Bumps barstools and fixes build system after (#63)

Barstools now handles annotations correctly.
This means that the blackboxresources for the harness
and top are different and need to be merged in the build system.
We also add all Sim*.cc files to default resources as our new emulator
demands. We then remove them from the harness .f file to avoid having
to detect which ones to include selectively.

vsim/Makefile

@@ -22,8 +22,6 @@ ifneq ($(filter run% %.run %.out %.vpd %.vcd,$(MAKECMDGOALS)),)
 -include $(build_dir)/$(long_name).d
 endif
 
-sim_blackboxes = \
-  $(build_dir)/firrtl_black_box_resource_files.f
 
 rocketchip_vsrc_dir = $(ROCKETCHIP_DIR)/src/main/resources/vsrc
 
@@ -40,7 +38,7 @@ VCS_OPTS = -notice -line +lint=all,noVCDE,noONGS,noUI -error=PCWM-L -timescale=1
 	-CC "-I$(RISCV)/include" \
 	-CC "-std=c++11" \
 	-CC "-Wl,-rpath,$(RISCV)/lib" \
-	-f $(sim_blackboxes) -f $(sim_dotf) \
+	-f $(sim_top_blackboxes) -f $(sim_harness_blackboxes) -f $(sim_dotf) \
 	$(RISCV)/lib/libfesvr.so \
 	-sverilog \
 	+incdir+$(generated_dir) \