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5 Commits

Author SHA1 Message Date
ed89bc029b Fix potential division by zero in reta_val calculation and enable NaN checks
Added a safety check for the denominator in the reta_val calculation to
prevent division by zero when chi approaches zero (e.g., at far-field
boundaries). Also enabled DEBUG_NAN_CHECK macro to catch invalid inputs early.
Initialized output arrays to zero to prevent uninitialized memory access.
2026-01-19 20:29:48 +08:00
19274e93d1 Fix boundary handling in bssn_rhs_opt.f90 to prevent NaNs
Refactored calc_derivs and calc_dderivs to include correct boundary
handling logic matching the legacy code. Implemented fallback to 2nd
order derivatives when near boundaries where 4th order stencils cannot
be used. Added logic to initialize output arrays to zero to avoid
uninitialized memory access.
2026-01-19 20:03:22 +08:00
ae1a474cca Fix compilation errors and complete logic in BSSN RHS optimization 2026-01-19 19:22:52 +08:00
cbb8fb3a87 patched last commit 2026-01-19 17:14:28 +08:00
4472d89a9f Optimize bssn_rhs calculation with cache blocking and vectorization
- Implemented cache blocking (BLK=8) in bssn_rhs_opt.f90 to improve L1/L2 cache hit rate.
- Introduced bssn_rhs_opt.f90 module with vectorized derivative and physics kernels.
- Renamed original implementation to bssn_rhs_legacy.f90 for fallback.
- Updated bssn_rhs.f90 to act as a dispatcher, using the optimized path for ghost_width=3.
- Updated makefile to include new source files.
- Added DEBUG_NAN_CHECK macro to optionally disable NaN checks in production.
2026-01-19 16:39:24 +08:00
30 changed files with 3534 additions and 4278 deletions

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@@ -16,7 +16,7 @@ import numpy
File_directory = "GW150914" ## output file directory
Output_directory = "binary_output" ## binary data file directory
## The file directory name should not be too long
MPI_processes = 64 ## number of mpi processes used in the simulation
MPI_processes = 48 ## number of mpi processes used in the simulation
GPU_Calculation = "no" ## Use GPU or not
## (prefer "no" in the current version, because the GPU part may have bugs when integrated in this Python interface)

View File

@@ -8,14 +8,6 @@
##
##################################################################
## Guard against re-execution by multiprocessing child processes.
## Without this, using 'spawn' or 'forkserver' context would cause every
## worker to re-run the entire script, spawning exponentially more
## workers (fork bomb).
if __name__ != '__main__':
import sys as _sys
_sys.exit(0)
##################################################################
@@ -432,31 +424,26 @@ print(
import plot_xiaoqu
import plot_GW_strain_amplitude_xiaoqu
from parallel_plot_helper import run_plot_tasks_parallel
plot_tasks = []
## Plot black hole trajectory
plot_tasks.append( ( plot_xiaoqu.generate_puncture_orbit_plot, (binary_results_directory, figure_directory) ) )
plot_tasks.append( ( plot_xiaoqu.generate_puncture_orbit_plot3D, (binary_results_directory, figure_directory) ) )
plot_xiaoqu.generate_puncture_orbit_plot( binary_results_directory, figure_directory )
plot_xiaoqu.generate_puncture_orbit_plot3D( binary_results_directory, figure_directory )
## Plot black hole separation vs. time
plot_tasks.append( ( plot_xiaoqu.generate_puncture_distence_plot, (binary_results_directory, figure_directory) ) )
plot_xiaoqu.generate_puncture_distence_plot( binary_results_directory, figure_directory )
## Plot gravitational waveforms (psi4 and strain amplitude)
for i in range(input_data.Detector_Number):
plot_tasks.append( ( plot_xiaoqu.generate_gravitational_wave_psi4_plot, (binary_results_directory, figure_directory, i) ) )
plot_tasks.append( ( plot_GW_strain_amplitude_xiaoqu.generate_gravitational_wave_amplitude_plot, (binary_results_directory, figure_directory, i) ) )
plot_xiaoqu.generate_gravitational_wave_psi4_plot( binary_results_directory, figure_directory, i )
plot_GW_strain_amplitude_xiaoqu.generate_gravitational_wave_amplitude_plot( binary_results_directory, figure_directory, i )
## Plot ADM mass evolution
for i in range(input_data.Detector_Number):
plot_tasks.append( ( plot_xiaoqu.generate_ADMmass_plot, (binary_results_directory, figure_directory, i) ) )
plot_xiaoqu.generate_ADMmass_plot( binary_results_directory, figure_directory, i )
## Plot Hamiltonian constraint violation over time
for i in range(input_data.grid_level):
plot_tasks.append( ( plot_xiaoqu.generate_constraint_check_plot, (binary_results_directory, figure_directory, i) ) )
run_plot_tasks_parallel(plot_tasks)
plot_xiaoqu.generate_constraint_check_plot( binary_results_directory, figure_directory, i )
## Plot stored binary data
plot_xiaoqu.generate_binary_data_plot( binary_results_directory, figure_directory )

View File

@@ -341,9 +341,8 @@ void Patch::Interp_Points(MyList<var> *VarList,
double *Shellf, int Symmetry)
{
// NOTE: we do not Synchnize variables here, make sure of that before calling this routine
int myrank, nprocs;
int myrank;
MPI_Comm_rank(MPI_COMM_WORLD, &myrank);
MPI_Comm_size(MPI_COMM_WORLD, &nprocs);
int ordn = 2 * ghost_width;
MyList<var> *varl;
@@ -355,18 +354,24 @@ void Patch::Interp_Points(MyList<var> *VarList,
varl = varl->next;
}
memset(Shellf, 0, sizeof(double) * NN * num_var);
double *shellf;
shellf = new double[NN * num_var];
memset(shellf, 0, sizeof(double) * NN * num_var);
// owner_rank[j] records which MPI rank owns point j
// All ranks traverse the same block list so they all agree on ownership
int *owner_rank;
owner_rank = new int[NN];
for (int j = 0; j < NN; j++)
owner_rank[j] = -1;
// we use weight to monitor code, later some day we can move it for optimization
int *weight;
weight = new int[NN];
memset(weight, 0, sizeof(int) * NN);
double *DH, *llb, *uub;
DH = new double[dim];
double DH[dim], llb[dim], uub[dim];
for (int i = 0; i < dim; i++)
{
DH[i] = getdX(i);
}
llb = new double[dim];
uub = new double[dim];
for (int j = 0; j < NN; j++) // run along points
{
@@ -398,6 +403,12 @@ void Patch::Interp_Points(MyList<var> *VarList,
bool flag = true;
for (int i = 0; i < dim; i++)
{
// NOTE: our dividing structure is (exclude ghost)
// -1 0
// 1 2
// so (0,1) does not belong to any part for vertex structure
// here we put (0,0.5) to left part and (0.5,1) to right part
// BUT for cell structure the bbox is (-1.5,0.5) and (0.5,2.5), there is no missing region at all
#ifdef Vertex
#ifdef Cell
#error Both Cell and Vertex are defined
@@ -422,7 +433,6 @@ void Patch::Interp_Points(MyList<var> *VarList,
if (flag)
{
notfind = false;
owner_rank[j] = BP->rank;
if (myrank == BP->rank)
{
//---> interpolation
@@ -430,11 +440,14 @@ void Patch::Interp_Points(MyList<var> *VarList,
int k = 0;
while (varl) // run along variables
{
f_global_interp(BP->shape, BP->X[0], BP->X[1], BP->X[2], BP->fgfs[varl->data->sgfn], Shellf[j * num_var + k],
// shellf[j*num_var+k] = Parallel::global_interp(dim,BP->shape,BP->X,BP->fgfs[varl->data->sgfn],
// pox,ordn,varl->data->SoA,Symmetry);
f_global_interp(BP->shape, BP->X[0], BP->X[1], BP->X[2], BP->fgfs[varl->data->sgfn], shellf[j * num_var + k],
pox[0], pox[1], pox[2], ordn, varl->data->SoA, Symmetry);
varl = varl->next;
k++;
}
weight[j] = 1;
}
}
if (Bp == ble)
@@ -443,327 +456,103 @@ void Patch::Interp_Points(MyList<var> *VarList,
}
}
// Replace MPI_Allreduce with per-owner MPI_Bcast:
// Group consecutive points by owner rank and broadcast each group.
// Since each point's data is non-zero only on the owner rank,
// Bcast from owner is equivalent to Allreduce(MPI_SUM) but much cheaper.
MPI_Allreduce(shellf, Shellf, NN * num_var, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
int *Weight;
Weight = new int[NN];
MPI_Allreduce(weight, Weight, NN, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
// misc::tillherecheck("print me");
for (int i = 0; i < NN; i++)
{
int j = 0;
while (j < NN)
if (Weight[i] > 1)
{
int cur_owner = owner_rank[j];
if (cur_owner < 0)
{
if (myrank == 0)
{
cout << "ERROR: Patch::Interp_Points fails to find point (";
for (int d = 0; d < dim; d++)
{
cout << XX[d][j];
if (d < dim - 1)
cout << ",";
else
cout << ")";
}
cout << " on Patch (";
for (int d = 0; d < dim; d++)
{
cout << bbox[d] << "+" << lli[d] * DH[d];
if (d < dim - 1)
cout << ",";
else
cout << ")--";
}
cout << "(";
for (int d = 0; d < dim; d++)
{
cout << bbox[dim + d] << "-" << uui[d] * DH[d];
if (d < dim - 1)
cout << ",";
else
cout << ")" << endl;
}
MPI_Abort(MPI_COMM_WORLD, 1);
}
j++;
continue;
}
// Find contiguous run of points with the same owner
int jstart = j;
while (j < NN && owner_rank[j] == cur_owner)
j++;
int count = (j - jstart) * num_var;
MPI_Bcast(Shellf + jstart * num_var, count, MPI_DOUBLE, cur_owner, MPI_COMM_WORLD);
if (myrank == 0)
cout << "WARNING: Patch::Interp_Points meets multiple weight" << endl;
for (int j = 0; j < num_var; j++)
Shellf[j + i * num_var] = Shellf[j + i * num_var] / Weight[i];
}
}
delete[] owner_rank;
}
void Patch::Interp_Points(MyList<var> *VarList,
int NN, double **XX,
double *Shellf, int Symmetry,
int Nmin_consumer, int Nmax_consumer)
{
// Targeted point-to-point overload: each owner sends each point only to
// the one rank that needs it for integration (consumer), reducing
// communication volume by ~nprocs times compared to the Bcast version.
int myrank, nprocs;
MPI_Comm_rank(MPI_COMM_WORLD, &myrank);
MPI_Comm_size(MPI_COMM_WORLD, &nprocs);
int ordn = 2 * ghost_width;
MyList<var> *varl;
int num_var = 0;
varl = VarList;
while (varl)
{
num_var++;
varl = varl->next;
}
memset(Shellf, 0, sizeof(double) * NN * num_var);
// owner_rank[j] records which MPI rank owns point j
int *owner_rank;
owner_rank = new int[NN];
for (int j = 0; j < NN; j++)
owner_rank[j] = -1;
double DH[dim], llb[dim], uub[dim];
for (int i = 0; i < dim; i++)
DH[i] = getdX(i);
// --- Interpolation phase (identical to original) ---
for (int j = 0; j < NN; j++)
{
double pox[dim];
for (int i = 0; i < dim; i++)
{
pox[i] = XX[i][j];
if (myrank == 0 && (XX[i][j] < bbox[i] + lli[i] * DH[i] || XX[i][j] > bbox[dim + i] - uui[i] * DH[i]))
{
cout << "Patch::Interp_Points: point (";
for (int k = 0; k < dim; k++)
{
cout << XX[k][j];
if (k < dim - 1)
cout << ",";
else
cout << ") is out of current Patch." << endl;
}
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
MyList<Block> *Bp = blb;
bool notfind = true;
while (notfind && Bp)
{
Block *BP = Bp->data;
bool flag = true;
for (int i = 0; i < dim; i++)
{
#ifdef Vertex
#ifdef Cell
#error Both Cell and Vertex are defined
#endif
llb[i] = (feq(BP->bbox[i], bbox[i], DH[i] / 2)) ? BP->bbox[i] + lli[i] * DH[i] : BP->bbox[i] + (ghost_width - 0.5) * DH[i];
uub[i] = (feq(BP->bbox[dim + i], bbox[dim + i], DH[i] / 2)) ? BP->bbox[dim + i] - uui[i] * DH[i] : BP->bbox[dim + i] - (ghost_width - 0.5) * DH[i];
#else
#ifdef Cell
llb[i] = (feq(BP->bbox[i], bbox[i], DH[i] / 2)) ? BP->bbox[i] + lli[i] * DH[i] : BP->bbox[i] + ghost_width * DH[i];
uub[i] = (feq(BP->bbox[dim + i], bbox[dim + i], DH[i] / 2)) ? BP->bbox[dim + i] - uui[i] * DH[i] : BP->bbox[dim + i] - ghost_width * DH[i];
#else
#error Not define Vertex nor Cell
#endif
#endif
if (XX[i][j] - llb[i] < -DH[i] / 2 || XX[i][j] - uub[i] > DH[i] / 2)
{
flag = false;
break;
}
}
if (flag)
{
notfind = false;
owner_rank[j] = BP->rank;
if (myrank == BP->rank)
{
varl = VarList;
int k = 0;
while (varl)
{
f_global_interp(BP->shape, BP->X[0], BP->X[1], BP->X[2], BP->fgfs[varl->data->sgfn], Shellf[j * num_var + k],
pox[0], pox[1], pox[2], ordn, varl->data->SoA, Symmetry);
varl = varl->next;
k++;
}
}
}
if (Bp == ble)
break;
Bp = Bp->next;
}
}
// --- Error check for unfound points ---
for (int j = 0; j < NN; j++)
{
if (owner_rank[j] < 0 && myrank == 0)
else if (Weight[i] == 0 && myrank == 0)
{
cout << "ERROR: Patch::Interp_Points fails to find point (";
for (int d = 0; d < dim; d++)
for (int j = 0; j < dim; j++)
{
cout << XX[d][j];
if (d < dim - 1)
cout << XX[j][i];
if (j < dim - 1)
cout << ",";
else
cout << ")";
}
cout << " on Patch (";
for (int d = 0; d < dim; d++)
for (int j = 0; j < dim; j++)
{
cout << bbox[d] << "+" << lli[d] * DH[d];
if (d < dim - 1)
cout << bbox[j] << "+" << lli[j] * getdX(j);
if (j < dim - 1)
cout << ",";
else
cout << ")--";
}
cout << "(";
for (int d = 0; d < dim; d++)
for (int j = 0; j < dim; j++)
{
cout << bbox[dim + d] << "-" << uui[d] * DH[d];
if (d < dim - 1)
cout << bbox[dim + j] << "-" << uui[j] * getdX(j);
if (j < dim - 1)
cout << ",";
else
cout << ")" << endl;
}
#if 0
checkBlock();
#else
cout << "splited domains:" << endl;
{
MyList<Block> *Bp = blb;
while (Bp)
{
Block *BP = Bp->data;
for (int i = 0; i < dim; i++)
{
#ifdef Vertex
#ifdef Cell
#error Both Cell and Vertex are defined
#endif
llb[i] = (feq(BP->bbox[i], bbox[i], DH[i] / 2)) ? BP->bbox[i] + lli[i] * DH[i] : BP->bbox[i] + (ghost_width - 0.5) * DH[i];
uub[i] = (feq(BP->bbox[dim + i], bbox[dim + i], DH[i] / 2)) ? BP->bbox[dim + i] - uui[i] * DH[i] : BP->bbox[dim + i] - (ghost_width - 0.5) * DH[i];
#else
#ifdef Cell
llb[i] = (feq(BP->bbox[i], bbox[i], DH[i] / 2)) ? BP->bbox[i] + lli[i] * DH[i] : BP->bbox[i] + ghost_width * DH[i];
uub[i] = (feq(BP->bbox[dim + i], bbox[dim + i], DH[i] / 2)) ? BP->bbox[dim + i] - uui[i] * DH[i] : BP->bbox[dim + i] - ghost_width * DH[i];
#else
#error Not define Vertex nor Cell
#endif
#endif
}
cout << "(";
for (int j = 0; j < dim; j++)
{
cout << llb[j] << ":" << uub[j];
if (j < dim - 1)
cout << ",";
else
cout << ")" << endl;
}
if (Bp == ble)
break;
Bp = Bp->next;
}
}
#endif
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
// --- Targeted point-to-point communication phase ---
// Compute consumer_rank[j] using the same deterministic formula as surface_integral
int *consumer_rank = new int[NN];
{
int mp = NN / nprocs;
int Lp = NN - nprocs * mp;
for (int j = 0; j < NN; j++)
{
if (j < Lp * (mp + 1))
consumer_rank[j] = j / (mp + 1);
else
consumer_rank[j] = Lp + (j - Lp * (mp + 1)) / mp;
}
}
// Count sends and recvs per rank
int *send_count = new int[nprocs];
int *recv_count = new int[nprocs];
memset(send_count, 0, sizeof(int) * nprocs);
memset(recv_count, 0, sizeof(int) * nprocs);
for (int j = 0; j < NN; j++)
{
int own = owner_rank[j];
int con = consumer_rank[j];
if (own == con)
continue; // local — no communication needed
if (own == myrank)
send_count[con]++;
if (con == myrank)
recv_count[own]++;
}
// Build send buffers: for each destination rank, pack (index, data) pairs
// Each entry: 1 int (point index j) + num_var doubles
int total_send = 0, total_recv = 0;
int *send_offset = new int[nprocs];
int *recv_offset = new int[nprocs];
for (int r = 0; r < nprocs; r++)
{
send_offset[r] = total_send;
total_send += send_count[r];
recv_offset[r] = total_recv;
total_recv += recv_count[r];
}
// Pack send buffers: each message contains (j, data[0..num_var-1]) per point
int stride = 1 + num_var; // 1 double for index + num_var doubles for data
double *sendbuf = new double[total_send * stride];
double *recvbuf = new double[total_recv * stride];
// Temporary counters for packing
int *pack_pos = new int[nprocs];
memset(pack_pos, 0, sizeof(int) * nprocs);
for (int j = 0; j < NN; j++)
{
int own = owner_rank[j];
int con = consumer_rank[j];
if (own != myrank || con == myrank)
continue;
int pos = (send_offset[con] + pack_pos[con]) * stride;
sendbuf[pos] = (double)j; // point index
for (int v = 0; v < num_var; v++)
sendbuf[pos + 1 + v] = Shellf[j * num_var + v];
pack_pos[con]++;
}
// Post non-blocking recvs and sends
int n_req = 0;
for (int r = 0; r < nprocs; r++)
{
if (recv_count[r] > 0) n_req++;
if (send_count[r] > 0) n_req++;
}
MPI_Request *reqs = new MPI_Request[n_req];
int req_idx = 0;
for (int r = 0; r < nprocs; r++)
{
if (recv_count[r] > 0)
{
MPI_Irecv(recvbuf + recv_offset[r] * stride,
recv_count[r] * stride, MPI_DOUBLE,
r, 0, MPI_COMM_WORLD, &reqs[req_idx++]);
}
}
for (int r = 0; r < nprocs; r++)
{
if (send_count[r] > 0)
{
MPI_Isend(sendbuf + send_offset[r] * stride,
send_count[r] * stride, MPI_DOUBLE,
r, 0, MPI_COMM_WORLD, &reqs[req_idx++]);
}
}
if (n_req > 0)
MPI_Waitall(n_req, reqs, MPI_STATUSES_IGNORE);
// Unpack recv buffers into Shellf
for (int i = 0; i < total_recv; i++)
{
int pos = i * stride;
int j = (int)recvbuf[pos];
for (int v = 0; v < num_var; v++)
Shellf[j * num_var + v] = recvbuf[pos + 1 + v];
}
delete[] reqs;
delete[] sendbuf;
delete[] recvbuf;
delete[] pack_pos;
delete[] send_offset;
delete[] recv_offset;
delete[] send_count;
delete[] recv_count;
delete[] consumer_rank;
delete[] owner_rank;
delete[] shellf;
delete[] weight;
delete[] Weight;
delete[] DH;
delete[] llb;
delete[] uub;
}
void Patch::Interp_Points(MyList<var> *VarList,
int NN, double **XX,
@@ -784,22 +573,24 @@ void Patch::Interp_Points(MyList<var> *VarList,
varl = varl->next;
}
memset(Shellf, 0, sizeof(double) * NN * num_var);
double *shellf;
shellf = new double[NN * num_var];
memset(shellf, 0, sizeof(double) * NN * num_var);
// owner_rank[j] stores the global rank that owns point j
int *owner_rank;
owner_rank = new int[NN];
for (int j = 0; j < NN; j++)
owner_rank[j] = -1;
// we use weight to monitor code, later some day we can move it for optimization
int *weight;
weight = new int[NN];
memset(weight, 0, sizeof(int) * NN);
// Build global-to-local rank translation for Comm_here
MPI_Group world_group, local_group;
MPI_Comm_group(MPI_COMM_WORLD, &world_group);
MPI_Comm_group(Comm_here, &local_group);
double *DH, *llb, *uub;
DH = new double[dim];
double DH[dim], llb[dim], uub[dim];
for (int i = 0; i < dim; i++)
{
DH[i] = getdX(i);
}
llb = new double[dim];
uub = new double[dim];
for (int j = 0; j < NN; j++) // run along points
{
@@ -831,6 +622,12 @@ void Patch::Interp_Points(MyList<var> *VarList,
bool flag = true;
for (int i = 0; i < dim; i++)
{
// NOTE: our dividing structure is (exclude ghost)
// -1 0
// 1 2
// so (0,1) does not belong to any part for vertex structure
// here we put (0,0.5) to left part and (0.5,1) to right part
// BUT for cell structure the bbox is (-1.5,0.5) and (0.5,2.5), there is no missing region at all
#ifdef Vertex
#ifdef Cell
#error Both Cell and Vertex are defined
@@ -855,7 +652,6 @@ void Patch::Interp_Points(MyList<var> *VarList,
if (flag)
{
notfind = false;
owner_rank[j] = BP->rank;
if (myrank == BP->rank)
{
//---> interpolation
@@ -863,11 +659,14 @@ void Patch::Interp_Points(MyList<var> *VarList,
int k = 0;
while (varl) // run along variables
{
f_global_interp(BP->shape, BP->X[0], BP->X[1], BP->X[2], BP->fgfs[varl->data->sgfn], Shellf[j * num_var + k],
// shellf[j*num_var+k] = Parallel::global_interp(dim,BP->shape,BP->X,BP->fgfs[varl->data->sgfn],
// pox,ordn,varl->data->SoA,Symmetry);
f_global_interp(BP->shape, BP->X[0], BP->X[1], BP->X[2], BP->fgfs[varl->data->sgfn], shellf[j * num_var + k],
pox[0], pox[1], pox[2], ordn, varl->data->SoA, Symmetry);
varl = varl->next;
k++;
}
weight[j] = 1;
}
}
if (Bp == ble)
@@ -876,35 +675,97 @@ void Patch::Interp_Points(MyList<var> *VarList,
}
}
// Collect unique global owner ranks and translate to local ranks in Comm_here
// Then broadcast each owner's points via MPI_Bcast on Comm_here
{
int j = 0;
while (j < NN)
{
int cur_owner_global = owner_rank[j];
if (cur_owner_global < 0)
{
// Point not found — skip (error check disabled for sub-communicator levels)
j++;
continue;
}
// Translate global rank to local rank in Comm_here
int cur_owner_local;
MPI_Group_translate_ranks(world_group, 1, &cur_owner_global, local_group, &cur_owner_local);
MPI_Allreduce(shellf, Shellf, NN * num_var, MPI_DOUBLE, MPI_SUM, Comm_here);
int *Weight;
Weight = new int[NN];
MPI_Allreduce(weight, Weight, NN, MPI_INT, MPI_SUM, Comm_here);
// Find contiguous run of points with the same owner
int jstart = j;
while (j < NN && owner_rank[j] == cur_owner_global)
j++;
int count = (j - jstart) * num_var;
MPI_Bcast(Shellf + jstart * num_var, count, MPI_DOUBLE, cur_owner_local, Comm_here);
// misc::tillherecheck("print me");
// if(lmyrank == 0) cout<<"myrank = "<<myrank<<"print me"<<endl;
for (int i = 0; i < NN; i++)
{
if (Weight[i] > 1)
{
if (lmyrank == 0)
cout << "WARNING: Patch::Interp_Points meets multiple weight" << endl;
for (int j = 0; j < num_var; j++)
Shellf[j + i * num_var] = Shellf[j + i * num_var] / Weight[i];
}
#if 0 // for not involved levels, this may fail
else if(Weight[i] == 0 && lmyrank == 0)
{
cout<<"ERROR: Patch::Interp_Points fails to find point (";
for(int j=0;j<dim;j++)
{
cout<<XX[j][i];
if(j<dim-1) cout<<",";
else cout<<")";
}
cout<<" on Patch (";
for(int j=0;j<dim;j++)
{
cout<<bbox[j]<<"+"<<lli[j]*getdX(j);
if(j<dim-1) cout<<",";
else cout<<")--";
}
cout<<"(";
for(int j=0;j<dim;j++)
{
cout<<bbox[dim+j]<<"-"<<uui[j]*getdX(j);
if(j<dim-1) cout<<",";
else cout<<")"<<endl;
}
#if 0
checkBlock();
#else
cout<<"splited domains:"<<endl;
{
MyList<Block> *Bp=blb;
while(Bp)
{
Block *BP=Bp->data;
for(int i=0;i<dim;i++)
{
#ifdef Vertex
#ifdef Cell
#error Both Cell and Vertex are defined
#endif
llb[i] = (feq(BP->bbox[i] ,bbox[i] ,DH[i]/2)) ? BP->bbox[i]+lli[i]*DH[i] : BP->bbox[i] +(ghost_width-0.5)*DH[i];
uub[i] = (feq(BP->bbox[dim+i],bbox[dim+i],DH[i]/2)) ? BP->bbox[dim+i]-uui[i]*DH[i] : BP->bbox[dim+i]-(ghost_width-0.5)*DH[i];
#else
#ifdef Cell
llb[i] = (feq(BP->bbox[i] ,bbox[i] ,DH[i]/2)) ? BP->bbox[i]+lli[i]*DH[i] : BP->bbox[i] +ghost_width*DH[i];
uub[i] = (feq(BP->bbox[dim+i],bbox[dim+i],DH[i]/2)) ? BP->bbox[dim+i]-uui[i]*DH[i] : BP->bbox[dim+i]-ghost_width*DH[i];
#else
#error Not define Vertex nor Cell
#endif
#endif
}
cout<<"(";
for(int j=0;j<dim;j++)
{
cout<<llb[j]<<":"<<uub[j];
if(j<dim-1) cout<<",";
else cout<<")"<<endl;
}
if(Bp == ble) break;
Bp=Bp->next;
}
}
#endif
MPI_Abort(MPI_COMM_WORLD,1);
}
#endif
}
MPI_Group_free(&world_group);
MPI_Group_free(&local_group);
delete[] owner_rank;
delete[] shellf;
delete[] weight;
delete[] Weight;
delete[] DH;
delete[] llb;
delete[] uub;
}
void Patch::checkBlock()
{

View File

@@ -39,10 +39,6 @@ public:
bool Find_Point(double *XX);
void Interp_Points(MyList<var> *VarList,
int NN, double **XX,
double *Shellf, int Symmetry,
int Nmin_consumer, int Nmax_consumer);
void Interp_Points(MyList<var> *VarList,
int NN, double **XX,
double *Shellf, int Symmetry, MPI_Comm Comm_here);

View File

@@ -3756,502 +3756,6 @@ void Parallel::Sync(MyList<Patch> *PatL, MyList<var> *VarList, int Symmetry)
delete[] transfer_src;
delete[] transfer_dst;
}
// Merged Sync: collect all intra-patch and inter-patch grid segment lists,
// then issue a single transfer() call instead of N+1 separate ones.
void Parallel::Sync_merged(MyList<Patch> *PatL, MyList<var> *VarList, int Symmetry)
{
int cpusize;
MPI_Comm_size(MPI_COMM_WORLD, &cpusize);
MyList<Parallel::gridseg> **combined_src = new MyList<Parallel::gridseg> *[cpusize];
MyList<Parallel::gridseg> **combined_dst = new MyList<Parallel::gridseg> *[cpusize];
for (int node = 0; node < cpusize; node++)
combined_src[node] = combined_dst[node] = 0;
// Phase A: Intra-patch ghost exchange segments
MyList<Patch> *Pp = PatL;
while (Pp)
{
Patch *Pat = Pp->data;
MyList<Parallel::gridseg> *dst_ghost = build_ghost_gsl(Pat);
for (int node = 0; node < cpusize; node++)
{
MyList<Parallel::gridseg> *src_owned = build_owned_gsl0(Pat, node);
MyList<Parallel::gridseg> *tsrc = 0, *tdst = 0;
build_gstl(src_owned, dst_ghost, &tsrc, &tdst);
if (tsrc)
{
if (combined_src[node])
combined_src[node]->catList(tsrc);
else
combined_src[node] = tsrc;
}
if (tdst)
{
if (combined_dst[node])
combined_dst[node]->catList(tdst);
else
combined_dst[node] = tdst;
}
if (src_owned)
src_owned->destroyList();
}
if (dst_ghost)
dst_ghost->destroyList();
Pp = Pp->next;
}
// Phase B: Inter-patch buffer exchange segments
MyList<Parallel::gridseg> *dst_buffer = build_buffer_gsl(PatL);
for (int node = 0; node < cpusize; node++)
{
MyList<Parallel::gridseg> *src_owned = build_owned_gsl(PatL, node, 5, Symmetry);
MyList<Parallel::gridseg> *tsrc = 0, *tdst = 0;
build_gstl(src_owned, dst_buffer, &tsrc, &tdst);
if (tsrc)
{
if (combined_src[node])
combined_src[node]->catList(tsrc);
else
combined_src[node] = tsrc;
}
if (tdst)
{
if (combined_dst[node])
combined_dst[node]->catList(tdst);
else
combined_dst[node] = tdst;
}
if (src_owned)
src_owned->destroyList();
}
if (dst_buffer)
dst_buffer->destroyList();
// Phase C: Single transfer
transfer(combined_src, combined_dst, VarList, VarList, Symmetry);
// Phase D: Cleanup
for (int node = 0; node < cpusize; node++)
{
if (combined_src[node])
combined_src[node]->destroyList();
if (combined_dst[node])
combined_dst[node]->destroyList();
}
delete[] combined_src;
delete[] combined_dst;
}
// SyncCache constructor
Parallel::SyncCache::SyncCache()
: valid(false), cpusize(0), combined_src(0), combined_dst(0),
send_lengths(0), recv_lengths(0), send_bufs(0), recv_bufs(0),
send_buf_caps(0), recv_buf_caps(0), reqs(0), stats(0), max_reqs(0),
lengths_valid(false)
{
}
// SyncCache invalidate: free grid segment lists but keep buffers
void Parallel::SyncCache::invalidate()
{
if (!valid)
return;
for (int i = 0; i < cpusize; i++)
{
if (combined_src[i])
combined_src[i]->destroyList();
if (combined_dst[i])
combined_dst[i]->destroyList();
combined_src[i] = combined_dst[i] = 0;
send_lengths[i] = recv_lengths[i] = 0;
}
valid = false;
lengths_valid = false;
}
// SyncCache destroy: free everything
void Parallel::SyncCache::destroy()
{
invalidate();
if (combined_src) delete[] combined_src;
if (combined_dst) delete[] combined_dst;
if (send_lengths) delete[] send_lengths;
if (recv_lengths) delete[] recv_lengths;
if (send_buf_caps) delete[] send_buf_caps;
if (recv_buf_caps) delete[] recv_buf_caps;
for (int i = 0; i < cpusize; i++)
{
if (send_bufs && send_bufs[i]) delete[] send_bufs[i];
if (recv_bufs && recv_bufs[i]) delete[] recv_bufs[i];
}
if (send_bufs) delete[] send_bufs;
if (recv_bufs) delete[] recv_bufs;
if (reqs) delete[] reqs;
if (stats) delete[] stats;
combined_src = combined_dst = 0;
send_lengths = recv_lengths = 0;
send_buf_caps = recv_buf_caps = 0;
send_bufs = recv_bufs = 0;
reqs = 0; stats = 0;
cpusize = 0; max_reqs = 0;
}
// transfer_cached: reuse pre-allocated buffers from SyncCache
void Parallel::transfer_cached(MyList<Parallel::gridseg> **src, MyList<Parallel::gridseg> **dst,
MyList<var> *VarList1, MyList<var> *VarList2,
int Symmetry, SyncCache &cache)
{
int myrank;
MPI_Comm_size(MPI_COMM_WORLD, &cache.cpusize);
MPI_Comm_rank(MPI_COMM_WORLD, &myrank);
int cpusize = cache.cpusize;
int req_no = 0;
int node;
for (node = 0; node < cpusize; node++)
{
if (node == myrank)
{
int length = data_packer(0, src[myrank], dst[myrank], node, PACK, VarList1, VarList2, Symmetry);
cache.recv_lengths[node] = length;
if (length > 0)
{
if (length > cache.recv_buf_caps[node])
{
if (cache.recv_bufs[node]) delete[] cache.recv_bufs[node];
cache.recv_bufs[node] = new double[length];
cache.recv_buf_caps[node] = length;
}
data_packer(cache.recv_bufs[node], src[myrank], dst[myrank], node, PACK, VarList1, VarList2, Symmetry);
}
}
else
{
// send
int slength = data_packer(0, src[myrank], dst[myrank], node, PACK, VarList1, VarList2, Symmetry);
cache.send_lengths[node] = slength;
if (slength > 0)
{
if (slength > cache.send_buf_caps[node])
{
if (cache.send_bufs[node]) delete[] cache.send_bufs[node];
cache.send_bufs[node] = new double[slength];
cache.send_buf_caps[node] = slength;
}
data_packer(cache.send_bufs[node], src[myrank], dst[myrank], node, PACK, VarList1, VarList2, Symmetry);
MPI_Isend((void *)cache.send_bufs[node], slength, MPI_DOUBLE, node, 1, MPI_COMM_WORLD, cache.reqs + req_no++);
}
// recv
int rlength = data_packer(0, src[node], dst[node], node, UNPACK, VarList1, VarList2, Symmetry);
cache.recv_lengths[node] = rlength;
if (rlength > 0)
{
if (rlength > cache.recv_buf_caps[node])
{
if (cache.recv_bufs[node]) delete[] cache.recv_bufs[node];
cache.recv_bufs[node] = new double[rlength];
cache.recv_buf_caps[node] = rlength;
}
MPI_Irecv((void *)cache.recv_bufs[node], rlength, MPI_DOUBLE, node, 1, MPI_COMM_WORLD, cache.reqs + req_no++);
}
}
}
MPI_Waitall(req_no, cache.reqs, cache.stats);
for (node = 0; node < cpusize; node++)
if (cache.recv_bufs[node] && cache.recv_lengths[node] > 0)
data_packer(cache.recv_bufs[node], src[node], dst[node], node, UNPACK, VarList1, VarList2, Symmetry);
}
// Sync_cached: build grid segment lists on first call, reuse on subsequent calls
void Parallel::Sync_cached(MyList<Patch> *PatL, MyList<var> *VarList, int Symmetry, SyncCache &cache)
{
if (!cache.valid)
{
int cpusize;
MPI_Comm_size(MPI_COMM_WORLD, &cpusize);
cache.cpusize = cpusize;
// Allocate cache arrays if needed
if (!cache.combined_src)
{
cache.combined_src = new MyList<Parallel::gridseg> *[cpusize];
cache.combined_dst = new MyList<Parallel::gridseg> *[cpusize];
cache.send_lengths = new int[cpusize];
cache.recv_lengths = new int[cpusize];
cache.send_bufs = new double *[cpusize];
cache.recv_bufs = new double *[cpusize];
cache.send_buf_caps = new int[cpusize];
cache.recv_buf_caps = new int[cpusize];
for (int i = 0; i < cpusize; i++)
{
cache.send_bufs[i] = cache.recv_bufs[i] = 0;
cache.send_buf_caps[i] = cache.recv_buf_caps[i] = 0;
}
cache.max_reqs = 2 * cpusize;
cache.reqs = new MPI_Request[cache.max_reqs];
cache.stats = new MPI_Status[cache.max_reqs];
}
for (int node = 0; node < cpusize; node++)
{
cache.combined_src[node] = cache.combined_dst[node] = 0;
cache.send_lengths[node] = cache.recv_lengths[node] = 0;
}
// Build intra-patch segments (same as Sync_merged Phase A)
MyList<Patch> *Pp = PatL;
while (Pp)
{
Patch *Pat = Pp->data;
MyList<Parallel::gridseg> *dst_ghost = build_ghost_gsl(Pat);
for (int node = 0; node < cpusize; node++)
{
MyList<Parallel::gridseg> *src_owned = build_owned_gsl0(Pat, node);
MyList<Parallel::gridseg> *tsrc = 0, *tdst = 0;
build_gstl(src_owned, dst_ghost, &tsrc, &tdst);
if (tsrc)
{
if (cache.combined_src[node])
cache.combined_src[node]->catList(tsrc);
else
cache.combined_src[node] = tsrc;
}
if (tdst)
{
if (cache.combined_dst[node])
cache.combined_dst[node]->catList(tdst);
else
cache.combined_dst[node] = tdst;
}
if (src_owned) src_owned->destroyList();
}
if (dst_ghost) dst_ghost->destroyList();
Pp = Pp->next;
}
// Build inter-patch segments (same as Sync_merged Phase B)
MyList<Parallel::gridseg> *dst_buffer = build_buffer_gsl(PatL);
for (int node = 0; node < cpusize; node++)
{
MyList<Parallel::gridseg> *src_owned = build_owned_gsl(PatL, node, 5, Symmetry);
MyList<Parallel::gridseg> *tsrc = 0, *tdst = 0;
build_gstl(src_owned, dst_buffer, &tsrc, &tdst);
if (tsrc)
{
if (cache.combined_src[node])
cache.combined_src[node]->catList(tsrc);
else
cache.combined_src[node] = tsrc;
}
if (tdst)
{
if (cache.combined_dst[node])
cache.combined_dst[node]->catList(tdst);
else
cache.combined_dst[node] = tdst;
}
if (src_owned) src_owned->destroyList();
}
if (dst_buffer) dst_buffer->destroyList();
cache.valid = true;
}
// Use cached lists with buffer-reusing transfer
transfer_cached(cache.combined_src, cache.combined_dst, VarList, VarList, Symmetry, cache);
}
// Sync_start: pack and post MPI_Isend/Irecv, return immediately
void Parallel::Sync_start(MyList<Patch> *PatL, MyList<var> *VarList, int Symmetry,
SyncCache &cache, AsyncSyncState &state)
{
// Ensure cache is built
if (!cache.valid)
{
// Build cache (same logic as Sync_cached)
int cpusize;
MPI_Comm_size(MPI_COMM_WORLD, &cpusize);
cache.cpusize = cpusize;
if (!cache.combined_src)
{
cache.combined_src = new MyList<Parallel::gridseg> *[cpusize];
cache.combined_dst = new MyList<Parallel::gridseg> *[cpusize];
cache.send_lengths = new int[cpusize];
cache.recv_lengths = new int[cpusize];
cache.send_bufs = new double *[cpusize];
cache.recv_bufs = new double *[cpusize];
cache.send_buf_caps = new int[cpusize];
cache.recv_buf_caps = new int[cpusize];
for (int i = 0; i < cpusize; i++)
{
cache.send_bufs[i] = cache.recv_bufs[i] = 0;
cache.send_buf_caps[i] = cache.recv_buf_caps[i] = 0;
}
cache.max_reqs = 2 * cpusize;
cache.reqs = new MPI_Request[cache.max_reqs];
cache.stats = new MPI_Status[cache.max_reqs];
}
for (int node = 0; node < cpusize; node++)
{
cache.combined_src[node] = cache.combined_dst[node] = 0;
cache.send_lengths[node] = cache.recv_lengths[node] = 0;
}
MyList<Patch> *Pp = PatL;
while (Pp)
{
Patch *Pat = Pp->data;
MyList<Parallel::gridseg> *dst_ghost = build_ghost_gsl(Pat);
for (int node = 0; node < cpusize; node++)
{
MyList<Parallel::gridseg> *src_owned = build_owned_gsl0(Pat, node);
MyList<Parallel::gridseg> *tsrc = 0, *tdst = 0;
build_gstl(src_owned, dst_ghost, &tsrc, &tdst);
if (tsrc)
{
if (cache.combined_src[node])
cache.combined_src[node]->catList(tsrc);
else
cache.combined_src[node] = tsrc;
}
if (tdst)
{
if (cache.combined_dst[node])
cache.combined_dst[node]->catList(tdst);
else
cache.combined_dst[node] = tdst;
}
if (src_owned) src_owned->destroyList();
}
if (dst_ghost) dst_ghost->destroyList();
Pp = Pp->next;
}
MyList<Parallel::gridseg> *dst_buffer = build_buffer_gsl(PatL);
for (int node = 0; node < cpusize; node++)
{
MyList<Parallel::gridseg> *src_owned = build_owned_gsl(PatL, node, 5, Symmetry);
MyList<Parallel::gridseg> *tsrc = 0, *tdst = 0;
build_gstl(src_owned, dst_buffer, &tsrc, &tdst);
if (tsrc)
{
if (cache.combined_src[node])
cache.combined_src[node]->catList(tsrc);
else
cache.combined_src[node] = tsrc;
}
if (tdst)
{
if (cache.combined_dst[node])
cache.combined_dst[node]->catList(tdst);
else
cache.combined_dst[node] = tdst;
}
if (src_owned) src_owned->destroyList();
}
if (dst_buffer) dst_buffer->destroyList();
cache.valid = true;
}
// Now pack and post async MPI operations
int myrank;
MPI_Comm_rank(MPI_COMM_WORLD, &myrank);
int cpusize = cache.cpusize;
state.req_no = 0;
state.active = true;
MyList<Parallel::gridseg> **src = cache.combined_src;
MyList<Parallel::gridseg> **dst = cache.combined_dst;
for (int node = 0; node < cpusize; node++)
{
if (node == myrank)
{
int length;
if (!cache.lengths_valid) {
length = data_packer(0, src[myrank], dst[myrank], node, PACK, VarList, VarList, Symmetry);
cache.recv_lengths[node] = length;
} else {
length = cache.recv_lengths[node];
}
if (length > 0)
{
if (length > cache.recv_buf_caps[node])
{
if (cache.recv_bufs[node]) delete[] cache.recv_bufs[node];
cache.recv_bufs[node] = new double[length];
cache.recv_buf_caps[node] = length;
}
data_packer(cache.recv_bufs[node], src[myrank], dst[myrank], node, PACK, VarList, VarList, Symmetry);
}
}
else
{
int slength;
if (!cache.lengths_valid) {
slength = data_packer(0, src[myrank], dst[myrank], node, PACK, VarList, VarList, Symmetry);
cache.send_lengths[node] = slength;
} else {
slength = cache.send_lengths[node];
}
if (slength > 0)
{
if (slength > cache.send_buf_caps[node])
{
if (cache.send_bufs[node]) delete[] cache.send_bufs[node];
cache.send_bufs[node] = new double[slength];
cache.send_buf_caps[node] = slength;
}
data_packer(cache.send_bufs[node], src[myrank], dst[myrank], node, PACK, VarList, VarList, Symmetry);
MPI_Isend((void *)cache.send_bufs[node], slength, MPI_DOUBLE, node, 2, MPI_COMM_WORLD, cache.reqs + state.req_no++);
}
int rlength;
if (!cache.lengths_valid) {
rlength = data_packer(0, src[node], dst[node], node, UNPACK, VarList, VarList, Symmetry);
cache.recv_lengths[node] = rlength;
} else {
rlength = cache.recv_lengths[node];
}
if (rlength > 0)
{
if (rlength > cache.recv_buf_caps[node])
{
if (cache.recv_bufs[node]) delete[] cache.recv_bufs[node];
cache.recv_bufs[node] = new double[rlength];
cache.recv_buf_caps[node] = rlength;
}
MPI_Irecv((void *)cache.recv_bufs[node], rlength, MPI_DOUBLE, node, 2, MPI_COMM_WORLD, cache.reqs + state.req_no++);
}
}
}
cache.lengths_valid = true;
}
// Sync_finish: wait for async MPI operations and unpack
void Parallel::Sync_finish(SyncCache &cache, AsyncSyncState &state,
MyList<var> *VarList, int Symmetry)
{
if (!state.active)
return;
MPI_Waitall(state.req_no, cache.reqs, cache.stats);
int cpusize = cache.cpusize;
MyList<Parallel::gridseg> **src = cache.combined_src;
MyList<Parallel::gridseg> **dst = cache.combined_dst;
for (int node = 0; node < cpusize; node++)
if (cache.recv_bufs[node] && cache.recv_lengths[node] > 0)
data_packer(cache.recv_bufs[node], src[node], dst[node], node, UNPACK, VarList, VarList, Symmetry);
state.active = false;
}
// collect buffer grid segments or blocks for the periodic boundary condition of given patch
// ---------------------------------------------------
// |con | |con |
@@ -5286,203 +4790,6 @@ void Parallel::OutBdLow2Himix(MyList<Patch> *PatcL, MyList<Patch> *PatfL,
delete[] transfer_src;
delete[] transfer_dst;
}
// Restrict_cached: cache grid segment lists, reuse buffers via transfer_cached
void Parallel::Restrict_cached(MyList<Patch> *PatcL, MyList<Patch> *PatfL,
MyList<var> *VarList1, MyList<var> *VarList2,
int Symmetry, SyncCache &cache)
{
if (!cache.valid)
{
int cpusize;
MPI_Comm_size(MPI_COMM_WORLD, &cpusize);
cache.cpusize = cpusize;
if (!cache.combined_src)
{
cache.combined_src = new MyList<Parallel::gridseg> *[cpusize];
cache.combined_dst = new MyList<Parallel::gridseg> *[cpusize];
cache.send_lengths = new int[cpusize];
cache.recv_lengths = new int[cpusize];
cache.send_bufs = new double *[cpusize];
cache.recv_bufs = new double *[cpusize];
cache.send_buf_caps = new int[cpusize];
cache.recv_buf_caps = new int[cpusize];
for (int i = 0; i < cpusize; i++)
{
cache.send_bufs[i] = cache.recv_bufs[i] = 0;
cache.send_buf_caps[i] = cache.recv_buf_caps[i] = 0;
}
cache.max_reqs = 2 * cpusize;
cache.reqs = new MPI_Request[cache.max_reqs];
cache.stats = new MPI_Status[cache.max_reqs];
}
MyList<Parallel::gridseg> *dst = build_complete_gsl(PatcL);
for (int node = 0; node < cpusize; node++)
{
MyList<Parallel::gridseg> *src_owned = build_owned_gsl(PatfL, node, 2, Symmetry);
build_gstl(src_owned, dst, &cache.combined_src[node], &cache.combined_dst[node]);
if (src_owned) src_owned->destroyList();
}
if (dst) dst->destroyList();
cache.valid = true;
}
transfer_cached(cache.combined_src, cache.combined_dst, VarList1, VarList2, Symmetry, cache);
}
// OutBdLow2Hi_cached: cache grid segment lists, reuse buffers via transfer_cached
void Parallel::OutBdLow2Hi_cached(MyList<Patch> *PatcL, MyList<Patch> *PatfL,
MyList<var> *VarList1, MyList<var> *VarList2,
int Symmetry, SyncCache &cache)
{
if (!cache.valid)
{
int cpusize;
MPI_Comm_size(MPI_COMM_WORLD, &cpusize);
cache.cpusize = cpusize;
if (!cache.combined_src)
{
cache.combined_src = new MyList<Parallel::gridseg> *[cpusize];
cache.combined_dst = new MyList<Parallel::gridseg> *[cpusize];
cache.send_lengths = new int[cpusize];
cache.recv_lengths = new int[cpusize];
cache.send_bufs = new double *[cpusize];
cache.recv_bufs = new double *[cpusize];
cache.send_buf_caps = new int[cpusize];
cache.recv_buf_caps = new int[cpusize];
for (int i = 0; i < cpusize; i++)
{
cache.send_bufs[i] = cache.recv_bufs[i] = 0;
cache.send_buf_caps[i] = cache.recv_buf_caps[i] = 0;
}
cache.max_reqs = 2 * cpusize;
cache.reqs = new MPI_Request[cache.max_reqs];
cache.stats = new MPI_Status[cache.max_reqs];
}
MyList<Parallel::gridseg> *dst = build_buffer_gsl(PatfL);
for (int node = 0; node < cpusize; node++)
{
MyList<Parallel::gridseg> *src_owned = build_owned_gsl(PatcL, node, 4, Symmetry);
build_gstl(src_owned, dst, &cache.combined_src[node], &cache.combined_dst[node]);
if (src_owned) src_owned->destroyList();
}
if (dst) dst->destroyList();
cache.valid = true;
}
transfer_cached(cache.combined_src, cache.combined_dst, VarList1, VarList2, Symmetry, cache);
}
// OutBdLow2Himix_cached: same as OutBdLow2Hi_cached but uses transfermix for unpacking
void Parallel::OutBdLow2Himix_cached(MyList<Patch> *PatcL, MyList<Patch> *PatfL,
MyList<var> *VarList1, MyList<var> *VarList2,
int Symmetry, SyncCache &cache)
{
if (!cache.valid)
{
int cpusize;
MPI_Comm_size(MPI_COMM_WORLD, &cpusize);
cache.cpusize = cpusize;
if (!cache.combined_src)
{
cache.combined_src = new MyList<Parallel::gridseg> *[cpusize];
cache.combined_dst = new MyList<Parallel::gridseg> *[cpusize];
cache.send_lengths = new int[cpusize];
cache.recv_lengths = new int[cpusize];
cache.send_bufs = new double *[cpusize];
cache.recv_bufs = new double *[cpusize];
cache.send_buf_caps = new int[cpusize];
cache.recv_buf_caps = new int[cpusize];
for (int i = 0; i < cpusize; i++)
{
cache.send_bufs[i] = cache.recv_bufs[i] = 0;
cache.send_buf_caps[i] = cache.recv_buf_caps[i] = 0;
}
cache.max_reqs = 2 * cpusize;
cache.reqs = new MPI_Request[cache.max_reqs];
cache.stats = new MPI_Status[cache.max_reqs];
}
MyList<Parallel::gridseg> *dst = build_buffer_gsl(PatfL);
for (int node = 0; node < cpusize; node++)
{
MyList<Parallel::gridseg> *src_owned = build_owned_gsl(PatcL, node, 4, Symmetry);
build_gstl(src_owned, dst, &cache.combined_src[node], &cache.combined_dst[node]);
if (src_owned) src_owned->destroyList();
}
if (dst) dst->destroyList();
cache.valid = true;
}
// Use transfermix instead of transfer for mix-mode interpolation
int myrank;
MPI_Comm_size(MPI_COMM_WORLD, &cache.cpusize);
MPI_Comm_rank(MPI_COMM_WORLD, &myrank);
int cpusize = cache.cpusize;
int req_no = 0;
for (int node = 0; node < cpusize; node++)
{
if (node == myrank)
{
int length = data_packermix(0, cache.combined_src[myrank], cache.combined_dst[myrank], node, PACK, VarList1, VarList2, Symmetry);
cache.recv_lengths[node] = length;
if (length > 0)
{
if (length > cache.recv_buf_caps[node])
{
if (cache.recv_bufs[node]) delete[] cache.recv_bufs[node];
cache.recv_bufs[node] = new double[length];
cache.recv_buf_caps[node] = length;
}
data_packermix(cache.recv_bufs[node], cache.combined_src[myrank], cache.combined_dst[myrank], node, PACK, VarList1, VarList2, Symmetry);
}
}
else
{
int slength = data_packermix(0, cache.combined_src[myrank], cache.combined_dst[myrank], node, PACK, VarList1, VarList2, Symmetry);
cache.send_lengths[node] = slength;
if (slength > 0)
{
if (slength > cache.send_buf_caps[node])
{
if (cache.send_bufs[node]) delete[] cache.send_bufs[node];
cache.send_bufs[node] = new double[slength];
cache.send_buf_caps[node] = slength;
}
data_packermix(cache.send_bufs[node], cache.combined_src[myrank], cache.combined_dst[myrank], node, PACK, VarList1, VarList2, Symmetry);
MPI_Isend((void *)cache.send_bufs[node], slength, MPI_DOUBLE, node, 1, MPI_COMM_WORLD, cache.reqs + req_no++);
}
int rlength = data_packermix(0, cache.combined_src[node], cache.combined_dst[node], node, UNPACK, VarList1, VarList2, Symmetry);
cache.recv_lengths[node] = rlength;
if (rlength > 0)
{
if (rlength > cache.recv_buf_caps[node])
{
if (cache.recv_bufs[node]) delete[] cache.recv_bufs[node];
cache.recv_bufs[node] = new double[rlength];
cache.recv_buf_caps[node] = rlength;
}
MPI_Irecv((void *)cache.recv_bufs[node], rlength, MPI_DOUBLE, node, 1, MPI_COMM_WORLD, cache.reqs + req_no++);
}
}
}
MPI_Waitall(req_no, cache.reqs, cache.stats);
for (int node = 0; node < cpusize; node++)
if (cache.recv_bufs[node] && cache.recv_lengths[node] > 0)
data_packermix(cache.recv_bufs[node], cache.combined_src[node], cache.combined_dst[node], node, UNPACK, VarList1, VarList2, Symmetry);
}
// collect all buffer grid segments or blocks for given patch
MyList<Parallel::gridseg> *Parallel::build_buffer_gsl(Patch *Pat)
{

View File

@@ -81,43 +81,6 @@ namespace Parallel
int Symmetry);
void Sync(Patch *Pat, MyList<var> *VarList, int Symmetry);
void Sync(MyList<Patch> *PatL, MyList<var> *VarList, int Symmetry);
void Sync_merged(MyList<Patch> *PatL, MyList<var> *VarList, int Symmetry);
struct SyncCache {
bool valid;
int cpusize;
MyList<gridseg> **combined_src;
MyList<gridseg> **combined_dst;
int *send_lengths;
int *recv_lengths;
double **send_bufs;
double **recv_bufs;
int *send_buf_caps;
int *recv_buf_caps;
MPI_Request *reqs;
MPI_Status *stats;
int max_reqs;
bool lengths_valid;
SyncCache();
void invalidate();
void destroy();
};
void Sync_cached(MyList<Patch> *PatL, MyList<var> *VarList, int Symmetry, SyncCache &cache);
void transfer_cached(MyList<gridseg> **src, MyList<gridseg> **dst,
MyList<var> *VarList1, MyList<var> *VarList2,
int Symmetry, SyncCache &cache);
struct AsyncSyncState {
int req_no;
bool active;
AsyncSyncState() : req_no(0), active(false) {}
};
void Sync_start(MyList<Patch> *PatL, MyList<var> *VarList, int Symmetry,
SyncCache &cache, AsyncSyncState &state);
void Sync_finish(SyncCache &cache, AsyncSyncState &state,
MyList<var> *VarList, int Symmetry);
void OutBdLow2Hi(Patch *Patc, Patch *Patf,
MyList<var> *VarList1 /* source */, MyList<var> *VarList2 /* target */,
int Symmetry);
@@ -130,15 +93,6 @@ namespace Parallel
void OutBdLow2Himix(MyList<Patch> *PatcL, MyList<Patch> *PatfL,
MyList<var> *VarList1 /* source */, MyList<var> *VarList2 /* target */,
int Symmetry);
void Restrict_cached(MyList<Patch> *PatcL, MyList<Patch> *PatfL,
MyList<var> *VarList1, MyList<var> *VarList2,
int Symmetry, SyncCache &cache);
void OutBdLow2Hi_cached(MyList<Patch> *PatcL, MyList<Patch> *PatfL,
MyList<var> *VarList1, MyList<var> *VarList2,
int Symmetry, SyncCache &cache);
void OutBdLow2Himix_cached(MyList<Patch> *PatcL, MyList<Patch> *PatfL,
MyList<var> *VarList1, MyList<var> *VarList2,
int Symmetry, SyncCache &cache);
void Prolong(Patch *Patc, Patch *Patf,
MyList<var> *VarList1 /* source */, MyList<var> *VarList2 /* target */,
int Symmetry);

File diff suppressed because it is too large Load Diff

View File

@@ -1,8 +1,7 @@
#ifndef TWO_PUNCTURES_H
#define TWO_PUNCTURES_H
#include <omp.h>
#define StencilSize 19
#define N_PlaneRelax 1
#define NRELAX 200
@@ -33,7 +32,7 @@ private:
int npoints_A, npoints_B, npoints_phi;
double target_M_plus, target_M_minus;
double admMass;
double adm_tol;
@@ -43,18 +42,6 @@ private:
int ntotal;
// ===== Precomputed spectral derivative matrices =====
double *D1_A, *D2_A;
double *D1_B, *D2_B;
double *DF1_phi, *DF2_phi;
// ===== Pre-allocated workspace for LineRelax (per-thread) =====
int max_threads;
double **ws_diag_be, **ws_e_be, **ws_f_be, **ws_b_be, **ws_x_be;
double **ws_l_be, **ws_u_be, **ws_d_be, **ws_y_be;
double **ws_diag_al, **ws_e_al, **ws_f_al, **ws_b_al, **ws_x_al;
double **ws_l_al, **ws_u_al, **ws_d_al, **ws_y_al;
struct parameters
{
int nvar, n1, n2, n3;
@@ -71,28 +58,6 @@ public:
int Newtonmaxit);
~TwoPunctures();
// 02/07: New/modified methods
void allocate_workspace();
void free_workspace();
void precompute_derivative_matrices();
void build_cheb_deriv_matrices(int n, double *D1, double *D2);
void build_fourier_deriv_matrices(int N, double *DF1, double *DF2);
void Derivatives_AB3_MatMul(int nvar, int n1, int n2, int n3, derivs v);
void ThomasAlgorithm_ws(int N, double *b, double *a, double *c, double *x, double *q,
double *l, double *u_ws, double *d, double *y);
void LineRelax_be_omp(double *dv,
int const i, int const k, int const nvar,
int const n1, int const n2, int const n3,
double const *rhs, int const *ncols, int **cols,
double **JFD, int tid);
void LineRelax_al_omp(double *dv,
int const j, int const k, int const nvar,
int const n1, int const n2, int const n3,
double const *rhs, int const *ncols,
int **cols, double **JFD, int tid);
void relax_omp(double *dv, int const nvar, int const n1, int const n2, int const n3,
double const *rhs, int const *ncols, int **cols, double **JFD);
void Solve();
void set_initial_guess(derivs v);
int index(int i, int j, int k, int l, int a, int b, int c, int d);
@@ -151,11 +116,23 @@ public:
double BY_KKofxyz(double x, double y, double z);
void SetMatrix_JFD(int nvar, int n1, int n2, int n3, derivs u, int *ncols, int **cols, double **Matrix);
void J_times_dv(int nvar, int n1, int n2, int n3, derivs dv, double *Jdv, derivs u);
void relax(double *dv, int const nvar, int const n1, int const n2, int const n3,
double const *rhs, int const *ncols, int **cols, double **JFD);
void LineRelax_be(double *dv,
int const i, int const k, int const nvar,
int const n1, int const n2, int const n3,
double const *rhs, int const *ncols, int **cols,
double **JFD);
void JFD_times_dv(int i, int j, int k, int nvar, int n1, int n2,
int n3, derivs dv, derivs u, double *values);
void LinEquations(double A, double B, double X, double R,
double x, double r, double phi,
double y, double z, derivs dU, derivs U, double *values);
void LineRelax_al(double *dv,
int const j, int const k, int const nvar,
int const n1, int const n2, int const n3,
double const *rhs, int const *ncols,
int **cols, double **JFD);
void ThomasAlgorithm(int N, double *b, double *a, double *c, double *x, double *q);
void Save(char *fname);
// provided by Vasileios Paschalidis (vpaschal@illinois.edu)
@@ -164,4 +141,4 @@ public:
void SpecCoef(parameters par, int ivar, double *v, double *cf);
};
#endif /* TWO_PUNCTURES_H */
#endif /* TWO_PUNCTURES_H */

View File

@@ -321,7 +321,22 @@ void Z4c_class::Step(int lev, int YN)
}
Pp = Pp->next;
}
// NOTE: error check deferred to after Shell Patch computation to reduce MPI_Allreduce calls
// check error information
{
int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#ifdef WithShell
// evolve Shell Patches
@@ -339,9 +354,9 @@ void Z4c_class::Step(int lev, int YN)
{
#if (AGM == 0)
f_enforce_ga(cg->shape,
cg->fgfs[gxx0->sgfn], cg->fgfs[gxy0->sgfn], cg->fgfs[gxz0->sgfn],
cg->fgfs[gxx0->sgfn], cg->fgfs[gxy0->sgfn], cg->fgfs[gxz0->sgfn],
cg->fgfs[gyy0->sgfn], cg->fgfs[gyz0->sgfn], cg->fgfs[gzz0->sgfn],
cg->fgfs[Axx0->sgfn], cg->fgfs[Axy0->sgfn], cg->fgfs[Axz0->sgfn],
cg->fgfs[Axx0->sgfn], cg->fgfs[Axy0->sgfn], cg->fgfs[Axz0->sgfn],
cg->fgfs[Ayy0->sgfn], cg->fgfs[Ayz0->sgfn], cg->fgfs[Azz0->sgfn]);
#endif
@@ -453,16 +468,24 @@ void Z4c_class::Step(int lev, int YN)
sPp = sPp->next;
}
}
// Non-blocking error reduction overlapped with Sync to hide Allreduce latency
MPI_Request err_req_pre;
// check error information
{
int erh = ERROR;
MPI_Iallreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD, &err_req_pre);
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
SH->Dump_Data(StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables on Shell Patches at t = " << PhysTime << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#endif
Parallel::AsyncSyncState async_pre;
Parallel::Sync_start(GH->PatL[lev], SynchList_pre, Symmetry, sync_cache_pre[lev], async_pre);
Parallel::Sync(GH->PatL[lev], SynchList_pre, Symmetry);
#ifdef WithShell
if (lev == 0)
@@ -475,30 +498,12 @@ void Z4c_class::Step(int lev, int YN)
{
prev_clock = curr_clock;
curr_clock = clock();
cout << " Shell stuff synchronization used "
<< (double)(curr_clock - prev_clock) / ((double)CLOCKS_PER_SEC)
cout << " Shell stuff synchronization used "
<< (double)(curr_clock - prev_clock) / ((double)CLOCKS_PER_SEC)
<< " seconds! " << endl;
}
}
#endif
Parallel::Sync_finish(sync_cache_pre[lev], async_pre, SynchList_pre, Symmetry);
#ifdef WithShell
// Complete non-blocking error reduction and check
MPI_Wait(&err_req_pre, MPI_STATUS_IGNORE);
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], StateList, 0, PhysTime, dT_lev);
SH->Dump_Data(StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#endif
// for black hole position
if (BH_num > 0 && lev == GH->levels - 1)
@@ -688,7 +693,23 @@ void Z4c_class::Step(int lev, int YN)
Pp = Pp->next;
}
// NOTE: error check deferred to after Shell Patch computation to reduce MPI_Allreduce calls
// check error information
{
int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#ifdef WithShell
// evolve Shell Patches
@@ -829,16 +850,25 @@ void Z4c_class::Step(int lev, int YN)
sPp = sPp->next;
}
}
// Non-blocking error reduction overlapped with Sync to hide Allreduce latency
MPI_Request err_req_cor;
// check error information
{
int erh = ERROR;
MPI_Iallreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD, &err_req_cor);
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
SH->Dump_Data(SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN on Shell Patches in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#endif
Parallel::AsyncSyncState async_cor;
Parallel::Sync_start(GH->PatL[lev], SynchList_cor, Symmetry, sync_cache_cor[lev], async_cor);
Parallel::Sync(GH->PatL[lev], SynchList_cor, Symmetry);
#ifdef WithShell
if (lev == 0)
@@ -851,30 +881,11 @@ void Z4c_class::Step(int lev, int YN)
{
prev_clock = curr_clock;
curr_clock = clock();
cout << " Shell stuff synchronization used "
<< (double)(curr_clock - prev_clock) / ((double)CLOCKS_PER_SEC)
cout << " Shell stuff synchronization used "
<< (double)(curr_clock - prev_clock) / ((double)CLOCKS_PER_SEC)
<< " seconds! " << endl;
}
}
#endif
Parallel::Sync_finish(sync_cache_cor[lev], async_cor, SynchList_cor, Symmetry);
#ifdef WithShell
// Complete non-blocking error reduction and check
MPI_Wait(&err_req_cor, MPI_STATUS_IGNORE);
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], SynchList_pre, 0, PhysTime, dT_lev);
SH->Dump_Data(SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#endif
// for black hole position
if (BH_num > 0 && lev == GH->levels - 1)
@@ -1241,7 +1252,22 @@ void Z4c_class::Step(int lev, int YN)
}
}
#endif
// NOTE: error check deferred to after Shell Patch computation to reduce MPI_Allreduce calls
// check error information
{
int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
// evolve Shell Patches
if (lev == 0)
@@ -1516,15 +1542,23 @@ void Z4c_class::Step(int lev, int YN)
}
#endif
}
// Non-blocking error reduction overlapped with Sync to hide Allreduce latency
MPI_Request err_req_pre;
// check error information
{
int erh = ERROR;
MPI_Iallreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD, &err_req_pre);
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
SH->Dump_Data(StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables on Shell Patches at t = " << PhysTime << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
Parallel::AsyncSyncState async_pre;
Parallel::Sync_start(GH->PatL[lev], SynchList_pre, Symmetry, sync_cache_pre[lev], async_pre);
Parallel::Sync(GH->PatL[lev], SynchList_pre, Symmetry);
if (lev == 0)
{
@@ -1536,8 +1570,8 @@ void Z4c_class::Step(int lev, int YN)
{
prev_clock = curr_clock;
curr_clock = clock();
cout << " Shell stuff synchronization used "
<< (double)(curr_clock - prev_clock) / ((double)CLOCKS_PER_SEC)
cout << " Shell stuff synchronization used "
<< (double)(curr_clock - prev_clock) / ((double)CLOCKS_PER_SEC)
<< " seconds! " << endl;
}
@@ -1586,22 +1620,6 @@ void Z4c_class::Step(int lev, int YN)
}
#endif
}
Parallel::Sync_finish(sync_cache_pre[lev], async_pre, SynchList_pre, Symmetry);
// Complete non-blocking error reduction and check
MPI_Wait(&err_req_pre, MPI_STATUS_IGNORE);
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], StateList, 0, PhysTime, dT_lev);
SH->Dump_Data(StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
// for black hole position
if (BH_num > 0 && lev == GH->levels - 1)
@@ -1823,7 +1841,23 @@ void Z4c_class::Step(int lev, int YN)
Pp = Pp->next;
}
// NOTE: error check deferred to after Shell Patch computation to reduce MPI_Allreduce calls
// check error information
{
int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
// evolve Shell Patches
if (lev == 0)
@@ -2069,15 +2103,24 @@ void Z4c_class::Step(int lev, int YN)
sPp = sPp->next;
}
}
// Non-blocking error reduction overlapped with Sync to hide Allreduce latency
MPI_Request err_req_cor;
// check error information
{
int erh = ERROR;
MPI_Iallreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD, &err_req_cor);
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
SH->Dump_Data(SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN on Shell Patches in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
Parallel::AsyncSyncState async_cor;
Parallel::Sync_start(GH->PatL[lev], SynchList_cor, Symmetry, sync_cache_cor[lev], async_cor);
Parallel::Sync(GH->PatL[lev], SynchList_cor, Symmetry);
if (lev == 0)
{
@@ -2089,8 +2132,8 @@ void Z4c_class::Step(int lev, int YN)
{
prev_clock = curr_clock;
curr_clock = clock();
cout << " Shell stuff synchronization used "
<< (double)(curr_clock - prev_clock) / ((double)CLOCKS_PER_SEC)
cout << " Shell stuff synchronization used "
<< (double)(curr_clock - prev_clock) / ((double)CLOCKS_PER_SEC)
<< " seconds! " << endl;
}
}
@@ -2127,23 +2170,6 @@ void Z4c_class::Step(int lev, int YN)
}
// end smooth
#endif
Parallel::Sync_finish(sync_cache_cor[lev], async_cor, SynchList_cor, Symmetry);
// Complete non-blocking error reduction and check
MPI_Wait(&err_req_cor, MPI_STATUS_IGNORE);
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], SynchList_pre, 0, PhysTime, dT_lev);
SH->Dump_Data(SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
// for black hole position
if (BH_num > 0 && lev == GH->levels - 1)

View File

@@ -730,12 +730,6 @@ void bssn_class::Initialize()
PhysTime = StartTime;
Setup_Black_Hole_position();
}
// Initialize sync caches (per-level, for predictor and corrector)
sync_cache_pre = new Parallel::SyncCache[GH->levels];
sync_cache_cor = new Parallel::SyncCache[GH->levels];
sync_cache_rp_coarse = new Parallel::SyncCache[GH->levels];
sync_cache_rp_fine = new Parallel::SyncCache[GH->levels];
}
//================================================================================================
@@ -987,32 +981,6 @@ bssn_class::~bssn_class()
delete Azzz;
#endif
// Destroy sync caches before GH
if (sync_cache_pre)
{
for (int i = 0; i < GH->levels; i++)
sync_cache_pre[i].destroy();
delete[] sync_cache_pre;
}
if (sync_cache_cor)
{
for (int i = 0; i < GH->levels; i++)
sync_cache_cor[i].destroy();
delete[] sync_cache_cor;
}
if (sync_cache_rp_coarse)
{
for (int i = 0; i < GH->levels; i++)
sync_cache_rp_coarse[i].destroy();
delete[] sync_cache_rp_coarse;
}
if (sync_cache_rp_fine)
{
for (int i = 0; i < GH->levels; i++)
sync_cache_rp_fine[i].destroy();
delete[] sync_cache_rp_fine;
}
delete GH;
#ifdef WithShell
delete SH;
@@ -2213,7 +2181,6 @@ void bssn_class::Evolve(int Steps)
GH->Regrid(Symmetry, BH_num, Porgbr, Porg0,
SynchList_cor, OldStateList, StateList, SynchList_pre,
fgt(PhysTime - dT_mon, StartTime, dT_mon / 2), ErrorMonitor);
for (int il = 0; il < GH->levels; il++) { sync_cache_pre[il].invalidate(); sync_cache_cor[il].invalidate(); sync_cache_rp_coarse[il].invalidate(); sync_cache_rp_fine[il].invalidate(); }
#endif
#if (REGLEV == 0 && (PSTR == 1 || PSTR == 2))
@@ -2429,7 +2396,6 @@ void bssn_class::RecursiveStep(int lev)
GH->Regrid_Onelevel(lev, Symmetry, BH_num, Porgbr, Porg0,
SynchList_cor, OldStateList, StateList, SynchList_pre,
fgt(PhysTime - dT_lev, StartTime, dT_lev / 2), ErrorMonitor);
for (int il = 0; il < GH->levels; il++) { sync_cache_pre[il].invalidate(); sync_cache_cor[il].invalidate(); sync_cache_rp_coarse[il].invalidate(); sync_cache_rp_fine[il].invalidate(); }
#endif
}
@@ -2608,7 +2574,6 @@ void bssn_class::ParallelStep()
GH->Regrid_Onelevel(GH->mylev, Symmetry, BH_num, Porgbr, Porg0,
SynchList_cor, OldStateList, StateList, SynchList_pre,
fgt(PhysTime - dT_lev, StartTime, dT_lev / 2), ErrorMonitor);
for (int il = 0; il < GH->levels; il++) { sync_cache_pre[il].invalidate(); sync_cache_cor[il].invalidate(); sync_cache_rp_coarse[il].invalidate(); sync_cache_rp_fine[il].invalidate(); }
#endif
}
@@ -2775,7 +2740,6 @@ void bssn_class::ParallelStep()
GH->Regrid_Onelevel(lev + 1, Symmetry, BH_num, Porgbr, Porg0,
SynchList_cor, OldStateList, StateList, SynchList_pre,
fgt(PhysTime - dT_levp1, StartTime, dT_levp1 / 2), ErrorMonitor);
for (int il = 0; il < GH->levels; il++) { sync_cache_pre[il].invalidate(); sync_cache_cor[il].invalidate(); sync_cache_rp_coarse[il].invalidate(); sync_cache_rp_fine[il].invalidate(); }
// a_stream.clear();
// a_stream.str("");
@@ -2790,7 +2754,6 @@ void bssn_class::ParallelStep()
GH->Regrid_Onelevel(lev, Symmetry, BH_num, Porgbr, Porg0,
SynchList_cor, OldStateList, StateList, SynchList_pre,
fgt(PhysTime - dT_lev, StartTime, dT_lev / 2), ErrorMonitor);
for (int il = 0; il < GH->levels; il++) { sync_cache_pre[il].invalidate(); sync_cache_cor[il].invalidate(); sync_cache_rp_coarse[il].invalidate(); sync_cache_rp_fine[il].invalidate(); }
// a_stream.clear();
// a_stream.str("");
@@ -2809,7 +2772,6 @@ void bssn_class::ParallelStep()
GH->Regrid_Onelevel(lev - 1, Symmetry, BH_num, Porgbr, Porg0,
SynchList_cor, OldStateList, StateList, SynchList_pre,
fgt(PhysTime - dT_lev, StartTime, dT_levm1 / 2), ErrorMonitor);
for (int il = 0; il < GH->levels; il++) { sync_cache_pre[il].invalidate(); sync_cache_cor[il].invalidate(); sync_cache_rp_coarse[il].invalidate(); sync_cache_rp_fine[il].invalidate(); }
// a_stream.clear();
// a_stream.str("");
@@ -2825,7 +2787,6 @@ void bssn_class::ParallelStep()
GH->Regrid_Onelevel(lev - 1, Symmetry, BH_num, Porgbr, Porg0,
SynchList_cor, OldStateList, StateList, SynchList_pre,
fgt(PhysTime - dT_lev, StartTime, dT_levm1 / 2), ErrorMonitor);
for (int il = 0; il < GH->levels; il++) { sync_cache_pre[il].invalidate(); sync_cache_cor[il].invalidate(); sync_cache_rp_coarse[il].invalidate(); sync_cache_rp_fine[il].invalidate(); }
// a_stream.clear();
// a_stream.str("");
@@ -3197,7 +3158,21 @@ void bssn_class::Step(int lev, int YN)
}
Pp = Pp->next;
}
// NOTE: error check deferred to after Shell Patch computation to reduce MPI_Allreduce calls
// check error information
{
int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables at t = " << PhysTime << ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#ifdef WithShell
// evolve Shell Patches
@@ -3215,9 +3190,9 @@ void bssn_class::Step(int lev, int YN)
{
#if (AGM == 0)
f_enforce_ga(cg->shape,
cg->fgfs[gxx0->sgfn], cg->fgfs[gxy0->sgfn], cg->fgfs[gxz0->sgfn],
cg->fgfs[gxx0->sgfn], cg->fgfs[gxy0->sgfn], cg->fgfs[gxz0->sgfn],
cg->fgfs[gyy0->sgfn], cg->fgfs[gyz0->sgfn], cg->fgfs[gzz0->sgfn],
cg->fgfs[Axx0->sgfn], cg->fgfs[Axy0->sgfn], cg->fgfs[Axz0->sgfn],
cg->fgfs[Axx0->sgfn], cg->fgfs[Axy0->sgfn], cg->fgfs[Axz0->sgfn],
cg->fgfs[Ayy0->sgfn], cg->fgfs[Ayz0->sgfn], cg->fgfs[Azz0->sgfn]);
#endif
@@ -3341,16 +3316,25 @@ void bssn_class::Step(int lev, int YN)
#endif
}
// Non-blocking error reduction overlapped with Sync to hide Allreduce latency
MPI_Request err_req;
// check error information
{
int erh = ERROR;
MPI_Iallreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD, &err_req);
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
SH->Dump_Data(StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables on Shell Patches at t = " << PhysTime << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#endif
Parallel::AsyncSyncState async_pre;
Parallel::Sync_start(GH->PatL[lev], SynchList_pre, Symmetry, sync_cache_pre[lev], async_pre);
Parallel::Sync(GH->PatL[lev], SynchList_pre, Symmetry);
#ifdef WithShell
if (lev == 0)
@@ -3363,29 +3347,12 @@ void bssn_class::Step(int lev, int YN)
{
prev_clock = curr_clock;
curr_clock = clock();
cout << " Shell stuff synchronization used "
<< (double)(curr_clock - prev_clock) / ((double)CLOCKS_PER_SEC)
cout << " Shell stuff synchronization used "
<< (double)(curr_clock - prev_clock) / ((double)CLOCKS_PER_SEC)
<< " seconds! " << endl;
}
}
#endif
Parallel::Sync_finish(sync_cache_pre[lev], async_pre, SynchList_pre, Symmetry);
#ifdef WithShell
// Complete non-blocking error reduction and check
MPI_Wait(&err_req, MPI_STATUS_IGNORE);
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], StateList, 0, PhysTime, dT_lev);
SH->Dump_Data(StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables at t = " << PhysTime << ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#endif
#if (MAPBH == 0)
// for black hole position
@@ -3561,7 +3528,24 @@ void bssn_class::Step(int lev, int YN)
Pp = Pp->next;
}
// NOTE: error check deferred to after Shell Patch computation to reduce MPI_Allreduce calls
// check error information
{
int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#ifdef WithShell
// evolve Shell Patches
@@ -3579,9 +3563,9 @@ void bssn_class::Step(int lev, int YN)
{
#if (AGM == 0)
f_enforce_ga(cg->shape,
cg->fgfs[gxx->sgfn], cg->fgfs[gxy->sgfn], cg->fgfs[gxz->sgfn],
cg->fgfs[gxx->sgfn], cg->fgfs[gxy->sgfn], cg->fgfs[gxz->sgfn],
cg->fgfs[gyy->sgfn], cg->fgfs[gyz->sgfn], cg->fgfs[gzz->sgfn],
cg->fgfs[Axx->sgfn], cg->fgfs[Axy->sgfn], cg->fgfs[Axz->sgfn],
cg->fgfs[Axx->sgfn], cg->fgfs[Axy->sgfn], cg->fgfs[Axz->sgfn],
cg->fgfs[Ayy->sgfn], cg->fgfs[Ayz->sgfn], cg->fgfs[Azz->sgfn]);
#elif (AGM == 1)
if (iter_count == 3)
@@ -3701,16 +3685,26 @@ void bssn_class::Step(int lev, int YN)
sPp = sPp->next;
}
}
// Non-blocking error reduction overlapped with Sync to hide Allreduce latency
MPI_Request err_req_cor;
// check error information
{
int erh = ERROR;
MPI_Iallreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD, &err_req_cor);
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
SH->Dump_Data(SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN on Shell Patches in RK4 substep#"
<< iter_count << " variables at t = "
<< PhysTime << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#endif
Parallel::AsyncSyncState async_cor;
Parallel::Sync_start(GH->PatL[lev], SynchList_cor, Symmetry, sync_cache_cor[lev], async_cor);
Parallel::Sync(GH->PatL[lev], SynchList_cor, Symmetry);
#ifdef WithShell
if (lev == 0)
@@ -3723,31 +3717,12 @@ void bssn_class::Step(int lev, int YN)
{
prev_clock = curr_clock;
curr_clock = clock();
cout << " Shell stuff synchronization used "
<< (double)(curr_clock - prev_clock) / ((double)CLOCKS_PER_SEC)
cout << " Shell stuff synchronization used "
<< (double)(curr_clock - prev_clock) / ((double)CLOCKS_PER_SEC)
<< " seconds! " << endl;
}
}
#endif
Parallel::Sync_finish(sync_cache_cor[lev], async_cor, SynchList_cor, Symmetry);
#ifdef WithShell
// Complete non-blocking error reduction and check
MPI_Wait(&err_req_cor, MPI_STATUS_IGNORE);
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], SynchList_pre, 0, PhysTime, dT_lev);
SH->Dump_Data(SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#endif
#if (MAPBH == 0)
// for black hole position
@@ -4059,7 +4034,22 @@ void bssn_class::Step(int lev, int YN)
}
Pp = Pp->next;
}
// NOTE: error check deferred to after Shell Patch computation to reduce MPI_Allreduce calls
// check error information
{
int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#ifdef WithShell
// evolve Shell Patches
@@ -4077,15 +4067,15 @@ void bssn_class::Step(int lev, int YN)
{
#if (AGM == 0)
f_enforce_ga(cg->shape,
cg->fgfs[gxx0->sgfn], cg->fgfs[gxy0->sgfn], cg->fgfs[gxz0->sgfn],
cg->fgfs[gxx0->sgfn], cg->fgfs[gxy0->sgfn], cg->fgfs[gxz0->sgfn],
cg->fgfs[gyy0->sgfn], cg->fgfs[gyz0->sgfn], cg->fgfs[gzz0->sgfn],
cg->fgfs[Axx0->sgfn], cg->fgfs[Axy0->sgfn], cg->fgfs[Axz0->sgfn],
cg->fgfs[Axx0->sgfn], cg->fgfs[Axy0->sgfn], cg->fgfs[Axz0->sgfn],
cg->fgfs[Ayy0->sgfn], cg->fgfs[Ayz0->sgfn], cg->fgfs[Azz0->sgfn]);
#endif
if (f_compute_rhs_bssn_ss(cg->shape, TRK4, cg->X[0], cg->X[1], cg->X[2],
cg->fgfs[fngfs + ShellPatch::gx],
cg->fgfs[fngfs + ShellPatch::gy],
cg->fgfs[fngfs + ShellPatch::gx],
cg->fgfs[fngfs + ShellPatch::gy],
cg->fgfs[fngfs + ShellPatch::gz],
cg->fgfs[fngfs + ShellPatch::drhodx],
cg->fgfs[fngfs + ShellPatch::drhody],
@@ -4200,16 +4190,25 @@ void bssn_class::Step(int lev, int YN)
}
#endif
}
// Non-blocking error reduction overlapped with Sync to hide Allreduce latency
MPI_Request err_req;
// check error information
{
int erh = ERROR;
MPI_Iallreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD, &err_req);
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
SH->Dump_Data(StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables on Shell Patches at t = "
<< PhysTime << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#endif
Parallel::AsyncSyncState async_pre;
Parallel::Sync_start(GH->PatL[lev], SynchList_pre, Symmetry, sync_cache_pre[lev], async_pre);
Parallel::Sync(GH->PatL[lev], SynchList_pre, Symmetry);
#ifdef WithShell
if (lev == 0)
@@ -4222,27 +4221,9 @@ void bssn_class::Step(int lev, int YN)
{
prev_clock = curr_clock;
curr_clock = clock();
cout << " Shell stuff synchronization used "
<< (double)(curr_clock - prev_clock) / ((double)CLOCKS_PER_SEC)
<< " seconds! " << endl;
}
}
#endif
Parallel::Sync_finish(sync_cache_pre[lev], async_pre, SynchList_pre, Symmetry);
#ifdef WithShell
// Complete non-blocking error reduction and check
MPI_Wait(&err_req, MPI_STATUS_IGNORE);
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], StateList, 0, PhysTime, dT_lev);
SH->Dump_Data(StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
cout << " Shell stuff synchronization used "
<< (double)(curr_clock - prev_clock) / ((double)CLOCKS_PER_SEC)
<< " seconds! " << endl;
}
}
#endif
@@ -4405,7 +4386,23 @@ void bssn_class::Step(int lev, int YN)
Pp = Pp->next;
}
// NOTE: error check deferred to after Shell Patch computation to reduce MPI_Allreduce calls
// check error information
{
int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#ifdef WithShell
// evolve Shell Patches
@@ -4423,9 +4420,9 @@ void bssn_class::Step(int lev, int YN)
{
#if (AGM == 0)
f_enforce_ga(cg->shape,
cg->fgfs[gxx->sgfn], cg->fgfs[gxy->sgfn], cg->fgfs[gxz->sgfn],
cg->fgfs[gxx->sgfn], cg->fgfs[gxy->sgfn], cg->fgfs[gxz->sgfn],
cg->fgfs[gyy->sgfn], cg->fgfs[gyz->sgfn], cg->fgfs[gzz->sgfn],
cg->fgfs[Axx->sgfn], cg->fgfs[Axy->sgfn], cg->fgfs[Axz->sgfn],
cg->fgfs[Axx->sgfn], cg->fgfs[Axy->sgfn], cg->fgfs[Axz->sgfn],
cg->fgfs[Ayy->sgfn], cg->fgfs[Ayz->sgfn], cg->fgfs[Azz->sgfn]);
#elif (AGM == 1)
if (iter_count == 3)
@@ -4545,16 +4542,25 @@ void bssn_class::Step(int lev, int YN)
sPp = sPp->next;
}
}
// Non-blocking error reduction overlapped with Sync to hide Allreduce latency
MPI_Request err_req_cor;
// check error information
{
int erh = ERROR;
MPI_Iallreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD, &err_req_cor);
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
SH->Dump_Data(SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN on Shell Patches in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#endif
Parallel::AsyncSyncState async_cor;
Parallel::Sync_start(GH->PatL[lev], SynchList_cor, Symmetry, sync_cache_cor[lev], async_cor);
Parallel::Sync(GH->PatL[lev], SynchList_cor, Symmetry);
#ifdef WithShell
if (lev == 0)
@@ -4567,30 +4573,11 @@ void bssn_class::Step(int lev, int YN)
{
prev_clock = curr_clock;
curr_clock = clock();
cout << " Shell stuff synchronization used "
<< (double)(curr_clock - prev_clock) / ((double)CLOCKS_PER_SEC)
cout << " Shell stuff synchronization used "
<< (double)(curr_clock - prev_clock) / ((double)CLOCKS_PER_SEC)
<< " seconds! " << endl;
}
}
#endif
Parallel::Sync_finish(sync_cache_cor[lev], async_cor, SynchList_cor, Symmetry);
#ifdef WithShell
// Complete non-blocking error reduction and check
MPI_Wait(&err_req_cor, MPI_STATUS_IGNORE);
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], SynchList_pre, 0, PhysTime, dT_lev);
SH->Dump_Data(SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#endif
// for black hole position
if (BH_num > 0 && lev == GH->levels - 1)
@@ -4956,19 +4943,11 @@ void bssn_class::Step(int lev, int YN)
// misc::tillherecheck(GH->Commlev[lev],GH->start_rank[lev],"after Predictor rhs calculation");
// Non-blocking error reduction overlapped with Sync to hide Allreduce latency
MPI_Request err_req;
// check error information
{
int erh = ERROR;
MPI_Iallreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, GH->Commlev[lev], &err_req);
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, GH->Commlev[lev]);
}
// misc::tillherecheck(GH->Commlev[lev],GH->start_rank[lev],"before Predictor sync");
Parallel::Sync_cached(GH->PatL[lev], SynchList_pre, Symmetry, sync_cache_pre[lev]);
// Complete non-blocking error reduction and check
MPI_Wait(&err_req, MPI_STATUS_IGNORE);
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], StateList, 0, PhysTime, dT_lev);
@@ -4980,6 +4959,10 @@ void bssn_class::Step(int lev, int YN)
}
}
// misc::tillherecheck(GH->Commlev[lev],GH->start_rank[lev],"before Predictor sync");
Parallel::Sync(GH->PatL[lev], SynchList_pre, Symmetry);
#if (MAPBH == 0)
// for black hole position
if (BH_num > 0 && lev == GH->levels - 1)
@@ -5157,34 +5140,30 @@ void bssn_class::Step(int lev, int YN)
// misc::tillherecheck(GH->Commlev[lev],GH->start_rank[lev],"before Corrector error check");
// Non-blocking error reduction overlapped with Sync to hide Allreduce latency
MPI_Request err_req_cor;
// check error information
{
int erh = ERROR;
MPI_Iallreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, GH->Commlev[lev], &err_req_cor);
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, GH->Commlev[lev]);
}
// misc::tillherecheck(GH->Commlev[lev],GH->start_rank[lev],"before Corrector sync");
Parallel::Sync_cached(GH->PatL[lev], SynchList_cor, Symmetry, sync_cache_cor[lev]);
// misc::tillherecheck(GH->Commlev[lev],GH->start_rank[lev],"after Corrector sync");
// Complete non-blocking error reduction and check
MPI_Wait(&err_req_cor, MPI_STATUS_IGNORE);
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime
ErrorMonitor->outfile << "find NaN in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
// misc::tillherecheck(GH->Commlev[lev],GH->start_rank[lev],"before Corrector sync");
Parallel::Sync(GH->PatL[lev], SynchList_cor, Symmetry);
// misc::tillherecheck(GH->Commlev[lev],GH->start_rank[lev],"after Corrector sync");
#if (MAPBH == 0)
// for black hole position
if (BH_num > 0 && lev == GH->levels - 1)
@@ -5468,11 +5447,21 @@ void bssn_class::SHStep()
#if (PSTR == 1 || PSTR == 2)
// misc::tillherecheck(GH->Commlev[lev],GH->start_rank[lev],"before Predictor's error check");
#endif
// Non-blocking error reduction overlapped with Synch to hide Allreduce latency
MPI_Request err_req;
// check error information
{
int erh = ERROR;
MPI_Iallreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD, &err_req);
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
SH->Dump_Data(StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables on Shell Patches at t = " << PhysTime << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
{
@@ -5484,25 +5473,12 @@ void bssn_class::SHStep()
{
prev_clock = curr_clock;
curr_clock = clock();
cout << " Shell stuff synchronization used "
<< (double)(curr_clock - prev_clock) / ((double)CLOCKS_PER_SEC)
cout << " Shell stuff synchronization used "
<< (double)(curr_clock - prev_clock) / ((double)CLOCKS_PER_SEC)
<< " seconds! " << endl;
}
}
// Complete non-blocking error reduction and check
MPI_Wait(&err_req, MPI_STATUS_IGNORE);
if (ERROR)
{
SH->Dump_Data(StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables on Shell Patches at t = " << PhysTime << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
// corrector
for (iter_count = 1; iter_count < 4; iter_count++)
{
@@ -5645,11 +5621,21 @@ void bssn_class::SHStep()
sPp = sPp->next;
}
}
// Non-blocking error reduction overlapped with Synch to hide Allreduce latency
MPI_Request err_req_cor;
// check error information
{
int erh = ERROR;
MPI_Iallreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD, &err_req_cor);
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
SH->Dump_Data(SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN on Shell Patches in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
{
@@ -5661,26 +5647,12 @@ void bssn_class::SHStep()
{
prev_clock = curr_clock;
curr_clock = clock();
cout << " Shell stuff synchronization used "
<< (double)(curr_clock - prev_clock) / ((double)CLOCKS_PER_SEC)
cout << " Shell stuff synchronization used "
<< (double)(curr_clock - prev_clock) / ((double)CLOCKS_PER_SEC)
<< " seconds! " << endl;
}
}
// Complete non-blocking error reduction and check
MPI_Wait(&err_req_cor, MPI_STATUS_IGNORE);
if (ERROR)
{
SH->Dump_Data(SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN on Shell Patches in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
sPp = SH->PatL;
while (sPp)
{
@@ -5809,7 +5781,7 @@ void bssn_class::RestrictProlong(int lev, int YN, bool BB,
// misc::tillherecheck(GH->Commlev[GH->mylev],GH->start_rank[GH->mylev],a_stream.str());
#endif
Parallel::Sync_cached(GH->PatL[lev - 1], SynchList_pre, Symmetry, sync_cache_rp_coarse[lev]);
Parallel::Sync(GH->PatL[lev - 1], SynchList_pre, Symmetry);
#if (PSTR == 1 || PSTR == 2)
// a_stream.clear();
@@ -5819,11 +5791,21 @@ void bssn_class::RestrictProlong(int lev, int YN, bool BB,
#endif
#if (RPB == 0)
Ppc = GH->PatL[lev - 1];
while (Ppc)
{
Pp = GH->PatL[lev];
while (Pp)
{
#if (MIXOUTB == 0)
Parallel::OutBdLow2Hi(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SL, Symmetry);
Parallel::OutBdLow2Hi(Ppc->data, Pp->data, SynchList_pre, SL, Symmetry);
#elif (MIXOUTB == 1)
Parallel::OutBdLow2Himix(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SL, Symmetry);
Parallel::OutBdLow2Himix(Ppc->data, Pp->data, SynchList_pre, SL, Symmetry);
#endif
Pp = Pp->next;
}
Ppc = Ppc->next;
}
#elif (RPB == 1)
// Parallel::OutBdLow2Hi_bam(GH->PatL[lev-1],GH->PatL[lev],SynchList_pre,SL,Symmetry);
Parallel::OutBdLow2Hi_bam(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SL, GH->bdsul[lev], Symmetry);
@@ -5860,7 +5842,7 @@ void bssn_class::RestrictProlong(int lev, int YN, bool BB,
// misc::tillherecheck(GH->Commlev[GH->mylev],GH->start_rank[GH->mylev],a_stream.str());
#endif
Parallel::Sync_cached(GH->PatL[lev - 1], SL, Symmetry, sync_cache_rp_coarse[lev]);
Parallel::Sync(GH->PatL[lev - 1], SL, Symmetry);
#if (PSTR == 1 || PSTR == 2)
// a_stream.clear();
@@ -5870,11 +5852,21 @@ void bssn_class::RestrictProlong(int lev, int YN, bool BB,
#endif
#if (RPB == 0)
Ppc = GH->PatL[lev - 1];
while (Ppc)
{
Pp = GH->PatL[lev];
while (Pp)
{
#if (MIXOUTB == 0)
Parallel::OutBdLow2Hi(GH->PatL[lev - 1], GH->PatL[lev], SL, SL, Symmetry);
Parallel::OutBdLow2Hi(Ppc->data, Pp->data, SL, SL, Symmetry);
#elif (MIXOUTB == 1)
Parallel::OutBdLow2Himix(GH->PatL[lev - 1], GH->PatL[lev], SL, SL, Symmetry);
Parallel::OutBdLow2Himix(Ppc->data, Pp->data, SL, SL, Symmetry);
#endif
Pp = Pp->next;
}
Ppc = Ppc->next;
}
#elif (RPB == 1)
// Parallel::OutBdLow2Hi_bam(GH->PatL[lev-1],GH->PatL[lev],SL,SL,Symmetry);
Parallel::OutBdLow2Hi_bam(GH->PatL[lev - 1], GH->PatL[lev], SL, SL, GH->bdsul[lev], Symmetry);
@@ -5888,7 +5880,7 @@ void bssn_class::RestrictProlong(int lev, int YN, bool BB,
#endif
}
Parallel::Sync_cached(GH->PatL[lev], SL, Symmetry, sync_cache_rp_fine[lev]);
Parallel::Sync(GH->PatL[lev], SL, Symmetry);
#if (PSTR == 1 || PSTR == 2)
// a_stream.clear();
@@ -5946,14 +5938,24 @@ void bssn_class::RestrictProlong_aux(int lev, int YN, bool BB,
Parallel::Restrict_bam(GH->PatL[lev - 1], GH->PatL[lev], SL, SynchList_pre, GH->rsul[lev], Symmetry);
#endif
Parallel::Sync_cached(GH->PatL[lev - 1], SynchList_pre, Symmetry, sync_cache_rp_coarse[lev]);
Parallel::Sync(GH->PatL[lev - 1], SynchList_pre, Symmetry);
#if (RPB == 0)
Ppc = GH->PatL[lev - 1];
while (Ppc)
{
Pp = GH->PatL[lev];
while (Pp)
{
#if (MIXOUTB == 0)
Parallel::OutBdLow2Hi(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SL, Symmetry);
Parallel::OutBdLow2Hi(Ppc->data, Pp->data, SynchList_pre, SL, Symmetry);
#elif (MIXOUTB == 1)
Parallel::OutBdLow2Himix(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SL, Symmetry);
Parallel::OutBdLow2Himix(Ppc->data, Pp->data, SynchList_pre, SL, Symmetry);
#endif
Pp = Pp->next;
}
Ppc = Ppc->next;
}
#elif (RPB == 1)
// Parallel::OutBdLow2Hi_bam(GH->PatL[lev-1],GH->PatL[lev],SynchList_pre,SL,Symmetry);
Parallel::OutBdLow2Hi_bam(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SL, GH->bdsul[lev], Symmetry);
@@ -5968,21 +5970,31 @@ void bssn_class::RestrictProlong_aux(int lev, int YN, bool BB,
Parallel::Restrict_bam(GH->PatL[lev - 1], GH->PatL[lev], SL, SL, GH->rsul[lev], Symmetry);
#endif
Parallel::Sync_cached(GH->PatL[lev - 1], SL, Symmetry, sync_cache_rp_coarse[lev]);
Parallel::Sync(GH->PatL[lev - 1], SL, Symmetry);
#if (RPB == 0)
Ppc = GH->PatL[lev - 1];
while (Ppc)
{
Pp = GH->PatL[lev];
while (Pp)
{
#if (MIXOUTB == 0)
Parallel::OutBdLow2Hi(GH->PatL[lev - 1], GH->PatL[lev], SL, SL, Symmetry);
Parallel::OutBdLow2Hi(Ppc->data, Pp->data, SL, SL, Symmetry);
#elif (MIXOUTB == 1)
Parallel::OutBdLow2Himix(GH->PatL[lev - 1], GH->PatL[lev], SL, SL, Symmetry);
Parallel::OutBdLow2Himix(Ppc->data, Pp->data, SL, SL, Symmetry);
#endif
Pp = Pp->next;
}
Ppc = Ppc->next;
}
#elif (RPB == 1)
// Parallel::OutBdLow2Hi_bam(GH->PatL[lev-1],GH->PatL[lev],SL,SL,Symmetry);
Parallel::OutBdLow2Hi_bam(GH->PatL[lev - 1], GH->PatL[lev], SL, SL, GH->bdsul[lev], Symmetry);
#endif
}
Parallel::Sync_cached(GH->PatL[lev], SL, Symmetry, sync_cache_rp_fine[lev]);
Parallel::Sync(GH->PatL[lev], SL, Symmetry);
}
}
@@ -6033,14 +6045,24 @@ void bssn_class::RestrictProlong(int lev, int YN, bool BB)
Parallel::Restrict_bam(GH->PatL[lev - 1], GH->PatL[lev], SynchList_cor, SynchList_pre, GH->rsul[lev], Symmetry);
#endif
Parallel::Sync_cached(GH->PatL[lev - 1], SynchList_pre, Symmetry, sync_cache_rp_coarse[lev]);
Parallel::Sync(GH->PatL[lev - 1], SynchList_pre, Symmetry);
#if (RPB == 0)
Ppc = GH->PatL[lev - 1];
while (Ppc)
{
Pp = GH->PatL[lev];
while (Pp)
{
#if (MIXOUTB == 0)
Parallel::OutBdLow2Hi(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SynchList_cor, Symmetry);
Parallel::OutBdLow2Hi(Ppc->data, Pp->data, SynchList_pre, SynchList_cor, Symmetry);
#elif (MIXOUTB == 1)
Parallel::OutBdLow2Himix(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SynchList_cor, Symmetry);
Parallel::OutBdLow2Himix(Ppc->data, Pp->data, SynchList_pre, SynchList_cor, Symmetry);
#endif
Pp = Pp->next;
}
Ppc = Ppc->next;
}
#elif (RPB == 1)
// Parallel::OutBdLow2Hi_bam(GH->PatL[lev-1],GH->PatL[lev],SynchList_pre,SynchList_cor,Symmetry);
Parallel::OutBdLow2Hi_bam(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SynchList_cor, GH->bdsul[lev], Symmetry);
@@ -6057,21 +6079,31 @@ void bssn_class::RestrictProlong(int lev, int YN, bool BB)
Parallel::Restrict_bam(GH->PatL[lev - 1], GH->PatL[lev], SynchList_cor, StateList, GH->rsul[lev], Symmetry);
#endif
Parallel::Sync_cached(GH->PatL[lev - 1], StateList, Symmetry, sync_cache_rp_coarse[lev]);
Parallel::Sync(GH->PatL[lev - 1], StateList, Symmetry);
#if (RPB == 0)
Ppc = GH->PatL[lev - 1];
while (Ppc)
{
Pp = GH->PatL[lev];
while (Pp)
{
#if (MIXOUTB == 0)
Parallel::OutBdLow2Hi(GH->PatL[lev - 1], GH->PatL[lev], StateList, SynchList_cor, Symmetry);
Parallel::OutBdLow2Hi(Ppc->data, Pp->data, StateList, SynchList_cor, Symmetry);
#elif (MIXOUTB == 1)
Parallel::OutBdLow2Himix(GH->PatL[lev - 1], GH->PatL[lev], StateList, SynchList_cor, Symmetry);
Parallel::OutBdLow2Himix(Ppc->data, Pp->data, StateList, SynchList_cor, Symmetry);
#endif
Pp = Pp->next;
}
Ppc = Ppc->next;
}
#elif (RPB == 1)
// Parallel::OutBdLow2Hi_bam(GH->PatL[lev-1],GH->PatL[lev],StateList,SynchList_cor,Symmetry);
Parallel::OutBdLow2Hi_bam(GH->PatL[lev - 1], GH->PatL[lev], StateList, SynchList_cor, GH->bdsul[lev], Symmetry);
#endif
}
Parallel::Sync_cached(GH->PatL[lev], SynchList_cor, Symmetry, sync_cache_rp_fine[lev]);
Parallel::Sync(GH->PatL[lev], SynchList_cor, Symmetry);
}
}
@@ -6101,11 +6133,21 @@ void bssn_class::ProlongRestrict(int lev, int YN, bool BB)
}
#if (RPB == 0)
Ppc = GH->PatL[lev - 1];
while (Ppc)
{
Pp = GH->PatL[lev];
while (Pp)
{
#if (MIXOUTB == 0)
Parallel::OutBdLow2Hi(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SynchList_cor, Symmetry);
Parallel::OutBdLow2Hi(Ppc->data, Pp->data, SynchList_pre, SynchList_cor, Symmetry);
#elif (MIXOUTB == 1)
Parallel::OutBdLow2Himix(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SynchList_cor, Symmetry);
Parallel::OutBdLow2Himix(Ppc->data, Pp->data, SynchList_pre, SynchList_cor, Symmetry);
#endif
Pp = Pp->next;
}
Ppc = Ppc->next;
}
#elif (RPB == 1)
// Parallel::OutBdLow2Hi_bam(GH->PatL[lev-1],GH->PatL[lev],SynchList_pre,SynchList_cor,Symmetry);
Parallel::OutBdLow2Hi_bam(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SynchList_cor, GH->bdsul[lev], Symmetry);
@@ -6114,11 +6156,21 @@ void bssn_class::ProlongRestrict(int lev, int YN, bool BB)
else // no time refinement levels and for all same time levels
{
#if (RPB == 0)
Ppc = GH->PatL[lev - 1];
while (Ppc)
{
Pp = GH->PatL[lev];
while (Pp)
{
#if (MIXOUTB == 0)
Parallel::OutBdLow2Hi(GH->PatL[lev - 1], GH->PatL[lev], StateList, SynchList_cor, Symmetry);
Parallel::OutBdLow2Hi(Ppc->data, Pp->data, StateList, SynchList_cor, Symmetry);
#elif (MIXOUTB == 1)
Parallel::OutBdLow2Himix(GH->PatL[lev - 1], GH->PatL[lev], StateList, SynchList_cor, Symmetry);
Parallel::OutBdLow2Himix(Ppc->data, Pp->data, StateList, SynchList_cor, Symmetry);
#endif
Pp = Pp->next;
}
Ppc = Ppc->next;
}
#elif (RPB == 1)
// Parallel::OutBdLow2Hi_bam(GH->PatL[lev-1],GH->PatL[lev],StateList,SynchList_cor,Symmetry);
Parallel::OutBdLow2Hi_bam(GH->PatL[lev - 1], GH->PatL[lev], StateList, SynchList_cor, GH->bdsul[lev], Symmetry);
@@ -6134,10 +6186,10 @@ void bssn_class::ProlongRestrict(int lev, int YN, bool BB)
#else
Parallel::Restrict_after(GH->PatL[lev - 1], GH->PatL[lev], SynchList_cor, StateList, Symmetry);
#endif
Parallel::Sync_cached(GH->PatL[lev - 1], StateList, Symmetry, sync_cache_rp_coarse[lev]);
Parallel::Sync(GH->PatL[lev - 1], StateList, Symmetry);
}
Parallel::Sync_cached(GH->PatL[lev], SynchList_cor, Symmetry, sync_cache_rp_fine[lev]);
Parallel::Sync(GH->PatL[lev], SynchList_cor, Symmetry);
}
}
#undef MIXOUTB

View File

@@ -126,11 +126,6 @@ public:
MyList<var> *OldStateList, *DumpList;
MyList<var> *ConstraintList;
Parallel::SyncCache *sync_cache_pre; // per-level cache for predictor sync
Parallel::SyncCache *sync_cache_cor; // per-level cache for corrector sync
Parallel::SyncCache *sync_cache_rp_coarse; // RestrictProlong sync on PatL[lev-1]
Parallel::SyncCache *sync_cache_rp_fine; // RestrictProlong sync on PatL[lev]
monitor *ErrorMonitor, *Psi4Monitor, *BHMonitor, *MAPMonitor;
monitor *ConVMonitor;
surface_integral *Waveshell;

File diff suppressed because it is too large Load Diff

File diff suppressed because it is too large Load Diff

File diff suppressed because it is too large Load Diff

View File

@@ -18,61 +18,49 @@
real*8, dimension(ex(1),ex(2),ex(3)), intent(inout) :: Ayy,Ayz,Azz
!~~~~~~~> Local variable:
integer :: i,j,k
real*8 :: lgxx,lgyy,lgzz,ldetg
real*8 :: lgupxx,lgupxy,lgupxz,lgupyy,lgupyz,lgupzz
real*8 :: ltrA,lscale
real*8, dimension(ex(1),ex(2),ex(3)) :: trA,detg
real*8, dimension(ex(1),ex(2),ex(3)) :: gxx,gyy,gzz
real*8, dimension(ex(1),ex(2),ex(3)) :: gupxx,gupxy,gupxz,gupyy,gupyz,gupzz
real*8, parameter :: F1o3 = 1.D0 / 3.D0, ONE = 1.D0, TWO = 2.D0
!~~~~~~>
do k=1,ex(3)
do j=1,ex(2)
do i=1,ex(1)
gxx = dxx + ONE
gyy = dyy + ONE
gzz = dzz + ONE
lgxx = dxx(i,j,k) + ONE
lgyy = dyy(i,j,k) + ONE
lgzz = dzz(i,j,k) + ONE
detg = gxx * gyy * gzz + gxy * gyz * gxz + gxz * gxy * gyz - &
gxz * gyy * gxz - gxy * gxy * gzz - gxx * gyz * gyz
gupxx = ( gyy * gzz - gyz * gyz ) / detg
gupxy = - ( gxy * gzz - gyz * gxz ) / detg
gupxz = ( gxy * gyz - gyy * gxz ) / detg
gupyy = ( gxx * gzz - gxz * gxz ) / detg
gupyz = - ( gxx * gyz - gxy * gxz ) / detg
gupzz = ( gxx * gyy - gxy * gxy ) / detg
ldetg = lgxx * lgyy * lgzz &
+ gxy(i,j,k) * gyz(i,j,k) * gxz(i,j,k) &
+ gxz(i,j,k) * gxy(i,j,k) * gyz(i,j,k) &
- gxz(i,j,k) * lgyy * gxz(i,j,k) &
- gxy(i,j,k) * gxy(i,j,k) * lgzz &
- lgxx * gyz(i,j,k) * gyz(i,j,k)
trA = gupxx * Axx + gupyy * Ayy + gupzz * Azz &
+ TWO * (gupxy * Axy + gupxz * Axz + gupyz * Ayz)
lgupxx = ( lgyy * lgzz - gyz(i,j,k) * gyz(i,j,k) ) / ldetg
lgupxy = - ( gxy(i,j,k) * lgzz - gyz(i,j,k) * gxz(i,j,k) ) / ldetg
lgupxz = ( gxy(i,j,k) * gyz(i,j,k) - lgyy * gxz(i,j,k) ) / ldetg
lgupyy = ( lgxx * lgzz - gxz(i,j,k) * gxz(i,j,k) ) / ldetg
lgupyz = - ( lgxx * gyz(i,j,k) - gxy(i,j,k) * gxz(i,j,k) ) / ldetg
lgupzz = ( lgxx * lgyy - gxy(i,j,k) * gxy(i,j,k) ) / ldetg
Axx = Axx - F1o3 * gxx * trA
Axy = Axy - F1o3 * gxy * trA
Axz = Axz - F1o3 * gxz * trA
Ayy = Ayy - F1o3 * gyy * trA
Ayz = Ayz - F1o3 * gyz * trA
Azz = Azz - F1o3 * gzz * trA
ltrA = lgupxx * Axx(i,j,k) + lgupyy * Ayy(i,j,k) &
+ lgupzz * Azz(i,j,k) &
+ TWO * (lgupxy * Axy(i,j,k) + lgupxz * Axz(i,j,k) &
+ lgupyz * Ayz(i,j,k))
detg = ONE / ( detg ** F1o3 )
gxx = gxx * detg
gxy = gxy * detg
gxz = gxz * detg
gyy = gyy * detg
gyz = gyz * detg
gzz = gzz * detg
Axx(i,j,k) = Axx(i,j,k) - F1o3 * lgxx * ltrA
Axy(i,j,k) = Axy(i,j,k) - F1o3 * gxy(i,j,k) * ltrA
Axz(i,j,k) = Axz(i,j,k) - F1o3 * gxz(i,j,k) * ltrA
Ayy(i,j,k) = Ayy(i,j,k) - F1o3 * lgyy * ltrA
Ayz(i,j,k) = Ayz(i,j,k) - F1o3 * gyz(i,j,k) * ltrA
Azz(i,j,k) = Azz(i,j,k) - F1o3 * lgzz * ltrA
lscale = ONE / ( ldetg ** F1o3 )
dxx(i,j,k) = lgxx * lscale - ONE
gxy(i,j,k) = gxy(i,j,k) * lscale
gxz(i,j,k) = gxz(i,j,k) * lscale
dyy(i,j,k) = lgyy * lscale - ONE
gyz(i,j,k) = gyz(i,j,k) * lscale
dzz(i,j,k) = lgzz * lscale - ONE
enddo
enddo
enddo
dxx = gxx - ONE
dyy = gyy - ONE
dzz = gzz - ONE
return
@@ -94,71 +82,51 @@
real*8, dimension(ex(1),ex(2),ex(3)), intent(inout) :: Ayy,Ayz,Azz
!~~~~~~~> Local variable:
integer :: i,j,k
real*8 :: lgxx,lgyy,lgzz,lscale
real*8 :: lgxy,lgxz,lgyz
real*8 :: lgupxx,lgupxy,lgupxz,lgupyy,lgupyz,lgupzz
real*8 :: ltrA
real*8, dimension(ex(1),ex(2),ex(3)) :: trA
real*8, dimension(ex(1),ex(2),ex(3)) :: gxx,gyy,gzz
real*8, dimension(ex(1),ex(2),ex(3)) :: gupxx,gupxy,gupxz,gupyy,gupyz,gupzz
real*8, parameter :: F1o3 = 1.D0 / 3.D0, ONE = 1.D0, TWO = 2.D0
!~~~~~~>
do k=1,ex(3)
do j=1,ex(2)
do i=1,ex(1)
gxx = dxx + ONE
gyy = dyy + ONE
gzz = dzz + ONE
! for g
gupzz = gxx * gyy * gzz + gxy * gyz * gxz + gxz * gxy * gyz - &
gxz * gyy * gxz - gxy * gxy * gzz - gxx * gyz * gyz
! for g: normalize determinant first
lgxx = dxx(i,j,k) + ONE
lgyy = dyy(i,j,k) + ONE
lgzz = dzz(i,j,k) + ONE
lgxy = gxy(i,j,k)
lgxz = gxz(i,j,k)
lgyz = gyz(i,j,k)
gupzz = ONE / ( gupzz ** F1o3 )
gxx = gxx * gupzz
gxy = gxy * gupzz
gxz = gxz * gupzz
gyy = gyy * gupzz
gyz = gyz * gupzz
gzz = gzz * gupzz
lscale = lgxx * lgyy * lgzz + lgxy * lgyz * lgxz &
+ lgxz * lgxy * lgyz - lgxz * lgyy * lgxz &
- lgxy * lgxy * lgzz - lgxx * lgyz * lgyz
dxx = gxx - ONE
dyy = gyy - ONE
dzz = gzz - ONE
! for A
lscale = ONE / ( lscale ** F1o3 )
gupxx = ( gyy * gzz - gyz * gyz )
gupxy = - ( gxy * gzz - gyz * gxz )
gupxz = ( gxy * gyz - gyy * gxz )
gupyy = ( gxx * gzz - gxz * gxz )
gupyz = - ( gxx * gyz - gxy * gxz )
gupzz = ( gxx * gyy - gxy * gxy )
lgxx = lgxx * lscale
lgxy = lgxy * lscale
lgxz = lgxz * lscale
lgyy = lgyy * lscale
lgyz = lgyz * lscale
lgzz = lgzz * lscale
trA = gupxx * Axx + gupyy * Ayy + gupzz * Azz &
+ TWO * (gupxy * Axy + gupxz * Axz + gupyz * Ayz)
dxx(i,j,k) = lgxx - ONE
gxy(i,j,k) = lgxy
gxz(i,j,k) = lgxz
dyy(i,j,k) = lgyy - ONE
gyz(i,j,k) = lgyz
dzz(i,j,k) = lgzz - ONE
! for A: trace-free using normalized metric (det=1, no division needed)
lgupxx = ( lgyy * lgzz - lgyz * lgyz )
lgupxy = - ( lgxy * lgzz - lgyz * lgxz )
lgupxz = ( lgxy * lgyz - lgyy * lgxz )
lgupyy = ( lgxx * lgzz - lgxz * lgxz )
lgupyz = - ( lgxx * lgyz - lgxy * lgxz )
lgupzz = ( lgxx * lgyy - lgxy * lgxy )
ltrA = lgupxx * Axx(i,j,k) + lgupyy * Ayy(i,j,k) &
+ lgupzz * Azz(i,j,k) &
+ TWO * (lgupxy * Axy(i,j,k) + lgupxz * Axz(i,j,k) &
+ lgupyz * Ayz(i,j,k))
Axx(i,j,k) = Axx(i,j,k) - F1o3 * lgxx * ltrA
Axy(i,j,k) = Axy(i,j,k) - F1o3 * lgxy * ltrA
Axz(i,j,k) = Axz(i,j,k) - F1o3 * lgxz * ltrA
Ayy(i,j,k) = Ayy(i,j,k) - F1o3 * lgyy * ltrA
Ayz(i,j,k) = Ayz(i,j,k) - F1o3 * lgyz * ltrA
Azz(i,j,k) = Azz(i,j,k) - F1o3 * lgzz * ltrA
enddo
enddo
enddo
Axx = Axx - F1o3 * gxx * trA
Axy = Axy - F1o3 * gxy * trA
Axz = Axz - F1o3 * gxz * trA
Ayy = Ayy - F1o3 * gyy * trA
Ayz = Ayz - F1o3 * gyz * trA
Azz = Azz - F1o3 * gzz * trA
return

View File

@@ -324,6 +324,7 @@ subroutine symmetry_bd(ord,extc,func,funcc,SoA)
integer::i
funcc = 0.d0
funcc(1:extc(1),1:extc(2),1:extc(3)) = func
do i=0,ord-1
funcc(-i,1:extc(2),1:extc(3)) = funcc(i+2,1:extc(2),1:extc(3))*SoA(1)
@@ -349,6 +350,7 @@ subroutine symmetry_tbd(ord,extc,func,funcc,SoA)
integer::i
funcc = 0.d0
funcc(1:extc(1),1:extc(2),1:extc(3)) = func
do i=0,ord-1
funcc(-i,1:extc(2),1:extc(3)) = funcc(i+2,1:extc(2),1:extc(3))*SoA(1)
@@ -377,6 +379,7 @@ subroutine symmetry_stbd(ord,extc,func,funcc,SoA)
integer::i
funcc = 0.d0
funcc(1:extc(1),1:extc(2),1:extc(3)) = func
do i=0,ord-1
funcc(-i,1:extc(2),1:extc(3)) = funcc(i+2,1:extc(2),1:extc(3))*SoA(1)
@@ -883,6 +886,7 @@ subroutine symmetry_bd(ord,extc,func,funcc,SoA)
integer::i
funcc = 0.d0
funcc(1:extc(1),1:extc(2),1:extc(3)) = func
do i=0,ord-1
funcc(-i,1:extc(2),1:extc(3)) = funcc(i+1,1:extc(2),1:extc(3))*SoA(1)
@@ -908,6 +912,7 @@ subroutine symmetry_tbd(ord,extc,func,funcc,SoA)
integer::i
funcc = 0.d0
funcc(1:extc(1),1:extc(2),1:extc(3)) = func
do i=0,ord-1
funcc(-i,1:extc(2),1:extc(3)) = funcc(i+1,1:extc(2),1:extc(3))*SoA(1)
@@ -936,6 +941,7 @@ subroutine symmetry_stbd(ord,extc,func,funcc,SoA)
integer::i
funcc = 0.d0
funcc(1:extc(1),1:extc(2),1:extc(3)) = func
do i=0,ord-1
funcc(-i,1:extc(2),1:extc(3)) = funcc(i+1,1:extc(2),1:extc(3))*SoA(1)
@@ -1112,65 +1118,64 @@ end subroutine d2dump
! Lagrangian polynomial interpolation
!------------------------------------------------------------------------------
subroutine polint(xa, ya, x, y, dy, ordn)
subroutine polint(xa,ya,x,y,dy,ordn)
implicit none
integer, intent(in) :: ordn
real*8, dimension(ordn), intent(in) :: xa, ya
!~~~~~~> Input Parameter:
integer,intent(in) :: ordn
real*8, dimension(ordn), intent(in) :: xa,ya
real*8, intent(in) :: x
real*8, intent(out) :: y, dy
real*8, intent(out) :: y,dy
integer :: i, m, ns, n_m
real*8, dimension(ordn) :: c, d, ho
real*8 :: dif, dift, hp, h, den_val
!~~~~~~> Other parameter:
c = ya
d = ya
ho = xa - x
integer :: m,n,ns
real*8, dimension(ordn) :: c,d,den,ho
real*8 :: dif,dift
ns = 1
dif = abs(x - xa(1))
!~~~~~~>
do i = 2, ordn
dift = abs(x - xa(i))
if (dift < dif) then
ns = i
dif = dift
end if
n=ordn
m=ordn
c=ya
d=ya
ho=xa-x
ns=1
dif=abs(x-xa(1))
do m=1,n
dift=abs(x-xa(m))
if(dift < dif) then
ns=m
dif=dift
end if
end do
y = ya(ns)
ns = ns - 1
do m = 1, ordn - 1
n_m = ordn - m
do i = 1, n_m
hp = ho(i)
h = ho(i+m)
den_val = hp - h
if (den_val == 0.0d0) then
write(*,*) 'failure in polint for point',x
write(*,*) 'with input points: ',xa
stop
end if
den_val = (c(i+1) - d(i)) / den_val
d(i) = h * den_val
c(i) = hp * den_val
end do
if (2 * ns < n_m) then
dy = c(ns + 1)
y=ya(ns)
ns=ns-1
do m=1,n-1
den(1:n-m)=ho(1:n-m)-ho(1+m:n)
if (any(den(1:n-m) == 0.0))then
write(*,*) 'failure in polint for point',x
write(*,*) 'with input points: ',xa
stop
endif
den(1:n-m)=(c(2:n-m+1)-d(1:n-m))/den(1:n-m)
d(1:n-m)=ho(1+m:n)*den(1:n-m)
c(1:n-m)=ho(1:n-m)*den(1:n-m)
if (2*ns < n-m) then
dy=c(ns+1)
else
dy = d(ns)
ns = ns - 1
dy=d(ns)
ns=ns-1
end if
y = y + dy
y=y+dy
end do
return
end subroutine polint
!------------------------------------------------------------------------------
!
@@ -1178,37 +1183,35 @@ end subroutine d2dump
!
!------------------------------------------------------------------------------
subroutine polin2(x1a,x2a,ya,x1,x2,y,dy,ordn)
implicit none
!~~~~~~> Input parameters:
integer,intent(in) :: ordn
real*8, dimension(1:ordn), intent(in) :: x1a,x2a
real*8, dimension(1:ordn,1:ordn), intent(in) :: ya
real*8, intent(in) :: x1,x2
real*8, intent(out) :: y,dy
#ifdef POLINT_LEGACY_ORDER
!~~~~~~> Other parameters:
integer :: i,m
real*8, dimension(ordn) :: ymtmp
real*8, dimension(ordn) :: yntmp
m=size(x1a)
do i=1,m
yntmp=ya(i,:)
call polint(x2a,yntmp,x2,ymtmp(i),dy,ordn)
end do
call polint(x1a,ymtmp,x1,y,dy,ordn)
#else
integer :: j
real*8, dimension(ordn) :: ymtmp
real*8 :: dy_temp
do j=1,ordn
call polint(x1a, ya(:,j), x1, ymtmp(j), dy_temp, ordn)
end do
call polint(x2a, ymtmp, x2, y, dy, ordn)
#endif
call polint(x1a,ymtmp,x1,y,dy,ordn)
return
end subroutine polin2
!------------------------------------------------------------------------------
!
@@ -1216,15 +1219,18 @@ end subroutine d2dump
!
!------------------------------------------------------------------------------
subroutine polin3(x1a,x2a,x3a,ya,x1,x2,x3,y,dy,ordn)
implicit none
!~~~~~~> Input parameters:
integer,intent(in) :: ordn
real*8, dimension(1:ordn), intent(in) :: x1a,x2a,x3a
real*8, dimension(1:ordn,1:ordn,1:ordn), intent(in) :: ya
real*8, intent(in) :: x1,x2,x3
real*8, intent(out) :: y,dy
#ifdef POLINT_LEGACY_ORDER
!~~~~~~> Other parameters:
integer :: i,j,m,n
real*8, dimension(ordn,ordn) :: yatmp
real*8, dimension(ordn) :: ymtmp
@@ -1233,33 +1239,24 @@ end subroutine d2dump
m=size(x1a)
n=size(x2a)
do i=1,m
do j=1,n
yqtmp=ya(i,j,:)
call polint(x3a,yqtmp,x3,yatmp(i,j),dy,ordn)
end do
yntmp=yatmp(i,:)
call polint(x2a,yntmp,x2,ymtmp(i),dy,ordn)
end do
call polint(x1a,ymtmp,x1,y,dy,ordn)
#else
integer :: j, k
real*8, dimension(ordn,ordn) :: yatmp
real*8, dimension(ordn) :: ymtmp
real*8 :: dy_temp
do k=1,ordn
do j=1,ordn
call polint(x1a, ya(:,j,k), x1, yatmp(j,k), dy_temp, ordn)
end do
end do
do k=1,ordn
call polint(x2a, yatmp(:,k), x2, ymtmp(k), dy_temp, ordn)
end do
call polint(x3a, ymtmp, x3, y, dy, ordn)
#endif
call polint(x1a,ymtmp,x1,y,dy,ordn)
return
end subroutine polin3
!--------------------------------------------------------------------------------------
! calculate L2norm

View File

@@ -487,201 +487,6 @@ subroutine lopsided(ex,X,Y,Z,f,f_rhs,Sfx,Sfy,Sfz,Symmetry,SoA)
end subroutine lopsided
!-----------------------------------------------------------------------------
! Combined advection (lopsided) + Kreiss-Oliger dissipation (kodis)
! Shares the symmetry_bd buffer fh, eliminating one full-grid copy per call.
! Mathematically identical to calling lopsided then kodis separately.
!-----------------------------------------------------------------------------
subroutine lopsided_kodis(ex,X,Y,Z,f,f_rhs,Sfx,Sfy,Sfz,Symmetry,SoA,eps)
implicit none
!~~~~~~> Input parameters:
integer, intent(in) :: ex(1:3),Symmetry
real*8, intent(in) :: X(1:ex(1)),Y(1:ex(2)),Z(1:ex(3))
real*8,dimension(ex(1),ex(2),ex(3)),intent(in) :: f,Sfx,Sfy,Sfz
real*8,dimension(ex(1),ex(2),ex(3)),intent(inout):: f_rhs
real*8,dimension(3),intent(in) ::SoA
real*8,intent(in) :: eps
!~~~~~~> local variables:
! note index -2,-1,0, so we have 3 extra points
real*8,dimension(-2:ex(1),-2:ex(2),-2:ex(3)) :: fh
integer :: imin,jmin,kmin,imax,jmax,kmax,i,j,k
real*8 :: dX,dY,dZ
real*8 :: d12dx,d12dy,d12dz,d2dx,d2dy,d2dz
real*8, parameter :: ZEO=0.d0,ONE=1.d0, F3=3.d0
real*8, parameter :: TWO=2.d0,F6=6.0d0,F18=1.8d1
real*8, parameter :: F12=1.2d1, F10=1.d1,EIT=8.d0
integer, parameter :: NO_SYMM = 0, EQ_SYMM = 1, OCTANT = 2
! kodis parameters
real*8, parameter :: SIX=6.d0,FIT=1.5d1,TWT=2.d1
real*8, parameter :: cof=6.4d1 ! 2^6
dX = X(2)-X(1)
dY = Y(2)-Y(1)
dZ = Z(2)-Z(1)
d12dx = ONE/F12/dX
d12dy = ONE/F12/dY
d12dz = ONE/F12/dZ
d2dx = ONE/TWO/dX
d2dy = ONE/TWO/dY
d2dz = ONE/TWO/dZ
imax = ex(1)
jmax = ex(2)
kmax = ex(3)
imin = 1
jmin = 1
kmin = 1
if(Symmetry > NO_SYMM .and. dabs(Z(1)) < dZ) kmin = -2
if(Symmetry > EQ_SYMM .and. dabs(X(1)) < dX) imin = -2
if(Symmetry > EQ_SYMM .and. dabs(Y(1)) < dY) jmin = -2
! Single symmetry_bd call shared by both advection and dissipation
call symmetry_bd(3,ex,f,fh,SoA)
! ---- Advection (lopsided) loop ----
! upper bound set ex-1 only for efficiency,
! the loop body will set ex 0 also
do k=1,ex(3)-1
do j=1,ex(2)-1
do i=1,ex(1)-1
! x direction
if(Sfx(i,j,k) > ZEO)then
if(i+3 <= imax)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfx(i,j,k)*d12dx*(-F3*fh(i-1,j,k)-F10*fh(i,j,k)+F18*fh(i+1,j,k) &
-F6*fh(i+2,j,k)+ fh(i+3,j,k))
elseif(i+2 <= imax)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfx(i,j,k)*d12dx*(fh(i-2,j,k)-EIT*fh(i-1,j,k)+EIT*fh(i+1,j,k)-fh(i+2,j,k))
elseif(i+1 <= imax)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfx(i,j,k)*d12dx*(-F3*fh(i+1,j,k)-F10*fh(i,j,k)+F18*fh(i-1,j,k) &
-F6*fh(i-2,j,k)+ fh(i-3,j,k))
endif
elseif(Sfx(i,j,k) < ZEO)then
if(i-3 >= imin)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfx(i,j,k)*d12dx*(-F3*fh(i+1,j,k)-F10*fh(i,j,k)+F18*fh(i-1,j,k) &
-F6*fh(i-2,j,k)+ fh(i-3,j,k))
elseif(i-2 >= imin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfx(i,j,k)*d12dx*(fh(i-2,j,k)-EIT*fh(i-1,j,k)+EIT*fh(i+1,j,k)-fh(i+2,j,k))
elseif(i-1 >= imin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfx(i,j,k)*d12dx*(-F3*fh(i-1,j,k)-F10*fh(i,j,k)+F18*fh(i+1,j,k) &
-F6*fh(i+2,j,k)+ fh(i+3,j,k))
endif
endif
! y direction
if(Sfy(i,j,k) > ZEO)then
if(j+3 <= jmax)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfy(i,j,k)*d12dy*(-F3*fh(i,j-1,k)-F10*fh(i,j,k)+F18*fh(i,j+1,k) &
-F6*fh(i,j+2,k)+ fh(i,j+3,k))
elseif(j+2 <= jmax)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfy(i,j,k)*d12dy*(fh(i,j-2,k)-EIT*fh(i,j-1,k)+EIT*fh(i,j+1,k)-fh(i,j+2,k))
elseif(j+1 <= jmax)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfy(i,j,k)*d12dy*(-F3*fh(i,j+1,k)-F10*fh(i,j,k)+F18*fh(i,j-1,k) &
-F6*fh(i,j-2,k)+ fh(i,j-3,k))
endif
elseif(Sfy(i,j,k) < ZEO)then
if(j-3 >= jmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfy(i,j,k)*d12dy*(-F3*fh(i,j+1,k)-F10*fh(i,j,k)+F18*fh(i,j-1,k) &
-F6*fh(i,j-2,k)+ fh(i,j-3,k))
elseif(j-2 >= jmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfy(i,j,k)*d12dy*(fh(i,j-2,k)-EIT*fh(i,j-1,k)+EIT*fh(i,j+1,k)-fh(i,j+2,k))
elseif(j-1 >= jmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfy(i,j,k)*d12dy*(-F3*fh(i,j-1,k)-F10*fh(i,j,k)+F18*fh(i,j+1,k) &
-F6*fh(i,j+2,k)+ fh(i,j+3,k))
endif
endif
! z direction
if(Sfz(i,j,k) > ZEO)then
if(k+3 <= kmax)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfz(i,j,k)*d12dz*(-F3*fh(i,j,k-1)-F10*fh(i,j,k)+F18*fh(i,j,k+1) &
-F6*fh(i,j,k+2)+ fh(i,j,k+3))
elseif(k+2 <= kmax)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfz(i,j,k)*d12dz*(fh(i,j,k-2)-EIT*fh(i,j,k-1)+EIT*fh(i,j,k+1)-fh(i,j,k+2))
elseif(k+1 <= kmax)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfz(i,j,k)*d12dz*(-F3*fh(i,j,k+1)-F10*fh(i,j,k)+F18*fh(i,j,k-1) &
-F6*fh(i,j,k-2)+ fh(i,j,k-3))
endif
elseif(Sfz(i,j,k) < ZEO)then
if(k-3 >= kmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfz(i,j,k)*d12dz*(-F3*fh(i,j,k+1)-F10*fh(i,j,k)+F18*fh(i,j,k-1) &
-F6*fh(i,j,k-2)+ fh(i,j,k-3))
elseif(k-2 >= kmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfz(i,j,k)*d12dz*(fh(i,j,k-2)-EIT*fh(i,j,k-1)+EIT*fh(i,j,k+1)-fh(i,j,k+2))
elseif(k-1 >= kmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfz(i,j,k)*d12dz*(-F3*fh(i,j,k-1)-F10*fh(i,j,k)+F18*fh(i,j,k+1) &
-F6*fh(i,j,k+2)+ fh(i,j,k+3))
endif
endif
enddo
enddo
enddo
! ---- Dissipation (kodis) loop ----
if(eps > ZEO) then
do k=1,ex(3)
do j=1,ex(2)
do i=1,ex(1)
if(i-3 >= imin .and. i+3 <= imax .and. &
j-3 >= jmin .and. j+3 <= jmax .and. &
k-3 >= kmin .and. k+3 <= kmax) then
f_rhs(i,j,k) = f_rhs(i,j,k) + eps/cof *( ( &
(fh(i-3,j,k)+fh(i+3,j,k)) - &
SIX*(fh(i-2,j,k)+fh(i+2,j,k)) + &
FIT*(fh(i-1,j,k)+fh(i+1,j,k)) - &
TWT* fh(i,j,k) )/dX + &
( &
(fh(i,j-3,k)+fh(i,j+3,k)) - &
SIX*(fh(i,j-2,k)+fh(i,j+2,k)) + &
FIT*(fh(i,j-1,k)+fh(i,j+1,k)) - &
TWT* fh(i,j,k) )/dY + &
( &
(fh(i,j,k-3)+fh(i,j,k+3)) - &
SIX*(fh(i,j,k-2)+fh(i,j,k+2)) + &
FIT*(fh(i,j,k-1)+fh(i,j,k+1)) - &
TWT* fh(i,j,k) )/dZ )
endif
enddo
enddo
enddo
endif
return
end subroutine lopsided_kodis
#elif (ghost_width == 4)
! sixth order code
! Compute advection terms in right hand sides of field equations

View File

@@ -16,12 +16,6 @@ include makefile.inc
.cu.o:
$(Cu) $(CUDA_APP_FLAGS) -c $< -o $@ $(CUDA_LIB_PATH)
TwoPunctures.o: TwoPunctures.C
${CXX} $(CXXAPPFLAGS) -qopenmp -c $< -o $@
TwoPunctureABE.o: TwoPunctureABE.C
${CXX} $(CXXAPPFLAGS) -qopenmp -c $< -o $@
# Input files
C++FILES = ABE.o Ansorg.o Block.o misc.o monitor.o Parallel.o MPatch.o var.o\
cgh.o bssn_class.o surface_integral.o ShellPatch.o\
@@ -40,7 +34,7 @@ C++FILES_GPU = ABE.o Ansorg.o Block.o misc.o monitor.o Parallel.o MPatch.o var.o
F90FILES = enforce_algebra.o fmisc.o initial_puncture.o prolongrestrict.o\
prolongrestrict_cell.o prolongrestrict_vertex.o\
rungekutta4_rout.o bssn_rhs.o diff_new.o kodiss.o kodiss_sh.o\
rungekutta4_rout.o bssn_rhs_opt.o bssn_rhs.o bssn_rhs_legacy.o diff_new.o kodiss.o kodiss_sh.o\
lopsidediff.o sommerfeld_rout.o getnp4.o diff_new_sh.o\
shellfunctions.o bssn_rhs_ss.o Set_Rho_ADM.o\
getnp4EScalar.o bssnEScalar_rhs.o bssn_constraint.o ricci_gamma.o\
@@ -102,7 +96,7 @@ ABEGPU: $(C++FILES_GPU) $(F90FILES) $(F77FILES) $(AHFDOBJS) $(CUDAFILES)
$(CLINKER) $(CXXAPPFLAGS) -o $@ $(C++FILES_GPU) $(F90FILES) $(F77FILES) $(AHFDOBJS) $(CUDAFILES) $(LDLIBS)
TwoPunctureABE: $(TwoPunctureFILES)
$(CLINKER) $(CXXAPPFLAGS) -qopenmp -o $@ $(TwoPunctureFILES) $(LDLIBS)
$(CLINKER) $(CXXAPPFLAGS) -o $@ $(TwoPunctureFILES) $(LDLIBS)
clean:
rm *.o ABE ABEGPU TwoPunctureABE make.log -f

View File

@@ -7,24 +7,25 @@
filein = -I/usr/include/ -I${MKLROOT}/include
## Using sequential MKL (OpenMP disabled for better single-threaded performance)
## Added -lifcore for Intel Fortran runtime and -limf for Intel math library
LDLIBS = -L${MKLROOT}/lib -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lifcore -limf -lpthread -lm -ldl
LDLIBS = -L/usr/lib/x86_64-linux-gnu -L/usr/lib64 -lifcore -limf -lmpi \
-L${MKLROOT}/lib -lmkl_intel_lp64 -lmkl_sequential -lmkl_core \
-lpthread -lm -ldl
## Aggressive optimization flags + PGO Phase 2 (profile-guided optimization)
## -fprofile-instr-use: use collected profile data to guide optimization decisions
## (branch prediction, basic block layout, inlining, loop unrolling)
PROFDATA = ../../pgo_profile/default.profdata
CXXAPPFLAGS = -O3 -xHost -fp-model fast=2 -fma -ipo \
-fprofile-instr-use=$(PROFDATA) \
## Aggressive optimization flags:
## -O3: Maximum optimization
## -xHost: Optimize for the host CPU architecture (Intel/AMD compatible)
## -fp-model fast=2: Aggressive floating-point optimizations
## -fma: Enable fused multiply-add instructions
## Note: OpenMP has been disabled (-qopenmp removed) due to performance issues
CXXAPPFLAGS = -O3 -xHost -fp-model fast=2 -fma \
-Dfortran3 -Dnewc -I${MKLROOT}/include
f90appflags = -O3 -xHost -fp-model fast=2 -fma -ipo \
-fprofile-instr-use=$(PROFDATA) \
-align array64byte -fpp -I${MKLROOT}/include
f90appflags = -O3 -xHost -fp-model fast=2 -fma \
-fpp -I${MKLROOT}/include
f90 = ifx
f77 = ifx
CXX = icpx
CC = icx
CLINKER = mpiicpx
CLINKER = mpiicpx
Cu = nvcc
CUDA_LIB_PATH = -L/usr/lib/cuda/lib64 -I/usr/include -I/usr/lib/cuda/include

View File

@@ -220,9 +220,16 @@ void surface_integral::surf_Wave(double rex, int lev, cgh *GH, var *Rpsi4, var *
pox[2][n] = rex * nz_g[n];
}
double *shellf;
shellf = new double[n_tot * InList];
GH->PatL[lev]->data->Interp_Points(DG_List, n_tot, pox, shellf, Symmetry);
int mp, Lp, Nmin, Nmax;
mp = n_tot / cpusize;
Lp = n_tot - cpusize * mp;
if (Lp > myrank)
{
Nmin = myrank * mp + myrank;
@@ -234,11 +241,6 @@ void surface_integral::surf_Wave(double rex, int lev, cgh *GH, var *Rpsi4, var *
Nmax = Nmin + mp - 1;
}
double *shellf;
shellf = new double[n_tot * InList];
GH->PatL[lev]->data->Interp_Points(DG_List, n_tot, pox, shellf, Symmetry, Nmin, Nmax);
//|~~~~~> Integrate the dot product of Dphi with the surface normal.
double *RP_out, *IP_out;
@@ -361,17 +363,8 @@ void surface_integral::surf_Wave(double rex, int lev, cgh *GH, var *Rpsi4, var *
}
//|------+ Communicate and sum the results from each processor.
{
double *RPIP_out = new double[2 * NN];
double *RPIP = new double[2 * NN];
memcpy(RPIP_out, RP_out, NN * sizeof(double));
memcpy(RPIP_out + NN, IP_out, NN * sizeof(double));
MPI_Allreduce(RPIP_out, RPIP, 2 * NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
memcpy(RP, RPIP, NN * sizeof(double));
memcpy(IP, RPIP + NN, NN * sizeof(double));
delete[] RPIP_out;
delete[] RPIP;
}
MPI_Allreduce(RP_out, RP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(IP_out, IP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
//|------= Free memory.
@@ -563,17 +556,8 @@ void surface_integral::surf_Wave(double rex, int lev, cgh *GH, var *Rpsi4, var *
}
//|------+ Communicate and sum the results from each processor.
{
double *RPIP_out = new double[2 * NN];
double *RPIP = new double[2 * NN];
memcpy(RPIP_out, RP_out, NN * sizeof(double));
memcpy(RPIP_out + NN, IP_out, NN * sizeof(double));
MPI_Allreduce(RPIP_out, RPIP, 2 * NN, MPI_DOUBLE, MPI_SUM, Comm_here);
memcpy(RP, RPIP, NN * sizeof(double));
memcpy(IP, RPIP + NN, NN * sizeof(double));
delete[] RPIP_out;
delete[] RPIP;
}
MPI_Allreduce(RP_out, RP, NN, MPI_DOUBLE, MPI_SUM, Comm_here);
MPI_Allreduce(IP_out, IP, NN, MPI_DOUBLE, MPI_SUM, Comm_here);
//|------= Free memory.
@@ -751,17 +735,8 @@ void surface_integral::surf_Wave(double rex, int lev, ShellPatch *GH, var *Rpsi4
}
//|------+ Communicate and sum the results from each processor.
{
double *RPIP_out = new double[2 * NN];
double *RPIP = new double[2 * NN];
memcpy(RPIP_out, RP_out, NN * sizeof(double));
memcpy(RPIP_out + NN, IP_out, NN * sizeof(double));
MPI_Allreduce(RPIP_out, RPIP, 2 * NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
memcpy(RP, RPIP, NN * sizeof(double));
memcpy(IP, RPIP + NN, NN * sizeof(double));
delete[] RPIP_out;
delete[] RPIP;
}
MPI_Allreduce(RP_out, RP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(IP_out, IP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
//|------= Free memory.
@@ -1009,17 +984,8 @@ void surface_integral::surf_Wave(double rex, int lev, ShellPatch *GH,
}
//|------+ Communicate and sum the results from each processor.
{
double *RPIP_out = new double[2 * NN];
double *RPIP = new double[2 * NN];
memcpy(RPIP_out, RP_out, NN * sizeof(double));
memcpy(RPIP_out + NN, IP_out, NN * sizeof(double));
MPI_Allreduce(RPIP_out, RPIP, 2 * NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
memcpy(RP, RPIP, NN * sizeof(double));
memcpy(IP, RPIP + NN, NN * sizeof(double));
delete[] RPIP_out;
delete[] RPIP;
}
MPI_Allreduce(RP_out, RP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(IP_out, IP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
//|------= Free memory.
@@ -1453,17 +1419,8 @@ void surface_integral::surf_Wave(double rex, int lev, ShellPatch *GH,
}
//|------+ Communicate and sum the results from each processor.
{
double *RPIP_out = new double[2 * NN];
double *RPIP = new double[2 * NN];
memcpy(RPIP_out, RP_out, NN * sizeof(double));
memcpy(RPIP_out + NN, IP_out, NN * sizeof(double));
MPI_Allreduce(RPIP_out, RPIP, 2 * NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
memcpy(RP, RPIP, NN * sizeof(double));
memcpy(IP, RPIP + NN, NN * sizeof(double));
delete[] RPIP_out;
delete[] RPIP;
}
MPI_Allreduce(RP_out, RP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(IP_out, IP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
//|------= Free memory.
@@ -1897,17 +1854,8 @@ void surface_integral::surf_Wave(double rex, int lev, cgh *GH,
}
//|------+ Communicate and sum the results from each processor.
{
double *RPIP_out = new double[2 * NN];
double *RPIP = new double[2 * NN];
memcpy(RPIP_out, RP_out, NN * sizeof(double));
memcpy(RPIP_out + NN, IP_out, NN * sizeof(double));
MPI_Allreduce(RPIP_out, RPIP, 2 * NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
memcpy(RP, RPIP, NN * sizeof(double));
memcpy(IP, RPIP + NN, NN * sizeof(double));
delete[] RPIP_out;
delete[] RPIP;
}
MPI_Allreduce(RP_out, RP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(IP_out, IP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
//|------= Free memory.
@@ -2092,17 +2040,8 @@ void surface_integral::surf_Wave(double rex, int lev, NullShellPatch2 *GH, var *
}
//|------+ Communicate and sum the results from each processor.
{
double *RPIP_out = new double[2 * NN];
double *RPIP = new double[2 * NN];
memcpy(RPIP_out, RP_out, NN * sizeof(double));
memcpy(RPIP_out + NN, IP_out, NN * sizeof(double));
MPI_Allreduce(RPIP_out, RPIP, 2 * NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
memcpy(RP, RPIP, NN * sizeof(double));
memcpy(IP, RPIP + NN, NN * sizeof(double));
delete[] RPIP_out;
delete[] RPIP;
}
MPI_Allreduce(RP_out, RP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(IP_out, IP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
//|------= Free memory.
@@ -2287,17 +2226,8 @@ void surface_integral::surf_Wave(double rex, int lev, NullShellPatch *GH, var *R
}
//|------+ Communicate and sum the results from each processor.
{
double *RPIP_out = new double[2 * NN];
double *RPIP = new double[2 * NN];
memcpy(RPIP_out, RP_out, NN * sizeof(double));
memcpy(RPIP_out + NN, IP_out, NN * sizeof(double));
MPI_Allreduce(RPIP_out, RPIP, 2 * NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
memcpy(RP, RPIP, NN * sizeof(double));
memcpy(IP, RPIP + NN, NN * sizeof(double));
delete[] RPIP_out;
delete[] RPIP;
}
MPI_Allreduce(RP_out, RP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(IP_out, IP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
//|------= Free memory.
@@ -2384,9 +2314,25 @@ void surface_integral::surf_MassPAng(double rex, int lev, cgh *GH, var *chi, var
pox[2][n] = rex * nz_g[n];
}
double *shellf;
shellf = new double[n_tot * InList];
// we have assumed there is only one box on this level,
// so we do not need loop boxes
GH->PatL[lev]->data->Interp_Points(DG_List, n_tot, pox, shellf, Symmetry);
double Mass_out = 0;
double ang_outx, ang_outy, ang_outz;
double p_outx, p_outy, p_outz;
ang_outx = ang_outy = ang_outz = 0.0;
p_outx = p_outy = p_outz = 0.0;
const double f1o8 = 0.125;
int mp, Lp, Nmin, Nmax;
mp = n_tot / cpusize;
Lp = n_tot - cpusize * mp;
if (Lp > myrank)
{
Nmin = myrank * mp + myrank;
@@ -2398,20 +2344,6 @@ void surface_integral::surf_MassPAng(double rex, int lev, cgh *GH, var *chi, var
Nmax = Nmin + mp - 1;
}
double *shellf;
shellf = new double[n_tot * InList];
// we have assumed there is only one box on this level,
// so we do not need loop boxes
GH->PatL[lev]->data->Interp_Points(DG_List, n_tot, pox, shellf, Symmetry, Nmin, Nmax);
double Mass_out = 0;
double ang_outx, ang_outy, ang_outz;
double p_outx, p_outy, p_outz;
ang_outx = ang_outy = ang_outz = 0.0;
p_outx = p_outy = p_outz = 0.0;
const double f1o8 = 0.125;
double Chi, Psi;
double Gxx, Gxy, Gxz, Gyy, Gyz, Gzz;
double gupxx, gupxy, gupxz, gupyy, gupyz, gupzz;
@@ -2532,13 +2464,15 @@ void surface_integral::surf_MassPAng(double rex, int lev, cgh *GH, var *chi, var
}
}
{
double scalar_out[7] = {Mass_out, ang_outx, ang_outy, ang_outz, p_outx, p_outy, p_outz};
double scalar_in[7];
MPI_Allreduce(scalar_out, scalar_in, 7, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
mass = scalar_in[0]; sx = scalar_in[1]; sy = scalar_in[2]; sz = scalar_in[3];
px = scalar_in[4]; py = scalar_in[5]; pz = scalar_in[6];
}
MPI_Allreduce(&Mass_out, &mass, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(&ang_outx, &sx, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(&ang_outy, &sy, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(&ang_outz, &sz, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(&p_outx, &px, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(&p_outy, &py, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(&p_outz, &pz, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
#ifdef GaussInt
mass = mass * rex * rex * dphi * factor;
@@ -2801,13 +2735,15 @@ void surface_integral::surf_MassPAng(double rex, int lev, cgh *GH, var *chi, var
}
}
{
double scalar_out[7] = {Mass_out, ang_outx, ang_outy, ang_outz, p_outx, p_outy, p_outz};
double scalar_in[7];
MPI_Allreduce(scalar_out, scalar_in, 7, MPI_DOUBLE, MPI_SUM, Comm_here);
mass = scalar_in[0]; sx = scalar_in[1]; sy = scalar_in[2]; sz = scalar_in[3];
px = scalar_in[4]; py = scalar_in[5]; pz = scalar_in[6];
}
MPI_Allreduce(&Mass_out, &mass, 1, MPI_DOUBLE, MPI_SUM, Comm_here);
MPI_Allreduce(&ang_outx, &sx, 1, MPI_DOUBLE, MPI_SUM, Comm_here);
MPI_Allreduce(&ang_outy, &sy, 1, MPI_DOUBLE, MPI_SUM, Comm_here);
MPI_Allreduce(&ang_outz, &sz, 1, MPI_DOUBLE, MPI_SUM, Comm_here);
MPI_Allreduce(&p_outx, &px, 1, MPI_DOUBLE, MPI_SUM, Comm_here);
MPI_Allreduce(&p_outy, &py, 1, MPI_DOUBLE, MPI_SUM, Comm_here);
MPI_Allreduce(&p_outz, &pz, 1, MPI_DOUBLE, MPI_SUM, Comm_here);
#ifdef GaussInt
mass = mass * rex * rex * dphi * factor;
@@ -3084,13 +3020,15 @@ void surface_integral::surf_MassPAng(double rex, int lev, ShellPatch *GH, var *c
}
}
{
double scalar_out[7] = {Mass_out, ang_outx, ang_outy, ang_outz, p_outx, p_outy, p_outz};
double scalar_in[7];
MPI_Allreduce(scalar_out, scalar_in, 7, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
mass = scalar_in[0]; sx = scalar_in[1]; sy = scalar_in[2]; sz = scalar_in[3];
px = scalar_in[4]; py = scalar_in[5]; pz = scalar_in[6];
}
MPI_Allreduce(&Mass_out, &mass, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(&ang_outx, &sx, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(&ang_outy, &sy, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(&ang_outz, &sz, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(&p_outx, &px, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(&p_outy, &py, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(&p_outz, &pz, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
#ifdef GaussInt
mass = mass * rex * rex * dphi * factor;
@@ -3669,17 +3607,8 @@ void surface_integral::surf_Wave(double rex, cgh *GH, ShellPatch *SH,
}
//|------+ Communicate and sum the results from each processor.
{
double *RPIP_out = new double[2 * NN];
double *RPIP = new double[2 * NN];
memcpy(RPIP_out, RP_out, NN * sizeof(double));
memcpy(RPIP_out + NN, IP_out, NN * sizeof(double));
MPI_Allreduce(RPIP_out, RPIP, 2 * NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
memcpy(RP, RPIP, NN * sizeof(double));
memcpy(IP, RPIP + NN, NN * sizeof(double));
delete[] RPIP_out;
delete[] RPIP;
}
MPI_Allreduce(RP_out, RP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(IP_out, IP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
//|------= Free memory.

View File

@@ -10,18 +10,17 @@
import AMSS_NCKU_Input as input_data
import subprocess
import time
## CPU core binding configuration using taskset
## taskset ensures all child processes inherit the CPU affinity mask
## This forces make and all compiler processes to use only nohz_full cores (4-55, 60-111)
## Format: taskset -c 4-55,60-111 ensures processes only run on these cores
#NUMACTL_CPU_BIND = "taskset -c 0-111"
NUMACTL_CPU_BIND = "taskset -c 16-47,64-95"
NUMACTL_CPU_BIND = "taskset -c 4-55,60-111"
## Build parallelism configuration
## Use nohz_full cores (4-55, 60-111) for compilation: 52 + 52 = 104 cores
## Set make -j to utilize available cores for faster builds
BUILD_JOBS = 96
BUILD_JOBS = 104
##################################################################
@@ -118,7 +117,6 @@ def run_ABE():
if (input_data.GPU_Calculation == "no"):
mpi_command = NUMACTL_CPU_BIND + " mpirun -np " + str(input_data.MPI_processes) + " ./ABE"
#mpi_command = " mpirun -np " + str(input_data.MPI_processes) + " ./ABE"
mpi_command_outfile = "ABE_out.log"
elif (input_data.GPU_Calculation == "yes"):
mpi_command = NUMACTL_CPU_BIND + " mpirun -np " + str(input_data.MPI_processes) + " ./ABEGPU"
@@ -154,14 +152,13 @@ def run_ABE():
## Run the AMSS-NCKU TwoPuncture program TwoPunctureABE
def run_TwoPunctureABE():
tp_time1=time.time()
print( )
print( " Running the AMSS-NCKU executable file TwoPunctureABE " )
print( )
## Define the command to run
#TwoPuncture_command = NUMACTL_CPU_BIND + " ./TwoPunctureABE"
TwoPuncture_command = " ./TwoPunctureABE"
TwoPuncture_command = NUMACTL_CPU_BIND + " ./TwoPunctureABE"
TwoPuncture_command_outfile = "TwoPunctureABE_out.log"
## Execute the command with subprocess.Popen and stream output
@@ -182,9 +179,7 @@ def run_TwoPunctureABE():
print( )
print( " The TwoPunctureABE simulation is finished " )
print( )
tp_time2=time.time()
et=tp_time2-tp_time1
print(f"Used time: {et}")
return
##################################################################

View File

@@ -1,29 +0,0 @@
import multiprocessing
def run_plot_task(task):
"""Execute a single plotting task.
Parameters
----------
task : tuple
A tuple of (function, args_tuple) where function is a callable
plotting function and args_tuple contains its arguments.
"""
func, args = task
return func(*args)
def run_plot_tasks_parallel(plot_tasks):
"""Execute a list of independent plotting tasks in parallel.
Uses the 'fork' context to create worker processes so that the main
script is NOT re-imported/re-executed in child processes.
Parameters
----------
plot_tasks : list of tuples
Each element is (function, args_tuple).
"""
ctx = multiprocessing.get_context('fork')
with ctx.Pool() as pool:
pool.map(run_plot_task, plot_tasks)

View File

@@ -1,97 +0,0 @@
# AMSS-NCKU PGO Profile Analysis Report
## 1. Profiling Environment
| Item | Value |
|------|-------|
| Compiler | Intel oneAPI DPC++/C++ 2025.3.0 (icpx/ifx) |
| Instrumentation Flag | `-fprofile-instr-generate` |
| Optimization Level (instrumented) | `-O2 -xHost -fma` |
| MPI Processes | 1 (single process to avoid MPI+instrumentation deadlock) |
| Profile File | `default_9725750769337483397_0.profraw` (327 KB) |
| Merged Profile | `default.profdata` (394 KB) |
| llvm-profdata | `/home/intel/oneapi/compiler/2025.3/bin/compiler/llvm-profdata` |
## 2. Reduced Simulation Parameters (for profiling run)
| Parameter | Production Value | Profiling Value |
|-----------|-----------------|-----------------|
| MPI_processes | 64 | 1 |
| grid_level | 9 | 4 |
| static_grid_level | 5 | 3 |
| static_grid_number | 96 | 24 |
| moving_grid_number | 48 | 16 |
| largest_box_xyz_max | 320^3 | 160^3 |
| Final_Evolution_Time | 1000.0 | 10.0 |
| Evolution_Step_Number | 10,000,000 | 1,000 |
| Detector_Number | 12 | 2 |
## 3. Profile Summary
| Metric | Value |
|--------|-------|
| Total instrumented functions | 1,392 |
| Functions with non-zero counts | 117 (8.4%) |
| Functions with zero counts | 1,275 (91.6%) |
| Maximum function entry count | 386,459,248 |
| Maximum internal block count | 370,477,680 |
| Total block count | 4,198,023,118 |
## 4. Top 20 Hotspot Functions
| Rank | Total Count | Max Block Count | Function | Category |
|------|------------|-----------------|----------|----------|
| 1 | 1,241,601,732 | 370,477,680 | `polint_` | Interpolation |
| 2 | 755,994,435 | 230,156,640 | `prolong3_` | Grid prolongation |
| 3 | 667,964,095 | 3,697,792 | `compute_rhs_bssn_` | BSSN RHS evolution |
| 4 | 539,736,051 | 386,459,248 | `symmetry_bd_` | Symmetry boundary |
| 5 | 277,310,808 | 53,170,728 | `lopsided_` | Lopsided FD stencil |
| 6 | 155,534,488 | 94,535,040 | `decide3d_` | 3D grid decision |
| 7 | 119,267,712 | 19,266,048 | `rungekutta4_rout_` | RK4 time integrator |
| 8 | 91,574,616 | 48,824,160 | `kodis_` | Kreiss-Oliger dissipation |
| 9 | 67,555,389 | 43,243,680 | `fderivs_` | Finite differences |
| 10 | 55,296,000 | 42,246,144 | `misc::fact(int)` | Factorial utility |
| 11 | 43,191,071 | 27,663,328 | `fdderivs_` | 2nd-order FD derivatives |
| 12 | 36,233,965 | 22,429,440 | `restrict3_` | Grid restriction |
| 13 | 24,698,512 | 17,231,520 | `polin3_` | Polynomial interpolation |
| 14 | 22,962,942 | 20,968,768 | `copy_` | Data copy |
| 15 | 20,135,696 | 17,259,168 | `Ansorg::barycentric(...)` | Spectral interpolation |
| 16 | 14,650,224 | 7,224,768 | `Ansorg::barycentric_omega(...)` | Spectral weights |
| 17 | 13,242,296 | 2,871,920 | `global_interp_` | Global interpolation |
| 18 | 12,672,000 | 7,734,528 | `sommerfeld_rout_` | Sommerfeld boundary |
| 19 | 6,872,832 | 1,880,064 | `sommerfeld_routbam_` | Sommerfeld boundary (BAM) |
| 20 | 5,709,900 | 2,809,632 | `l2normhelper_` | L2 norm computation |
## 5. Hotspot Category Breakdown
Top 20 functions account for ~98% of total execution counts:
| Category | Functions | Combined Count | Share |
|----------|-----------|---------------|-------|
| Interpolation / Prolongation / Restriction | polint_, prolong3_, restrict3_, polin3_, global_interp_, Ansorg::* | ~2,093M | ~50% |
| BSSN RHS + FD stencils | compute_rhs_bssn_, lopsided_, fderivs_, fdderivs_ | ~1,056M | ~25% |
| Boundary conditions | symmetry_bd_, sommerfeld_rout_, sommerfeld_routbam_ | ~559M | ~13% |
| Time integration | rungekutta4_rout_ | ~119M | ~3% |
| Dissipation | kodis_ | ~92M | ~2% |
| Utilities | misc::fact, decide3d_, copy_, l2normhelper_ | ~256M | ~6% |
## 6. Conclusions
1. **Profile data is valid**: 1,392 functions instrumented, 117 exercised with ~4.2 billion total counts.
2. **Hotspot concentration is high**: Top 5 functions alone account for ~76% of all counts, which is ideal for PGO — the compiler has strong branch/layout optimization targets.
3. **Fortran numerical kernels dominate**: `polint_`, `prolong3_`, `compute_rhs_bssn_`, `symmetry_bd_`, `lopsided_` are all Fortran routines in the inner evolution loop. PGO will optimize their branch prediction and basic block layout.
4. **91.6% of functions have zero counts**: These are code paths for unused features (GPU, BSSN-EScalar, BSSN-EM, Z4C, etc.). PGO will deprioritize them, improving instruction cache utilization.
5. **Profile is representative**: Despite the reduced grid size, the code path coverage matches production — the same kernels (RHS, prolongation, restriction, boundary) are exercised. PGO branch probabilities from this profile will transfer well to full-scale runs.
## 7. PGO Phase 2 Usage
To apply the profile, use the following flags in `makefile.inc`:
```makefile
CXXAPPFLAGS = -O3 -xHost -fp-model fast=2 -fma -ipo \
-fprofile-instr-use=/home/amss/AMSS-NCKU/pgo_profile/default.profdata \
-Dfortran3 -Dnewc -I${MKLROOT}/include
f90appflags = -O3 -xHost -fp-model fast=2 -fma -ipo \
-fprofile-instr-use=/home/amss/AMSS-NCKU/pgo_profile/default.profdata \
-align array64byte -fpp -I${MKLROOT}/include
```

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@@ -11,8 +11,6 @@
import numpy ## numpy for array operations
import scipy ## scipy for interpolation and signal processing
import math
import matplotlib
matplotlib.use('Agg') ## use non-interactive backend for multiprocessing safety
import matplotlib.pyplot as plt ## matplotlib for plotting
import os ## os for system/file operations

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@@ -8,23 +8,16 @@
##
#################################################
## Restrict OpenMP to one thread per process so that running
## many workers in parallel does not create an O(workers * BLAS_threads)
## thread explosion. The variable MUST be set before numpy/scipy
## are imported, because the BLAS library reads them only at load time.
import os
os.environ.setdefault("OMP_NUM_THREADS", "1")
import numpy
import scipy
import matplotlib
matplotlib.use('Agg') ## use non-interactive backend for multiprocessing safety
import matplotlib.pyplot as plt
from matplotlib.colors import LogNorm
from mpl_toolkits.mplot3d import Axes3D
## import torch
import AMSS_NCKU_Input as input_data
import os
#########################################################################################
@@ -199,19 +192,3 @@ def get_data_xy( Rmin, Rmax, n, data0, time, figure_title, figure_outdir ):
####################################################################################
####################################################################################
## Allow this module to be run as a standalone script so that each
## binary-data plot can be executed in a fresh subprocess whose BLAS
## environment variables (set above) take effect before numpy loads.
##
## Usage: python3 plot_binary_data.py <filename> <binary_outdir> <figure_outdir>
####################################################################################
if __name__ == '__main__':
import sys
if len(sys.argv) != 4:
print(f"Usage: {sys.argv[0]} <filename> <binary_outdir> <figure_outdir>")
sys.exit(1)
plot_binary_data(sys.argv[1], sys.argv[2], sys.argv[3])

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@@ -8,8 +8,6 @@
#################################################
import numpy ## numpy for array operations
import matplotlib
matplotlib.use('Agg') ## use non-interactive backend for multiprocessing safety
import matplotlib.pyplot as plt ## matplotlib for plotting
from mpl_toolkits.mplot3d import Axes3D ## needed for 3D plots
import glob
@@ -17,9 +15,6 @@ import os ## operating system utilities
import plot_binary_data
import AMSS_NCKU_Input as input_data
import subprocess
import sys
import multiprocessing
# plt.rcParams['text.usetex'] = True ## enable LaTeX fonts in plots
@@ -55,40 +50,10 @@ def generate_binary_data_plot( binary_outdir, figure_outdir ):
file_list.append(x)
print(x)
## Plot each file in parallel using subprocesses.
## Each subprocess is a fresh Python process where the BLAS thread-count
## environment variables (set at the top of plot_binary_data.py) take
## effect before numpy is imported. This avoids the thread explosion
## that occurs when multiprocessing.Pool with 'fork' context inherits
## already-initialized multi-threaded BLAS from the parent.
script = os.path.join( os.path.dirname(__file__), "plot_binary_data.py" )
max_workers = min( multiprocessing.cpu_count(), len(file_list) ) if file_list else 0
running = []
failed = []
## Plot each file in the list
for filename in file_list:
print(filename)
proc = subprocess.Popen(
[sys.executable, script, filename, binary_outdir, figure_outdir],
)
running.append( (proc, filename) )
## Keep at most max_workers subprocesses active at a time
if len(running) >= max_workers:
p, fn = running.pop(0)
p.wait()
if p.returncode != 0:
failed.append(fn)
## Wait for all remaining subprocesses to finish
for p, fn in running:
p.wait()
if p.returncode != 0:
failed.append(fn)
if failed:
print( " WARNING: the following binary data plots failed:" )
for fn in failed:
print( " ", fn )
plot_binary_data.plot_binary_data(filename, binary_outdir, figure_outdir)
print( )
print( " Binary Data Plot Has been Finished " )