From 51c260443ce27a059aa3409da4ba1072da70fc39 Mon Sep 17 00:00:00 2001
From: Alessandro Candido <candido.ale@gmail.com>
Date: Wed, 10 Apr 2024 12:24:15 +0200
Subject: [PATCH] build: Poetry lock, and drop some unused docs dependencies

---
 doc/source/conf.py |   8 -
 poetry.lock        | 751 +++++++++++++++++++++------------------------
 pyproject.toml     |   6 +-
 3 files changed, 348 insertions(+), 417 deletions(-)

diff --git a/doc/source/conf.py b/doc/source/conf.py
index 54b6045..7f78954 100644
--- a/doc/source/conf.py
+++ b/doc/source/conf.py
@@ -11,7 +11,6 @@
 #
 from pathlib import Path
 
-from recommonmark.transform import AutoStructify
 from sphinx.ext import apidoc
 
 import qibotn
@@ -45,7 +44,6 @@ extensions = [
     "sphinx.ext.napoleon",
     "sphinx.ext.intersphinx",
     "sphinx_copybutton",
-    "recommonmark",
     "sphinxcontrib.katex",
 ]
 
@@ -91,10 +89,6 @@ html_theme_options = {
     ],
 }
 
-# Adapted this from
-# https://github.com/readthedocs/recommonmark/blob/ddd56e7717e9745f11300059e4268e204138a6b1/docs/conf.py
-# app setup hook
-
 autodoc_mock_imports = ["cupy", "cuquantum"]
 
 
@@ -107,8 +101,6 @@ def run_apidoc(_):
 
 
 def setup(app):
-    app.add_config_value("recommonmark_config", {"enable_eval_rst": True}, True)
-    app.add_transform(AutoStructify)
     app.add_css_file("css/style.css")
 
     app.connect("builder-inited", run_apidoc)
diff --git a/poetry.lock b/poetry.lock
index e78a4c1..0b8af51 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,4 +1,4 @@
-# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand.
+# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand.
 
 [[package]]
 name = "alabaster"
@@ -258,80 +258,66 @@ files = [
     {file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"},
 ]
 
-[[package]]
-name = "commonmark"
-version = "0.9.1"
-description = "Python parser for the CommonMark Markdown spec"
-optional = false
-python-versions = "*"
-files = [
-    {file = "commonmark-0.9.1-py2.py3-none-any.whl", hash = "sha256:da2f38c92590f83de410ba1a3cbceafbc74fee9def35f9251ba9a971d6d66fd9"},
-    {file = "commonmark-0.9.1.tar.gz", hash = "sha256:452f9dc859be7f06631ddcb328b6919c67984aca654e5fefb3914d54691aed60"},
-]
-
-[package.extras]
-test = ["flake8 (==3.7.8)", "hypothesis (==3.55.3)"]
-
 [[package]]
 name = "contourpy"
-version = "1.2.0"
+version = "1.2.1"
 description = "Python library for calculating contours of 2D quadrilateral grids"
 optional = false
 python-versions = ">=3.9"
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 ]
 
 [package.dependencies]
-numpy = ">=1.20,<2.0"
+numpy = ">=1.20"
 
 [package.extras]
 bokeh = ["bokeh", "selenium"]
 docs = ["furo", "sphinx (>=7.2)", "sphinx-copybutton"]
-mypy = ["contourpy[bokeh,docs]", "docutils-stubs", "mypy (==1.6.1)", "types-Pillow"]
+mypy = ["contourpy[bokeh,docs]", "docutils-stubs", "mypy (==1.8.0)", "types-Pillow"]
 test = ["Pillow", "contourpy[test-no-images]", "matplotlib"]
 test-no-images = ["pytest", "pytest-cov", "pytest-xdist", "wurlitzer"]
 
@@ -356,63 +342,63 @@ test = ["altair", "baytune", "chocolate", "dask", "distributed", "kahypar", "mat
 
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 python-versions = "*"
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 name = "cutensornet-cu11"
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 description = "cuTensorNet - a component of NVIDIA cuQuantum SDK"
 optional = true
 python-versions = "*"
 files = [
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 [package.dependencies]
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+cutensor-cu11 = ">=2.0.1,<3"
 
 [[package]]
 name = "cycler"
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@@ -919,13 +905,13 @@ files = [
 
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@@ -934,17 +920,17 @@ zipp = ">=0.5"
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 [[package]]
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 [package.dependencies]
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 fonttools = ">=4.22.0"
 importlib-resources = {version = ">=3.2.0", markers = "python_version < \"3.10\""}
 kiwisolver = ">=1.3.1"
-numpy = ">=1.21,<2"
+numpy = ">=1.21"
 packaging = ">=20.0"
 pillow = ">=8"
 pyparsing = ">=2.3.1"
@@ -1464,32 +1432,32 @@ test = ["pytest (>=7.2)", "pytest-cov (>=4.0)"]
 
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 [package.dependencies]
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 description = "A Python Parser"
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 python-versions = ">=3.6"
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 [package.extras]
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+qa = ["flake8 (==5.0.4)", "mypy (==0.971)", "types-setuptools (==67.2.0.1)"]
+testing = ["docopt", "pytest"]
 
 [[package]]
 name = "pexpect"
@@ -1614,79 +1582,80 @@ files = [
 
 [[package]]
 name = "pillow"
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 python-versions = ">=3.8"
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@@ -2017,7 +1987,7 @@ files = [
 
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+version = "0.2.8"
 description = "A framework for quantum computing with hardware acceleration."
 optional = false
 python-versions = ">=3.9,<3.13"
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 tabulate = "^0.9.0"
 
 [package.extras]
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 tensorflow = ["tensorflow (>=2.16.1,<3.0.0)"]
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 [package.source]
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 tensor = ["matplotlib (>=2.0)", "networkx (>=2.3)"]
 tests = ["coverage", "pytest", "pytest-cov"]
 
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 [package.extras]
-dev = ["click", "cython-lint (>=0.12.2)", "doit (>=0.36.0)", "mypy", "pycodestyle", "pydevtool", "rich-click", "ruff", "types-psutil", "typing_extensions"]
-doc = ["jupytext", "matplotlib (>2)", "myst-nb", "numpydoc", "pooch", "pydata-sphinx-theme (==0.9.0)", "sphinx (!=4.1.0)", "sphinx-design (>=0.2.0)"]
-test = ["asv", "gmpy2", "hypothesis", "mpmath", "pooch", "pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "scikit-umfpack", "threadpoolctl"]
+dev = ["cython-lint (>=0.12.2)", "doit (>=0.36.0)", "mypy", "pycodestyle", "pydevtool", "rich-click", "ruff", "types-psutil", "typing_extensions"]
+doc = ["jupyterlite-pyodide-kernel", "jupyterlite-sphinx (>=0.12.0)", "jupytext", "matplotlib (>=3.5)", "myst-nb", "numpydoc", "pooch", "pydata-sphinx-theme (>=0.15.2)", "sphinx (>=5.0.0)", "sphinx-design (>=0.4.0)"]
+test = ["array-api-strict", "asv", "gmpy2", "hypothesis (>=6.30)", "mpmath", "pooch", "pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "scikit-umfpack", "threadpoolctl"]
 
 [[package]]
 name = "setuptools"
-version = "69.1.1"
+version = "69.2.0"
 description = "Easily download, build, install, upgrade, and uninstall Python packages"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "setuptools-69.1.1-py3-none-any.whl", hash = "sha256:02fa291a0471b3a18b2b2481ed902af520c69e8ae0919c13da936542754b4c56"},
-    {file = "setuptools-69.1.1.tar.gz", hash = "sha256:5c0806c7d9af348e6dd3777b4f4dbb42c7ad85b190104837488eab9a7c945cf8"},
+    {file = "setuptools-69.2.0-py3-none-any.whl", hash = "sha256:c21c49fb1042386df081cb5d86759792ab89efca84cf114889191cd09aacc80c"},
+    {file = "setuptools-69.2.0.tar.gz", hash = "sha256:0ff4183f8f42cd8fa3acea16c45205521a4ef28f73c6391d8a25e92893134f2e"},
 ]
 
 [package.extras]
 docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier"]
-testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "packaging (>=23.2)", "pip (>=19.1)", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-home (>=0.5)", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-ruff (>=0.2.1)", "pytest-timeout", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"]
+testing = ["build[virtualenv]", "filelock (>=3.4.0)", "importlib-metadata", "ini2toml[lite] (>=0.9)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "mypy (==1.9)", "packaging (>=23.2)", "pip (>=19.1)", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-home (>=0.5)", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-ruff (>=0.2.1)", "pytest-timeout", "pytest-xdist (>=3)", "tomli", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"]
 testing-integration = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "packaging (>=23.2)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"]
 
 [[package]]
@@ -2273,20 +2228,6 @@ sphinx = ">=1.8"
 code-style = ["pre-commit (==2.12.1)"]
 rtd = ["ipython", "myst-nb", "sphinx", "sphinx-book-theme", "sphinx-examples"]
 
-[[package]]
-name = "sphinx-markdown-tables"
-version = "0.0.17"
-description = "A Sphinx extension for rendering tables written in markdown"
-optional = false
-python-versions = "*"
-files = [
-    {file = "sphinx-markdown-tables-0.0.17.tar.gz", hash = "sha256:6bc6d3d400eaccfeebd288446bc08dd83083367c58b85d40fe6c12d77ef592f1"},
-    {file = "sphinx_markdown_tables-0.0.17-py3-none-any.whl", hash = "sha256:2bd0c30779653e4dd120300cbd9ca412c480738cc2241f6dea477a883f299e04"},
-]
-
-[package.dependencies]
-markdown = ">=3.4"
-
 [[package]]
 name = "sphinxcontrib-applehelp"
 version = "1.0.8"
@@ -2496,28 +2437,28 @@ telegram = ["requests"]
 
 [[package]]
 name = "traitlets"
-version = "5.14.1"
+version = "5.14.2"
 description = "Traitlets Python configuration system"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "traitlets-5.14.1-py3-none-any.whl", hash = "sha256:2e5a030e6eff91737c643231bfcf04a65b0132078dad75e4936700b213652e74"},
-    {file = "traitlets-5.14.1.tar.gz", hash = "sha256:8585105b371a04b8316a43d5ce29c098575c2e477850b62b848b964f1444527e"},
+    {file = "traitlets-5.14.2-py3-none-any.whl", hash = "sha256:fcdf85684a772ddeba87db2f398ce00b40ff550d1528c03c14dbf6a02003cd80"},
+    {file = "traitlets-5.14.2.tar.gz", hash = "sha256:8cdd83c040dab7d1dee822678e5f5d100b514f7b72b01615b26fc5718916fdf9"},
 ]
 
 [package.extras]
 docs = ["myst-parser", "pydata-sphinx-theme", "sphinx"]
-test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,<7.5)", "pytest-mock", "pytest-mypy-testing"]
+test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,<8.1)", "pytest-mock", "pytest-mypy-testing"]
 
 [[package]]
 name = "typing-extensions"
-version = "4.10.0"
+version = "4.11.0"
 description = "Backported and Experimental Type Hints for Python 3.8+"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "typing_extensions-4.10.0-py3-none-any.whl", hash = "sha256:69b1a937c3a517342112fb4c6df7e72fc39a38e7891a5730ed4985b5214b5475"},
-    {file = "typing_extensions-4.10.0.tar.gz", hash = "sha256:b0abd7c89e8fb96f98db18d86106ff1d90ab692004eb746cf6eda2682f91b3cb"},
+    {file = "typing_extensions-4.11.0-py3-none-any.whl", hash = "sha256:c1f94d72897edaf4ce775bb7558d5b79d8126906a14ea5ed1635921406c0387a"},
+    {file = "typing_extensions-4.11.0.tar.gz", hash = "sha256:83f085bd5ca59c80295fc2a82ab5dac679cbe02b9f33f7d83af68e241bea51b0"},
 ]
 
 [[package]]
@@ -2550,18 +2491,18 @@ files = [
 
 [[package]]
 name = "zipp"
-version = "3.17.0"
+version = "3.18.1"
 description = "Backport of pathlib-compatible object wrapper for zip files"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "zipp-3.17.0-py3-none-any.whl", hash = "sha256:0e923e726174922dce09c53c59ad483ff7bbb8e572e00c7f7c46b88556409f31"},
-    {file = "zipp-3.17.0.tar.gz", hash = "sha256:84e64a1c28cf7e91ed2078bb8cc8c259cb19b76942096c8d7b84947690cabaf0"},
+    {file = "zipp-3.18.1-py3-none-any.whl", hash = "sha256:206f5a15f2af3dbaee80769fb7dc6f249695e940acca08dfb2a4769fe61e538b"},
+    {file = "zipp-3.18.1.tar.gz", hash = "sha256:2884ed22e7d8961de1c9a05142eb69a247f120291bc0206a00a7642f09b5b715"},
 ]
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
-testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"]
 
 [extras]
 cuda = ["cupy-cuda11x", "cuquantum-python-cu11", "mpi4py"]
@@ -2569,4 +2510,4 @@ cuda = ["cupy-cuda11x", "cuquantum-python-cu11", "mpi4py"]
 [metadata]
 lock-version = "2.0"
 python-versions = "^3.9,<3.13"
-content-hash = "79e524fa71deab63c21bc4b27e082792a0c17f3aff3fe1bcb19f6de80f191e38"
+content-hash = "ca813657a7053abafcb57bf986a5a1d4618dc18f155daddced6619f34a5570fb"
diff --git a/pyproject.toml b/pyproject.toml
index bc6fa3c..abe2b2c 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -34,11 +34,9 @@ cuda = ["cupy-cuda11x", "cuquantum-python-cu11", "mpi4py"]
 optional = true
 
 [tool.poetry.group.docs.dependencies]
-Sphinx = "^5.0.0"
+Sphinx = "^5.3.0"
 furo = "^2023.3.27"
-sphinxcontrib-bibtex = "^2.4.1"
-recommonmark = "^0.7.1"
-sphinx_markdown_tables = "^0.0.17"
+sphinxcontrib-bibtex = "^2.5.0"
 sphinx-copybutton = "^0.5.2"
 sphinxcontrib-katex = "^0.9.9"
 # to prevent Quimb warning