(Symmetry > NO_SYMM .and. dabs(Z(1)) < dZ) kmin = -1
-  if(Symmetry > EQ_SYMM .and. dabs(X(1)) < dX) imin = -1
-  if(Symmetry > EQ_SYMM .and. dabs(Y(1)) < dY) jmin = -1
-
-  SoA(1) = SYM1
-  SoA(2) = SYM2
-  SoA(3) = SYM3
-
-  call symmetry_bd(2,ex,f1,fh1,SoA)
-  call symmetry_bd(2,ex,f2,fh2,SoA)
-  call symmetry_bd(2,ex,f3,fh3,SoA)
-  call symmetry_bd(2,ex,f4,fh4,SoA)
-
-  d12dx = ONE/F12/dX
-  d12dy = ONE/F12/dY
-  d12dz = ONE/F12/dZ
-
-  d2dx = ONE/TWO/dX
-  d2dy = ONE/TWO/dY
-  d2dz = ONE/TWO/dZ
-
-  f1x = ZEO; f1y = ZEO; f1z = ZEO
-  f2x = ZEO; f2y = ZEO; f2z = ZEO
-  f3x = ZEO; f3y = ZEO; f3z = ZEO
-  f4x = ZEO; f4y = ZEO; f4z = ZEO
-
-  do k=1,ex(3)-1
-  do j=1,ex(2)-1
-  do i=1,ex(1)-1
-   if(i+2 <= imax .and. i-2 >= imin .and. &
-      j+2 <= jmax .and. j-2 >= jmin .and. &
-      k+2 <= kmax .and. k-2 >= kmin) then
-      f1x(i,j,k)=d12dx*(fh1(i-2,j,k)-EIT*fh1(i-1,j,k)+EIT*fh1(i+1,j,k)-fh1(i+2,j,k))
-      f1y(i,j,k)=d12dy*(fh1(i,j-2,k)-EIT*fh1(i,j-1,k)+EIT*fh1(i,j+1,k)-fh1(i,j+2,k))
-      f1z(i,j,k)=d12dz*(fh1(i,j,k-2)-EIT*fh1(i,j,k-1)+EIT*fh1(i,j,k+1)-fh1(i,j,k+2))
-
-      f2x(i,j,k)=d12dx*(fh2(i-2,j,k)-EIT*fh2(i-1,j,k)+EIT*fh2(i+1,j,k)-fh2(i+2,j,k))
-      f2y(i,j,k)=d12dy*(fh2(i,j-2,k)-EIT*fh2(i,j-1,k)+EIT*fh2(i,j+1,k)-fh2(i,j+2,k))
-      f2z(i,j,k)=d12dz*(fh2(i,j,k-2)-EIT*fh2(i,j,k-1)+EIT*fh2(i,j,k+1)-fh2(i,j,k+2))
-
-      f3x(i,j,k)=d12dx*(fh3(i-2,j,k)-EIT*fh3(i-1,j,k)+EIT*fh3(i+1,j,k)-fh3(i+2,j,k))
-      f3y(i,j,k)=d12dy*(fh3(i,j-2,k)-EIT*fh3(i,j-1,k)+EIT*fh3(i,j+1,k)-fh3(i,j+2,k))
-      f3z(i,j,k)=d12dz*(fh3(i,j,k-2)-EIT*fh3(i,j,k-1)+EIT*fh3(i,j,k+1)-fh3(i,j,k+2))
-
-      f4x(i,j,k)=d12dx*(fh4(i-2,j,k)-EIT*fh4(i-1,j,k)+EIT*fh4(i+1,j,k)-fh4(i+2,j,k))
-      f4y(i,j,k)=d12dy*(fh4(i,j-2,k)-EIT*fh4(i,j-1,k)+EIT*fh4(i,j+1,k)-fh4(i,j+2,k))
-      f4z(i,j,k)=d12dz*(fh4(i,j,k-2)-EIT*fh4(i,j,k-1)+EIT*fh4(i,j,k+1)-fh4(i,j,k+2))
-   elseif(i+1 <= imax .and. i-1 >= imin .and. &
-          j+1 <= jmax .and. j-1 >= jmin .and. &
-          k+1 <= kmax .and. k-1 >= kmin) then
-      f1x(i,j,k)=d2dx*(-fh1(i-1,j,k)+fh1(i+1,j,k))
-      f1y(i,j,k)=d2dy*(-fh1(i,j-1,k)+fh1(i,j+1,k))
-      f1z(i,j,k)=d2dz*(-fh1(i,j,k-1)+fh1(i,j,k+1))
-
-      f2x(i,j,k)=d2dx*(-fh2(i-1,j,k)+fh2(i+1,j,k))
-      f2y(i,j,k)=d2dy*(-fh2(i,j-1,k)+fh2(i,j+1,k))
-      f2z(i,j,k)=d2dz*(-fh2(i,j,k-1)+fh2(i,j,k+1))
-
-      f3x(i,j,k)=d2dx*(-fh3(i-1,j,k)+fh3(i+1,j,k))
-      f3y(i,j,k)=d2dy*(-fh3(i,j-1,k)+fh3(i,j+1,k))
-      f3z(i,j,k)=d2dz*(-fh3(i,j,k-1)+fh3(i,j,k+1))
-
-      f4x(i,j,k)=d2dx*(-fh4(i-1,j,k)+fh4(i+1,j,k))
-      f4y(i,j,k)=d2dy*(-fh4(i,j-1,k)+fh4(i,j+1,k))
-      f4z(i,j,k)=d2dz*(-fh4(i,j,k-1)+fh4(i,j,k+1))
-   endif
-  enddo
-  enddo
-  enddo
-
-  return
-
-  end subroutine fderivs_batch4
-!-----------------------------------------------------------------------------
-! batch first derivatives (3 fields), same symmetry setup
-!-----------------------------------------------------------------------------
-  subroutine fderivs_batch3(ex,f1,f2,f3, &
-                            f1x,f1y,f1z,f2x,f2y,f2z,f3x,f3y,f3z, &
-                            X,Y,Z,SYM1,SYM2,SYM3,symmetry,onoff)
-  implicit none
-
-  integer,                               intent(in ):: ex(1:3),symmetry,onoff
-  real*8,  dimension(ex(1),ex(2),ex(3)), intent(in ):: f1,f2,f3
-  real*8,  dimension(ex(1),ex(2),ex(3)), intent(out):: f1x,f1y,f1z
-  real*8,  dimension(ex(1),ex(2),ex(3)), intent(out):: f2x,f2y,f2z
-  real*8,  dimension(ex(1),ex(2),ex(3)), intent(out):: f3x,f3y,f3z
-  real*8,                                intent(in) :: X(ex(1)),Y(ex(2)),Z(ex(3))
-  real*8,                                intent(in ):: SYM1,SYM2,SYM3
-
-!~~~~~~ other variables
-
-  real*8 :: dX,dY,dZ
-  real*8,dimension(-1:ex(1),-1:ex(2),-1:ex(3)) :: fh1,fh2,fh3
-  real*8, dimension(3) :: SoA
-  integer :: imin,jmin,kmin,imax,jmax,kmax,i,j,k
-  real*8 :: d12dx,d12dy,d12dz,d2dx,d2dy,d2dz
-  integer, parameter :: NO_SYMM = 0, EQ_SYMM = 1, OCTANT = 2
-  real*8,  parameter :: ZEO=0.d0,ONE=1.d0
-  real*8,  parameter :: TWO=2.d0,EIT=8.d0
-  real*8,  parameter :: F12=1.2d1
-
-  dX = X(2)-X(1)
-  dY = Y(2)-Y(1)
-  dZ = Z(2)-Z(1)
-
-  imax = ex(1)
-  jmax = ex(2)
-  kmax = ex(3)
-
-  imin = 1
-  jmin = 1
-  kmin = 1
-  if(Symmetry > NO_SYMM .and. dabs(Z(1)) < dZ) kmin = -1
-  if(Symmetry > EQ_SYMM .and. dabs(X(1)) < dX) imin = -1
-  if(Symmetry > EQ_SYMM .and. dabs(Y(1)) < dY) jmin = -1
-
-  SoA(1) = SYM1
-  SoA(2) = SYM2
-  SoA(3) = SYM3
-
-  call symmetry_bd(2,ex,f1,fh1,SoA)
-  call symmetry_bd(2,ex,f2,fh2,SoA)
-  call symmetry_bd(2,ex,f3,fh3,SoA)
-
-  d12dx = ONE/F12/dX
-  d12dy = ONE/F12/dY
-  d12dz = ONE/F12/dZ
-
-  d2dx = ONE/TWO/dX
-  d2dy = ONE/TWO/dY
-  d2dz = ONE/TWO/dZ
-
-  f1x = ZEO; f1y = ZEO; f1z = ZEO
-  f2x = ZEO; f2y = ZEO; f2z = ZEO
-  f3x = ZEO; f3y = ZEO; f3z = ZEO
-
-  do k=1,ex(3)-1
-  do j=1,ex(2)-1
-  do i=1,ex(1)-1
-   if(i+2 <= imax .and. i-2 >= imin .and. &
-      j+2 <= jmax .and. j-2 >= jmin .and. &
-      k+2 <= kmax .and. k-2 >= kmin) then
-      f1x(i,j,k)=d12dx*(fh1(i-2,j,k)-EIT*fh1(i-1,j,k)+EIT*fh1(i+1,j,k)-fh1(i+2,j,k))
-      f1y(i,j,k)=d12dy*(fh1(i,j-2,k)-EIT*fh1(i,j-1,k)+EIT*fh1(i,j+1,k)-fh1(i,j+2,k))
-      f1z(i,j,k)=d12dz*(fh1(i,j,k-2)-EIT*fh1(i,j,k-1)+EIT*fh1(i,j,k+1)-fh1(i,j,k+2))
-
-      f2x(i,j,k)=d12dx*(fh2(i-2,j,k)-EIT*fh2(i-1,j,k)+EIT*fh2(i+1,j,k)-fh2(i+2,j,k))
-      f2y(i,j,k)=d12dy*(fh2(i,j-2,k)-EIT*fh2(i,j-1,k)+EIT*fh2(i,j+1,k)-fh2(i,j+2,k))
-      f2z(i,j,k)=d12dz*(fh2(i,j,k-2)-EIT*fh2(i,j,k-1)+EIT*fh2(i,j,k+1)-fh2(i,j,k+2))
-
-      f3x(i,j,k)=d12dx*(fh3(i-2,j,k)-EIT*fh3(i-1,j,k)+EIT*fh3(i+1,j,k)-fh3(i+2,j,k))
-      f3y(i,j,k)=d12dy*(fh3(i,j-2,k)-EIT*fh3(i,j-1,k)+EIT*fh3(i,j+1,k)-fh3(i,j+2,k))
-      f3z(i,j,k)=d12dz*(fh3(i,j,k-2)-EIT*fh3(i,j,k-1)+EIT*fh3(i,j,k+1)-fh3(i,j,k+2))
-   elseif(i+1 <= imax .and. i-1 >= imin .and. &
-          j+1 <= jmax .and. j-1 >= jmin .and. &
-          k+1 <= kmax .and. k-1 >= kmin) then
-      f1x(i,j,k)=d2dx*(-fh1(i-1,j,k)+fh1(i+1,j,k))
-      f1y(i,j,k)=d2dy*(-fh1(i,j-1,k)+fh1(i,j+1,k))
-      f1z(i,j,k)=d2dz*(-fh1(i,j,k-1)+fh1(i,j,k+1))
-
-      f2x(i,j,k)=d2dx*(-fh2(i-1,j,k)+fh2(i+1,j,k))
-      f2y(i,j,k)=d2dy*(-fh2(i,j-1,k)+fh2(i,j+1,k))
-      f2z(i,j,k)=d2dz*(-fh2(i,j,k-1)+fh2(i,j,k+1))
-
-      f3x(i,j,k)=d2dx*(-fh3(i-1,j,k)+fh3(i+1,j,k))
-      f3y(i,j,k)=d2dy*(-fh3(i,j-1,k)+fh3(i,j+1,k))
-      f3z(i,j,k)=d2dz*(-fh3(i,j,k-1)+fh3(i,j,k+1))
-   endif
-  enddo
-  enddo
-  enddo
-
-  return
-
-  end subroutine fderivs_batch3
-!-----------------------------------------------------------------------------
-! batch first derivatives (2 fields), same symmetry setup
-!-----------------------------------------------------------------------------
-  subroutine fderivs_batch2(ex,f1,f2, &
-                            f1x,f1y,f1z,f2x,f2y,f2z, &
-                            X,Y,Z,SYM1,SYM2,SYM3,symmetry,onoff)
-  implicit none
-
-  integer,                               intent(in ):: ex(1:3),symmetry,onoff
-  real*8,  dimension(ex(1),ex(2),ex(3)), intent(in ):: f1,f2
-  real*8,  dimension(ex(1),ex(2),ex(3)), intent(out):: f1x,f1y,f1z
-  real*8,  dimension(ex(1),ex(2),ex(3)), intent(out):: f2x,f2y,f2z
-  real*8,                                intent(in) :: X(ex(1)),Y(ex(2)),Z(ex(3))
-  real*8,                                intent(in ):: SYM1,SYM2,SYM3
-
-!~~~~~~ other variables
-
-  real*8 :: dX,dY,dZ
-  real*8,dimension(-1:ex(1),-1:ex(2),-1:ex(3)) :: fh1,fh2
-  real*8, dimension(3) :: SoA
-  integer :: imin,jmin,kmin,imax,jmax,kmax,i,j,k
-  real*8 :: d12dx,d12dy,d12dz,d2dx,d2dy,d2dz
-  integer, parameter :: NO_SYMM = 0, EQ_SYMM = 1, OCTANT = 2
-  real*8,  parameter :: ZEO=0.d0,ONE=1.d0
-  real*8,  parameter :: TWO=2.d0,EIT=8.d0
-  real*8,  parameter :: F12=1.2d1
-
-  dX = X(2)-X(1)
-  dY = Y(2)-Y(1)
-  dZ = Z(2)-Z(1)
-
-  imax = ex(1)
-  jmax = ex(2)
-  kmax = ex(3)
-
-  imin = 1
-  jmin = 1
-  kmin = 1
-  if(Symmetry > NO_SYMM .and. dabs(Z(1)) < dZ) kmin = -1
-  if(Symmetry > EQ_SYMM .and. dabs(X(1)) < dX) imin = -1
-  if(Symmetry > EQ_SYMM .and. dabs(Y(1)) < dY) jmin = -1
-
-  SoA(1) = SYM1
-  SoA(2) = SYM2
-  SoA(3) = SYM3
-
-  call symmetry_bd(2,ex,f1,fh1,SoA)
-  call symmetry_bd(2,ex,f2,fh2,SoA)
-
-  d12dx = ONE/F12/dX
-  d12dy = ONE/F12/dY
-  d12dz = ONE/F12/dZ
-
-  d2dx = ONE/TWO/dX
-  d2dy = ONE/TWO/dY
-  d2dz = ONE/TWO/dZ
-
-  f1x = ZEO; f1y = ZEO; f1z = ZEO
-  f2x = ZEO; f2y = ZEO; f2z = ZEO
-
-  do k=1,ex(3)-1
-  do j=1,ex(2)-1
-  do i=1,ex(1)-1
-   if(i+2 <= imax .and. i-2 >= imin .and. &
-      j+2 <= jmax .and. j-2 >= jmin .and. &
-      k+2 <= kmax .and. k-2 >= kmin) then
-      f1x(i,j,k)=d12dx*(fh1(i-2,j,k)-EIT*fh1(i-1,j,k)+EIT*fh1(i+1,j,k)-fh1(i+2,j,k))
-      f1y(i,j,k)=d12dy*(fh1(i,j-2,k)-EIT*fh1(i,j-1,k)+EIT*fh1(i,j+1,k)-fh1(i,j+2,k))
-      f1z(i,j,k)=d12dz*(fh1(i,j,k-2)-EIT*fh1(i,j,k-1)+EIT*fh1(i,j,k+1)-fh1(i,j,k+2))
-
-      f2x(i,j,k)=d12dx*(fh2(i-2,j,k)-EIT*fh2(i-1,j,k)+EIT*fh2(i+1,j,k)-fh2(i+2,j,k))
-      f2y(i,j,k)=d12dy*(fh2(i,j-2,k)-EIT*fh2(i,j-1,k)+EIT*fh2(i,j+1,k)-fh2(i,j+2,k))
-      f2z(i,j,k)=d12dz*(fh2(i,j,k-2)-EIT*fh2(i,j,k-1)+EIT*fh2(i,j,k+1)-fh2(i,j,k+2))
-   elseif(i+1 <= imax .and. i-1 >= imin .and. &
-          j+1 <= jmax .and. j-1 >= jmin .and. &
-          k+1 <= kmax .and. k-1 >= kmin) then
-      f1x(i,j,k)=d2dx*(-fh1(i-1,j,k)+fh1(i+1,j,k))
-      f1y(i,j,k)=d2dy*(-fh1(i,j-1,k)+fh1(i,j+1,k))
-      f1z(i,j,k)=d2dz*(-fh1(i,j,k-1)+fh1(i,j,k+1))
-
-      f2x(i,j,k)=d2dx*(-fh2(i-1,j,k)+fh2(i+1,j,k))
-      f2y(i,j,k)=d2dy*(-fh2(i,j-1,k)+fh2(i,j+1,k))
-      f2z(i,j,k)=d2dz*(-fh2(i,j,k-1)+fh2(i,j,k+1))
-   endif
-  enddo
-  enddo
-  enddo
-
-  return
-
-  end subroutine fderivs_batch2
 
 #elif (ghost_width == 4)
 ! sixth order code
@@ -2380,9 +2077,6 @@
 
   end subroutine fderivs
 !-----------------------------------------------------------------------------
-! batch first derivatives (4 fields), same symmetry setup
-!-----------------------------------------------------------------------------
-!-----------------------------------------------------------------------------
 !
 ! single derivatives dx
 !

AMSS_NCKU_source/makefile

@@ -34,7 +34,7 @@ C++FILES_GPU = ABE.o Ansorg.o Block.o misc.o monitor.o Parallel.o MPatch.o var.o
 
 F90FILES = enforce_algebra.o fmisc.o initial_puncture.o prolongrestrict.o\
 	   prolongrestrict_cell.o prolongrestrict_vertex.o\
-	   rungekutta4_rout.o bssn_rhs.o diff_new.o kodiss.o kodiss_sh.o\
+	   rungekutta4_rout.o bssn_rhs_opt.o bssn_rhs.o bssn_rhs_legacy.o diff_new.o kodiss.o kodiss_sh.o\
 	   lopsidediff.o sommerfeld_rout.o getnp4.o diff_new_sh.o\
 	   shellfunctions.o bssn_rhs_ss.o Set_Rho_ADM.o\
            getnp4EScalar.o bssnEScalar_rhs.o bssn_constraint.o ricci_gamma.o\

AMSS_NCKU_source/makefile.inc

@@ -7,8 +7,9 @@
 filein  = -I/usr/include/ -I${MKLROOT}/include
 
 ## Using sequential MKL (OpenMP disabled for better single-threaded performance)
-## Added -lifcore for Intel Fortran runtime and -limf for Intel math library
+LDLIBS  = -L/usr/lib/x86_64-linux-gnu -L/usr/lib64 -lifcore -limf -lmpi \
-LDLIBS  = -L${MKLROOT}/lib -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lifcore -limf -lpthread -lm -ldl
+          -L${MKLROOT}/lib -lmkl_intel_lp64 -lmkl_sequential -lmkl_core \
+          -lpthread -lm -ldl
 
 ## Aggressive optimization flags:
 ## -O3: Maximum optimization

generate_macrodef.py

@@ -253,19 +253,7 @@ def generate_macrodef_h():
     # Define macro buffer_width
     # number of buffer points for mesh-refinement interfaces
     
-    # Calculate ghost_width based on Finite_Diffenence_Method to optimize buffer_width
+    print( "#define buffer_width 6",                     file=file1 )
-    if ( input_data.Finite_Diffenence_Method == "2nd-order" ):
-        gw = 2
-    elif ( input_data.Finite_Diffenence_Method == "4th-order" ):
-        gw = 3
-    elif ( input_data.Finite_Diffenence_Method == "6th-order" ):
-        gw = 4
-    elif ( input_data.Finite_Diffenence_Method == "8th-order" ):
-        gw = 5
-    else:
-        gw = 5 # Default conservative value
-        
-    print( f"#define buffer_width {gw + 1}",      file=file1 )
     print(                                               file=file1 )
 
     # Define macro SC_width as buffer_width
@@ -404,17 +392,6 @@ def generate_macrodef_fh():
         print( "# Finite_Difference_Method #define ghost_width setting error!!!",   file=file1 )
         print(                                                   file=file1 )
 
-    # Define macro DEBUG_NAN_CHECK
-    # 0: off (default), 1: on
-
-    debug_nan_check = getattr(input_data, "Debug_NaN_Check", 0)
-    if debug_nan_check:
-        print( "#define DEBUG_NAN_CHECK 1", file=file1 )
-        print(                             file=file1 )
-    else:
-        print( "#define DEBUG_NAN_CHECK 0", file=file1 )
-        print(                             file=file1 )
-
     # Whether to use a shell-patch grid
     # use shell or not
 
@@ -537,9 +514,6 @@ def generate_macrodef_fh():
     print( "    6th order: 4",                                                                      file=file1 )
     print( "    8th order: 5",                                                                      file=file1 )
     print(                                                                                          file=file1 )
-    print( "define DEBUG_NAN_CHECK",                                                                file=file1 )
-    print( "    0: off (default), 1: on",                                                           file=file1 )
-    print(                                                                                          file=file1 )
     print( "define WithShell",                                                                      file=file1 )
     print( "    use shell or not",                                                                  file=file1 )
     print(                                                                                          file=file1 )

inputfile_example/AMSS_NCKU_Input.py

@@ -36,7 +36,6 @@ Equation_Class           = "BSSN"                  ## Evolution Equation: choose
 Initial_Data_Method      = "Ansorg-TwoPuncture"    ## initial data method: choose "Ansorg-TwoPuncture", "Lousto-Analytical", "Cao-Analytical", "KerrSchild-Analytical"
 Time_Evolution_Method    = "runge-kutta-45"        ## time evolution method: choose "runge-kutta-45"
 Finite_Diffenence_Method = "4th-order"             ## finite-difference method: choose "2nd-order", "4th-order", "6th-order", "8th-order"
-Debug_NaN_Check          = 0                       ## enable NaN checks in compute_rhs_bssn: 0 (off) or 1 (on)
 
 #################################################
 

makefile_and_run.py

@@ -15,13 +15,12 @@ import subprocess
 ## taskset ensures all child processes inherit the CPU affinity mask
 ## This forces make and all compiler processes to use only nohz_full cores (4-55, 60-111)
 ## Format: taskset -c 4-55,60-111 ensures processes only run on these cores
-#NUMACTL_CPU_BIND = "taskset -c 4-55,60-111"
+NUMACTL_CPU_BIND = "taskset -c 4-55,60-111"
-NUMACTL_CPU_BIND = ""
 
 ## Build parallelism configuration
 ## Use nohz_full cores (4-55, 60-111) for compilation: 52 + 52 = 104 cores
 ## Set make -j to utilize available cores for faster builds
-BUILD_JOBS = 14
+BUILD_JOBS = 104
 
 
 ##################################################################