Compare commits

..

21 Commits

Author SHA1 Message Date
cc06e30404 Apply async Sync optimization to Z4c_class using Sync_start/finish pattern
Replaces blocking Parallel::Sync + MPI_Allreduce in Z4c_class Step() with
non-blocking MPI_Iallreduce overlapped with Sync_start/Sync_finish, matching
the pattern already used in bssn_class on cjy-oneapi-opus-hotfix. Covers both ABEtype==2
and CPBC variants (predictor + corrector = 4 call sites).

Cherry-picked optimization from afd4006, adapted to SyncCache
infrastructure instead of the separate SyncPlan API.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-02-20 09:58:26 +08:00
25c79dc7cd Merge lopsided advection + kodis dissipation to share symmetry_bd buffer
Cherry-picked from 38c2c30.
2026-02-20 09:57:51 +08:00
a725d34dd3 Don't hardcode pgo profile path 2026-02-20 08:48:25 +08:00
2791d2e225 Merge pull request 'PGO updated' (#1) from cjy-oneapi-opus-hotfix into main
Reviewed-on: #1
2026-02-11 19:17:35 +08:00
72ce153e48 Merge cjy-oneapi-opus-hotfix into main 2026-02-11 19:15:12 +08:00
5b7e05cd32 PGO updated 2026-02-11 18:26:30 +08:00
85afe00fc5 Merge plotting optimizations from chb-copilot-test
- Implement multiprocessing-based parallel plotting
- Add parallel_plot_helper.py for concurrent plot task execution
- Use matplotlib 'Agg' backend for multiprocessing safety
- Set OMP_NUM_THREADS=1 to prevent BLAS thread explosion
- Use subprocess for binary data plots to avoid thread conflicts
- Add fork bomb protection in main program

This merge only includes plotting improvements and excludes
MPI communication changes to preserve existing optimizations.

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
2026-02-11 16:19:17 +08:00
5c1790277b Replace nested OutBdLow2Hi loops with batch calls in RestrictProlong
The 8 nested while(Ppc){while(Pp){OutBdLow2Hi(single,single,...)}}
loops across RestrictProlong (3 overloads) and ProlongRestrict each
produced N_c × N_f separate transfer() → MPI_Waitall barriers.
Replace with the existing batch OutBdLow2Hi(MyList<Patch>*,...) which
merges all patch pairs into a single transfer() call with 1 MPI_Waitall.

Also add Restrict_cached, OutBdLow2Hi_cached, OutBdLow2Himix_cached
to Parallel (unused for now — kept as infrastructure for future use).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-02-11 16:09:08 +08:00
e09ae438a2 Cache data_packer lengths in Sync_start to skip redundant buffer-size traversals
The data_packer(NULL, ...) calls that compute send/recv buffer lengths
traverse all grid segments × variables × nprocs on every Sync_start
invocation, even though lengths never change once the cache is built.
Add a lengths_valid flag to SyncCache so these length computations are
done once and reused on subsequent calls (4× per RK4 step).

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-02-10 21:39:22 +08:00
d06d5b4db8 Add targeted point-to-point Interp_Points overload for surface_integral
Instead of broadcasting all interpolated point data to every MPI rank,
the new overload sends each point only to the one rank that needs it
for integration, reducing communication volume by ~nprocs times.

The consumer rank is computed deterministically using the same Nmin/Nmax
work distribution formula used by surface_integral callers. Two active
call sites (surf_Wave and surf_MassPAng with MPI_COMM_WORLD) now use
the new overload. Other callers (ShellPatch, Comm_here variants, etc.)
remain unchanged.

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-02-10 19:18:56 +08:00
50e2a845f8 Replace MPI_Allreduce with owner-rank MPI_Bcast in Patch::Interp_Points
The two MPI_Allreduce calls (data + weight) were the #1 hotspot at 38.5%
CPU time. Since all ranks traverse the same block list and agree on point
ownership, we replace the global reduction with targeted MPI_Bcast from
each owner rank. This also eliminates the weight array/Allreduce entirely,
removes redundant heap allocations (shellf, weight, DH, llb, uub), and
writes interpolation results directly into the output buffer.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-02-09 22:39:18 +08:00
738498cb28 Optimize MPI communication in RestrictProlong and surface_integral
Cache Sync in RestrictProlong: replace 11 basic Parallel::Sync() calls
with Parallel::Sync_cached() across RestrictProlong, RestrictProlong_aux,
and ProlongRestrict to avoid rebuilding grid segment lists every call.

Merge paired MPI_Allreduce in surface_integral: combine 9 pairs of
consecutive RP/IP Allreduce calls into single calls with count=2*NN.

Merge scalar MPI_Allreduce in surf_MassPAng: combine 3 groups of 7
scalar Allreduce calls (mass + angular/linear momentum) into single
calls with count=7.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-02-09 22:07:12 +08:00
42b9cf1ad9 Optimize MPI Sync with merged transfers, caching, and async overlap
Phase 1: Merge N+1 transfer() calls into a single transfer() per
Sync(PatchList), reducing N+1 MPI_Waitall barriers to 1 via new
Sync_merged() that collects all intra-patch and inter-patch grid
segment lists into combined per-rank arrays.

Phase 2: Cache grid segment lists and reuse grow-only communication
buffers across RK4 substeps via SyncCache struct. Caches are per-level
and per-variable-list (predictor/corrector), invalidated on regrid.
Eliminates redundant build_ghost_gsl/build_owned_gsl0/build_gstl
rebuilds and malloc/free cycles between regrids.

Phase 3: Split Sync into async Sync_start/Sync_finish to overlap
Cartesian ghost zone exchange (MPI_Isend/Irecv) with Shell patch
synchronization. Uses MPI tag 2 to avoid conflicts with SH->Synch()
which uses transfer() with tag 1.

Also updates makefile.inc paths and flags for local build environment.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-02-09 21:03:37 +08:00
e9d321fd00 Convert MPI_Allreduce error checks to non-blocking MPI_Iallreduce overlapped with Sync
Replace all 8 blocking MPI_Allreduce error-check calls with MPI_Iallreduce,
overlapping the reduction with subsequent Parallel::Sync/SH->Synch operations.
MPI_Wait is called after Sync completes to retrieve the error result.

This hides the Allreduce latency (46.5% of CPU time) behind the ghost zone
exchange communication that must happen anyway. Safe because Sync only copies
existing data to ghost zones and the error check + abort happens before any
further computation uses the synced data.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-02-09 12:39:29 +08:00
ed1d86ade9 Merge paired MPI_Allreduce error checks to reduce global sync barriers
In the two Step() functions that handle both Patch and Shell Patch,
defer the Patch error check until after Shell Patch computation completes,
then perform a single combined MPI_Allreduce instead of two separate ones.
This eliminates 4 MPI_Allreduce calls per timestep (2 per Step function,
Predictor + Corrector phases each). The optimization is mathematically
equivalent: in normal execution (no NaN) behavior is identical; on error,
both Patch and Shell data are dumped before MPI_Abort.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-02-09 12:12:16 +08:00
471baa5065 PGO supported 2026-02-09 10:59:26 +08:00
4bb6c03013 makefile setting updated 2026-02-08 16:14:43 +08:00
b8e41b2b39 Only enable OpenMP for TwoPunctures 2026-02-08 13:00:37 +08:00
133e4f13a2 Use OpenMP's parallel for with schedule(dynamic,1) 2026-02-07 19:48:24 +08:00
914c4f4791 Optimize memory allocation in JFD_times_dv
This should reduce the pressure on the memory allocator, indirectly improving caching behavior.

Co-authored-by: copilot-swe-agent[bot] <198982749+copilot@users.noreply.github.com>
2026-02-07 15:55:45 +08:00
CGH0S7
79af79d471 baseline updated 2026-02-05 19:53:55 +08:00
26 changed files with 3256 additions and 1624 deletions

View File

@@ -1,447 +0,0 @@
##################################################################
##
## AMSS-NCKU ABE Test Program (Skip TwoPuncture if data exists)
## Modified from AMSS_NCKU_Program.py
## Author: Xiaoqu
## Modified: 2026/02/01
##
##################################################################
##################################################################
## Print program introduction
import print_information
print_information.print_program_introduction()
##################################################################
import AMSS_NCKU_Input as input_data
##################################################################
## Create directories to store program run data
import os
import shutil
import sys
import time
## Set the output directory according to the input file
File_directory = os.path.join(input_data.File_directory)
## Check if output directory exists and if TwoPuncture data is available
#skip_twopuncture = False
skip_twopuncture = True
output_directory = os.path.join(File_directory, "AMSS_NCKU_output")
binary_results_directory = os.path.join(output_directory, input_data.Output_directory)
if os.path.exists(File_directory):
print( " Output directory already exists." )
print()
'''
# Check if TwoPuncture initial data files exist
if (input_data.Initial_Data_Method == "Ansorg-TwoPuncture"):
twopuncture_output = os.path.join(output_directory, "TwoPunctureABE")
input_par = os.path.join(output_directory, "input.par")
if os.path.exists(twopuncture_output) and os.path.exists(input_par):
print( " Found existing TwoPuncture initial data." )
print( " Do you want to skip TwoPuncture phase and reuse existing data?" )
print( " Input 'skip' to skip TwoPuncture and start ABE directly" )
print( " Input 'regenerate' to regenerate everything from scratch" )
print()
while True:
try:
inputvalue = input()
if ( inputvalue == "skip" ):
print( " Skipping TwoPuncture phase, will reuse existing initial data." )
print()
skip_twopuncture = True
break
elif ( inputvalue == "regenerate" ):
print( " Regenerating everything from scratch." )
print()
skip_twopuncture = False
break
else:
print( " Please input 'skip' or 'regenerate'." )
except ValueError:
print( " Please input 'skip' or 'regenerate'." )
else:
print( " TwoPuncture initial data not found, will regenerate everything." )
print()
'''
# If not skipping, remove and recreate directory
if not skip_twopuncture:
shutil.rmtree(File_directory, ignore_errors=True)
os.mkdir(File_directory)
os.mkdir(output_directory)
os.mkdir(binary_results_directory)
figure_directory = os.path.join(File_directory, "figure")
os.mkdir(figure_directory)
shutil.copy("AMSS_NCKU_Input.py", File_directory)
print( " Output directory has been regenerated." )
print()
else:
# Create fresh directory structure
os.mkdir(File_directory)
shutil.copy("AMSS_NCKU_Input.py", File_directory)
os.mkdir(output_directory)
os.mkdir(binary_results_directory)
figure_directory = os.path.join(File_directory, "figure")
os.mkdir(figure_directory)
print( " Output directory has been generated." )
print()
# Ensure figure directory exists
figure_directory = os.path.join(File_directory, "figure")
if not os.path.exists(figure_directory):
os.mkdir(figure_directory)
##################################################################
## Output related parameter information
import setup
## Print and save input parameter information
setup.print_input_data( File_directory )
if not skip_twopuncture:
setup.generate_AMSSNCKU_input()
setup.print_puncture_information()
##################################################################
## Generate AMSS-NCKU program input files based on the configured parameters
if not skip_twopuncture:
print()
print( " Generating the AMSS-NCKU input parfile for the ABE executable." )
print()
## Generate cgh-related input files from the grid information
import numerical_grid
numerical_grid.append_AMSSNCKU_cgh_input()
print()
print( " The input parfile for AMSS-NCKU C++ executable file ABE has been generated." )
print( " However, the input relevant to TwoPuncture need to be appended later." )
print()
##################################################################
## Plot the initial grid configuration
if not skip_twopuncture:
print()
print( " Schematically plot the numerical grid structure." )
print()
import numerical_grid
numerical_grid.plot_initial_grid()
##################################################################
## Generate AMSS-NCKU macro files according to the numerical scheme and parameters
if not skip_twopuncture:
print()
print( " Automatically generating the macro file for AMSS-NCKU C++ executable file ABE " )
print( " (Based on the finite-difference numerical scheme) " )
print()
import generate_macrodef
generate_macrodef.generate_macrodef_h()
print( " AMSS-NCKU macro file macrodef.h has been generated. " )
generate_macrodef.generate_macrodef_fh()
print( " AMSS-NCKU macro file macrodef.fh has been generated. " )
##################################################################
# Compile the AMSS-NCKU program according to user requirements
# NOTE: ABE compilation is always performed, even when skipping TwoPuncture
print()
print( " Preparing to compile and run the AMSS-NCKU code as requested " )
print( " Compiling the AMSS-NCKU code based on the generated macro files " )
print()
AMSS_NCKU_source_path = "AMSS_NCKU_source"
AMSS_NCKU_source_copy = os.path.join(File_directory, "AMSS_NCKU_source_copy")
## If AMSS_NCKU source folder is missing, create it and prompt the user
if not os.path.exists(AMSS_NCKU_source_path):
os.makedirs(AMSS_NCKU_source_path)
print( " The AMSS-NCKU source files are incomplete; copy all source files into ./AMSS_NCKU_source. " )
print( " Press Enter to continue. " )
inputvalue = input()
# Copy AMSS-NCKU source files to prepare for compilation
# If skipping TwoPuncture and source_copy already exists, remove it first
if skip_twopuncture and os.path.exists(AMSS_NCKU_source_copy):
shutil.rmtree(AMSS_NCKU_source_copy)
shutil.copytree(AMSS_NCKU_source_path, AMSS_NCKU_source_copy)
# Copy the generated macro files into the AMSS_NCKU source folder
if not skip_twopuncture:
macrodef_h_path = os.path.join(File_directory, "macrodef.h")
macrodef_fh_path = os.path.join(File_directory, "macrodef.fh")
else:
# When skipping TwoPuncture, use existing macro files from previous run
macrodef_h_path = os.path.join(File_directory, "macrodef.h")
macrodef_fh_path = os.path.join(File_directory, "macrodef.fh")
shutil.copy2(macrodef_h_path, AMSS_NCKU_source_copy)
shutil.copy2(macrodef_fh_path, AMSS_NCKU_source_copy)
# Compile related programs
import makefile_and_run
## Change working directory to the target source copy
os.chdir(AMSS_NCKU_source_copy)
## Build the main AMSS-NCKU executable (ABE or ABEGPU)
makefile_and_run.makefile_ABE()
## If the initial-data method is Ansorg-TwoPuncture, build the TwoPunctureABE executable
## Only build TwoPunctureABE if not skipping TwoPuncture phase
if (input_data.Initial_Data_Method == "Ansorg-TwoPuncture" ) and not skip_twopuncture:
makefile_and_run.makefile_TwoPunctureABE()
## Change current working directory back up two levels
os.chdir('..')
os.chdir('..')
print()
##################################################################
## Copy the AMSS-NCKU executable (ABE/ABEGPU) to the run directory
if (input_data.GPU_Calculation == "no"):
ABE_file = os.path.join(AMSS_NCKU_source_copy, "ABE")
elif (input_data.GPU_Calculation == "yes"):
ABE_file = os.path.join(AMSS_NCKU_source_copy, "ABEGPU")
if not os.path.exists( ABE_file ):
print()
print( " Lack of AMSS-NCKU executable file ABE/ABEGPU; recompile AMSS_NCKU_source manually. " )
print( " When recompilation is finished, press Enter to continue. " )
inputvalue = input()
## Copy the executable ABE (or ABEGPU) into the run directory
shutil.copy2(ABE_file, output_directory)
## If the initial-data method is TwoPuncture, copy the TwoPunctureABE executable to the run directory
## Only copy TwoPunctureABE if not skipping TwoPuncture phase
if (input_data.Initial_Data_Method == "Ansorg-TwoPuncture" ) and not skip_twopuncture:
TwoPuncture_file = os.path.join(AMSS_NCKU_source_copy, "TwoPunctureABE")
if not os.path.exists( TwoPuncture_file ):
print()
print( " Lack of AMSS-NCKU executable file TwoPunctureABE; recompile TwoPunctureABE in AMSS_NCKU_source. " )
print( " When recompilation is finished, press Enter to continue. " )
inputvalue = input()
## Copy the TwoPunctureABE executable into the run directory
shutil.copy2(TwoPuncture_file, output_directory)
##################################################################
## If the initial-data method is TwoPuncture, generate the TwoPuncture input files
if (input_data.Initial_Data_Method == "Ansorg-TwoPuncture" ) and not skip_twopuncture:
print()
print( " Initial data is chosen as Ansorg-TwoPuncture" )
print()
print()
print( " Automatically generating the input parfile for the TwoPunctureABE executable " )
print()
import generate_TwoPuncture_input
generate_TwoPuncture_input.generate_AMSSNCKU_TwoPuncture_input()
print()
print( " The input parfile for the TwoPunctureABE executable has been generated. " )
print()
## Generated AMSS-NCKU TwoPuncture input filename
AMSS_NCKU_TwoPuncture_inputfile = 'AMSS-NCKU-TwoPuncture.input'
AMSS_NCKU_TwoPuncture_inputfile_path = os.path.join( File_directory, AMSS_NCKU_TwoPuncture_inputfile )
## Copy and rename the file
shutil.copy2( AMSS_NCKU_TwoPuncture_inputfile_path, os.path.join(output_directory, 'TwoPunctureinput.par') )
## Run TwoPuncture to generate initial-data files
start_time = time.time() # Record start time
print()
print()
## Change to the output (run) directory
os.chdir(output_directory)
## Run the TwoPuncture executable
import makefile_and_run
makefile_and_run.run_TwoPunctureABE()
## Change current working directory back up two levels
os.chdir('..')
os.chdir('..')
elif (input_data.Initial_Data_Method == "Ansorg-TwoPuncture" ) and skip_twopuncture:
print()
print( " Skipping TwoPuncture execution, using existing initial data." )
print()
start_time = time.time() # Record start time for ABE only
else:
start_time = time.time() # Record start time
##################################################################
## Update puncture data based on TwoPuncture run results
if not skip_twopuncture:
import renew_puncture_parameter
renew_puncture_parameter.append_AMSSNCKU_BSSN_input(File_directory, output_directory)
## Generated AMSS-NCKU input filename
AMSS_NCKU_inputfile = 'AMSS-NCKU.input'
AMSS_NCKU_inputfile_path = os.path.join(File_directory, AMSS_NCKU_inputfile)
## Copy and rename the file
shutil.copy2( AMSS_NCKU_inputfile_path, os.path.join(output_directory, 'input.par') )
print()
print( " Successfully copy all AMSS-NCKU input parfile to target dictionary. " )
print()
else:
print()
print( " Using existing input.par file from previous run." )
print()
##################################################################
## Launch the AMSS-NCKU program
print()
print()
## Change to the run directory
os.chdir( output_directory )
import makefile_and_run
makefile_and_run.run_ABE()
## Change current working directory back up two levels
os.chdir('..')
os.chdir('..')
end_time = time.time()
elapsed_time = end_time - start_time
##################################################################
## Copy some basic input and log files out to facilitate debugging
## Path to the file that stores calculation settings
AMSS_NCKU_error_file_path = os.path.join(binary_results_directory, "setting.par")
## Copy and rename the file for easier inspection
shutil.copy( AMSS_NCKU_error_file_path, os.path.join(output_directory, "AMSSNCKU_setting_parameter") )
## Path to the error log file
AMSS_NCKU_error_file_path = os.path.join(binary_results_directory, "Error.log")
## Copy and rename the error log
shutil.copy( AMSS_NCKU_error_file_path, os.path.join(output_directory, "Error.log") )
## Primary program outputs
AMSS_NCKU_BH_data = os.path.join(binary_results_directory, "bssn_BH.dat" )
AMSS_NCKU_ADM_data = os.path.join(binary_results_directory, "bssn_ADMQs.dat" )
AMSS_NCKU_psi4_data = os.path.join(binary_results_directory, "bssn_psi4.dat" )
AMSS_NCKU_constraint_data = os.path.join(binary_results_directory, "bssn_constraint.dat")
## copy and rename the file
shutil.copy( AMSS_NCKU_BH_data, os.path.join(output_directory, "bssn_BH.dat" ) )
shutil.copy( AMSS_NCKU_ADM_data, os.path.join(output_directory, "bssn_ADMQs.dat" ) )
shutil.copy( AMSS_NCKU_psi4_data, os.path.join(output_directory, "bssn_psi4.dat" ) )
shutil.copy( AMSS_NCKU_constraint_data, os.path.join(output_directory, "bssn_constraint.dat") )
## Additional program outputs
if (input_data.Equation_Class == "BSSN-EM"):
AMSS_NCKU_phi1_data = os.path.join(binary_results_directory, "bssn_phi1.dat" )
AMSS_NCKU_phi2_data = os.path.join(binary_results_directory, "bssn_phi2.dat" )
shutil.copy( AMSS_NCKU_phi1_data, os.path.join(output_directory, "bssn_phi1.dat" ) )
shutil.copy( AMSS_NCKU_phi2_data, os.path.join(output_directory, "bssn_phi2.dat" ) )
elif (input_data.Equation_Class == "BSSN-EScalar"):
AMSS_NCKU_maxs_data = os.path.join(binary_results_directory, "bssn_maxs.dat" )
shutil.copy( AMSS_NCKU_maxs_data, os.path.join(output_directory, "bssn_maxs.dat" ) )
##################################################################
## Plot the AMSS-NCKU program results
print()
print( " Plotting the txt and binary results data from the AMSS-NCKU simulation " )
print()
import plot_xiaoqu
import plot_GW_strain_amplitude_xiaoqu
## Plot black hole trajectory
plot_xiaoqu.generate_puncture_orbit_plot( binary_results_directory, figure_directory )
plot_xiaoqu.generate_puncture_orbit_plot3D( binary_results_directory, figure_directory )
## Plot black hole separation vs. time
plot_xiaoqu.generate_puncture_distence_plot( binary_results_directory, figure_directory )
## Plot gravitational waveforms (psi4 and strain amplitude)
for i in range(input_data.Detector_Number):
plot_xiaoqu.generate_gravitational_wave_psi4_plot( binary_results_directory, figure_directory, i )
plot_GW_strain_amplitude_xiaoqu.generate_gravitational_wave_amplitude_plot( binary_results_directory, figure_directory, i )
## Plot ADM mass evolution
for i in range(input_data.Detector_Number):
plot_xiaoqu.generate_ADMmass_plot( binary_results_directory, figure_directory, i )
## Plot Hamiltonian constraint violation over time
for i in range(input_data.grid_level):
plot_xiaoqu.generate_constraint_check_plot( binary_results_directory, figure_directory, i )
## Plot stored binary data
plot_xiaoqu.generate_binary_data_plot( binary_results_directory, figure_directory )
print()
print( f" This Program Cost = {elapsed_time} Seconds " )
print()
##################################################################
print()
print( " The AMSS-NCKU-Python simulation is successfully finished, thanks for using !!! " )
print()
##################################################################

View File

@@ -8,6 +8,14 @@
## ##
################################################################## ##################################################################
## Guard against re-execution by multiprocessing child processes.
## Without this, using 'spawn' or 'forkserver' context would cause every
## worker to re-run the entire script, spawning exponentially more
## workers (fork bomb).
if __name__ != '__main__':
import sys as _sys
_sys.exit(0)
################################################################## ##################################################################
@@ -424,26 +432,31 @@ print(
import plot_xiaoqu import plot_xiaoqu
import plot_GW_strain_amplitude_xiaoqu import plot_GW_strain_amplitude_xiaoqu
from parallel_plot_helper import run_plot_tasks_parallel
plot_tasks = []
## Plot black hole trajectory ## Plot black hole trajectory
plot_xiaoqu.generate_puncture_orbit_plot( binary_results_directory, figure_directory ) plot_tasks.append( ( plot_xiaoqu.generate_puncture_orbit_plot, (binary_results_directory, figure_directory) ) )
plot_xiaoqu.generate_puncture_orbit_plot3D( binary_results_directory, figure_directory ) plot_tasks.append( ( plot_xiaoqu.generate_puncture_orbit_plot3D, (binary_results_directory, figure_directory) ) )
## Plot black hole separation vs. time ## Plot black hole separation vs. time
plot_xiaoqu.generate_puncture_distence_plot( binary_results_directory, figure_directory ) plot_tasks.append( ( plot_xiaoqu.generate_puncture_distence_plot, (binary_results_directory, figure_directory) ) )
## Plot gravitational waveforms (psi4 and strain amplitude) ## Plot gravitational waveforms (psi4 and strain amplitude)
for i in range(input_data.Detector_Number): for i in range(input_data.Detector_Number):
plot_xiaoqu.generate_gravitational_wave_psi4_plot( binary_results_directory, figure_directory, i ) plot_tasks.append( ( plot_xiaoqu.generate_gravitational_wave_psi4_plot, (binary_results_directory, figure_directory, i) ) )
plot_GW_strain_amplitude_xiaoqu.generate_gravitational_wave_amplitude_plot( binary_results_directory, figure_directory, i ) plot_tasks.append( ( plot_GW_strain_amplitude_xiaoqu.generate_gravitational_wave_amplitude_plot, (binary_results_directory, figure_directory, i) ) )
## Plot ADM mass evolution ## Plot ADM mass evolution
for i in range(input_data.Detector_Number): for i in range(input_data.Detector_Number):
plot_xiaoqu.generate_ADMmass_plot( binary_results_directory, figure_directory, i ) plot_tasks.append( ( plot_xiaoqu.generate_ADMmass_plot, (binary_results_directory, figure_directory, i) ) )
## Plot Hamiltonian constraint violation over time ## Plot Hamiltonian constraint violation over time
for i in range(input_data.grid_level): for i in range(input_data.grid_level):
plot_xiaoqu.generate_constraint_check_plot( binary_results_directory, figure_directory, i ) plot_tasks.append( ( plot_xiaoqu.generate_constraint_check_plot, (binary_results_directory, figure_directory, i) ) )
run_plot_tasks_parallel(plot_tasks)
## Plot stored binary data ## Plot stored binary data
plot_xiaoqu.generate_binary_data_plot( binary_results_directory, figure_directory ) plot_xiaoqu.generate_binary_data_plot( binary_results_directory, figure_directory )

View File

@@ -341,8 +341,9 @@ void Patch::Interp_Points(MyList<var> *VarList,
double *Shellf, int Symmetry) double *Shellf, int Symmetry)
{ {
// NOTE: we do not Synchnize variables here, make sure of that before calling this routine // NOTE: we do not Synchnize variables here, make sure of that before calling this routine
int myrank; int myrank, nprocs;
MPI_Comm_rank(MPI_COMM_WORLD, &myrank); MPI_Comm_rank(MPI_COMM_WORLD, &myrank);
MPI_Comm_size(MPI_COMM_WORLD, &nprocs);
int ordn = 2 * ghost_width; int ordn = 2 * ghost_width;
MyList<var> *varl; MyList<var> *varl;
@@ -354,24 +355,18 @@ void Patch::Interp_Points(MyList<var> *VarList,
varl = varl->next; varl = varl->next;
} }
double *shellf; memset(Shellf, 0, sizeof(double) * NN * num_var);
shellf = new double[NN * num_var];
memset(shellf, 0, sizeof(double) * NN * num_var);
// we use weight to monitor code, later some day we can move it for optimization // owner_rank[j] records which MPI rank owns point j
int *weight; // All ranks traverse the same block list so they all agree on ownership
weight = new int[NN]; int *owner_rank;
memset(weight, 0, sizeof(int) * NN); owner_rank = new int[NN];
for (int j = 0; j < NN; j++)
double *DH, *llb, *uub; owner_rank[j] = -1;
DH = new double[dim];
double DH[dim], llb[dim], uub[dim];
for (int i = 0; i < dim; i++) for (int i = 0; i < dim; i++)
{
DH[i] = getdX(i); DH[i] = getdX(i);
}
llb = new double[dim];
uub = new double[dim];
for (int j = 0; j < NN; j++) // run along points for (int j = 0; j < NN; j++) // run along points
{ {
@@ -403,12 +398,6 @@ void Patch::Interp_Points(MyList<var> *VarList,
bool flag = true; bool flag = true;
for (int i = 0; i < dim; i++) for (int i = 0; i < dim; i++)
{ {
// NOTE: our dividing structure is (exclude ghost)
// -1 0
// 1 2
// so (0,1) does not belong to any part for vertex structure
// here we put (0,0.5) to left part and (0.5,1) to right part
// BUT for cell structure the bbox is (-1.5,0.5) and (0.5,2.5), there is no missing region at all
#ifdef Vertex #ifdef Vertex
#ifdef Cell #ifdef Cell
#error Both Cell and Vertex are defined #error Both Cell and Vertex are defined
@@ -433,6 +422,7 @@ void Patch::Interp_Points(MyList<var> *VarList,
if (flag) if (flag)
{ {
notfind = false; notfind = false;
owner_rank[j] = BP->rank;
if (myrank == BP->rank) if (myrank == BP->rank)
{ {
//---> interpolation //---> interpolation
@@ -440,14 +430,11 @@ void Patch::Interp_Points(MyList<var> *VarList,
int k = 0; int k = 0;
while (varl) // run along variables while (varl) // run along variables
{ {
// shellf[j*num_var+k] = Parallel::global_interp(dim,BP->shape,BP->X,BP->fgfs[varl->data->sgfn], f_global_interp(BP->shape, BP->X[0], BP->X[1], BP->X[2], BP->fgfs[varl->data->sgfn], Shellf[j * num_var + k],
// pox,ordn,varl->data->SoA,Symmetry);
f_global_interp(BP->shape, BP->X[0], BP->X[1], BP->X[2], BP->fgfs[varl->data->sgfn], shellf[j * num_var + k],
pox[0], pox[1], pox[2], ordn, varl->data->SoA, Symmetry); pox[0], pox[1], pox[2], ordn, varl->data->SoA, Symmetry);
varl = varl->next; varl = varl->next;
k++; k++;
} }
weight[j] = 1;
} }
} }
if (Bp == ble) if (Bp == ble)
@@ -456,103 +443,327 @@ void Patch::Interp_Points(MyList<var> *VarList,
} }
} }
MPI_Allreduce(shellf, Shellf, NN * num_var, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); // Replace MPI_Allreduce with per-owner MPI_Bcast:
int *Weight; // Group consecutive points by owner rank and broadcast each group.
Weight = new int[NN]; // Since each point's data is non-zero only on the owner rank,
MPI_Allreduce(weight, Weight, NN, MPI_INT, MPI_SUM, MPI_COMM_WORLD); // Bcast from owner is equivalent to Allreduce(MPI_SUM) but much cheaper.
// misc::tillherecheck("print me");
for (int i = 0; i < NN; i++)
{ {
if (Weight[i] > 1) int j = 0;
while (j < NN)
{ {
if (myrank == 0) int cur_owner = owner_rank[j];
cout << "WARNING: Patch::Interp_Points meets multiple weight" << endl; if (cur_owner < 0)
for (int j = 0; j < num_var; j++) {
Shellf[j + i * num_var] = Shellf[j + i * num_var] / Weight[i]; if (myrank == 0)
{
cout << "ERROR: Patch::Interp_Points fails to find point (";
for (int d = 0; d < dim; d++)
{
cout << XX[d][j];
if (d < dim - 1)
cout << ",";
else
cout << ")";
}
cout << " on Patch (";
for (int d = 0; d < dim; d++)
{
cout << bbox[d] << "+" << lli[d] * DH[d];
if (d < dim - 1)
cout << ",";
else
cout << ")--";
}
cout << "(";
for (int d = 0; d < dim; d++)
{
cout << bbox[dim + d] << "-" << uui[d] * DH[d];
if (d < dim - 1)
cout << ",";
else
cout << ")" << endl;
}
MPI_Abort(MPI_COMM_WORLD, 1);
}
j++;
continue;
}
// Find contiguous run of points with the same owner
int jstart = j;
while (j < NN && owner_rank[j] == cur_owner)
j++;
int count = (j - jstart) * num_var;
MPI_Bcast(Shellf + jstart * num_var, count, MPI_DOUBLE, cur_owner, MPI_COMM_WORLD);
} }
else if (Weight[i] == 0 && myrank == 0) }
delete[] owner_rank;
}
void Patch::Interp_Points(MyList<var> *VarList,
int NN, double **XX,
double *Shellf, int Symmetry,
int Nmin_consumer, int Nmax_consumer)
{
// Targeted point-to-point overload: each owner sends each point only to
// the one rank that needs it for integration (consumer), reducing
// communication volume by ~nprocs times compared to the Bcast version.
int myrank, nprocs;
MPI_Comm_rank(MPI_COMM_WORLD, &myrank);
MPI_Comm_size(MPI_COMM_WORLD, &nprocs);
int ordn = 2 * ghost_width;
MyList<var> *varl;
int num_var = 0;
varl = VarList;
while (varl)
{
num_var++;
varl = varl->next;
}
memset(Shellf, 0, sizeof(double) * NN * num_var);
// owner_rank[j] records which MPI rank owns point j
int *owner_rank;
owner_rank = new int[NN];
for (int j = 0; j < NN; j++)
owner_rank[j] = -1;
double DH[dim], llb[dim], uub[dim];
for (int i = 0; i < dim; i++)
DH[i] = getdX(i);
// --- Interpolation phase (identical to original) ---
for (int j = 0; j < NN; j++)
{
double pox[dim];
for (int i = 0; i < dim; i++)
{
pox[i] = XX[i][j];
if (myrank == 0 && (XX[i][j] < bbox[i] + lli[i] * DH[i] || XX[i][j] > bbox[dim + i] - uui[i] * DH[i]))
{
cout << "Patch::Interp_Points: point (";
for (int k = 0; k < dim; k++)
{
cout << XX[k][j];
if (k < dim - 1)
cout << ",";
else
cout << ") is out of current Patch." << endl;
}
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
MyList<Block> *Bp = blb;
bool notfind = true;
while (notfind && Bp)
{
Block *BP = Bp->data;
bool flag = true;
for (int i = 0; i < dim; i++)
{
#ifdef Vertex
#ifdef Cell
#error Both Cell and Vertex are defined
#endif
llb[i] = (feq(BP->bbox[i], bbox[i], DH[i] / 2)) ? BP->bbox[i] + lli[i] * DH[i] : BP->bbox[i] + (ghost_width - 0.5) * DH[i];
uub[i] = (feq(BP->bbox[dim + i], bbox[dim + i], DH[i] / 2)) ? BP->bbox[dim + i] - uui[i] * DH[i] : BP->bbox[dim + i] - (ghost_width - 0.5) * DH[i];
#else
#ifdef Cell
llb[i] = (feq(BP->bbox[i], bbox[i], DH[i] / 2)) ? BP->bbox[i] + lli[i] * DH[i] : BP->bbox[i] + ghost_width * DH[i];
uub[i] = (feq(BP->bbox[dim + i], bbox[dim + i], DH[i] / 2)) ? BP->bbox[dim + i] - uui[i] * DH[i] : BP->bbox[dim + i] - ghost_width * DH[i];
#else
#error Not define Vertex nor Cell
#endif
#endif
if (XX[i][j] - llb[i] < -DH[i] / 2 || XX[i][j] - uub[i] > DH[i] / 2)
{
flag = false;
break;
}
}
if (flag)
{
notfind = false;
owner_rank[j] = BP->rank;
if (myrank == BP->rank)
{
varl = VarList;
int k = 0;
while (varl)
{
f_global_interp(BP->shape, BP->X[0], BP->X[1], BP->X[2], BP->fgfs[varl->data->sgfn], Shellf[j * num_var + k],
pox[0], pox[1], pox[2], ordn, varl->data->SoA, Symmetry);
varl = varl->next;
k++;
}
}
}
if (Bp == ble)
break;
Bp = Bp->next;
}
}
// --- Error check for unfound points ---
for (int j = 0; j < NN; j++)
{
if (owner_rank[j] < 0 && myrank == 0)
{ {
cout << "ERROR: Patch::Interp_Points fails to find point ("; cout << "ERROR: Patch::Interp_Points fails to find point (";
for (int j = 0; j < dim; j++) for (int d = 0; d < dim; d++)
{ {
cout << XX[j][i]; cout << XX[d][j];
if (j < dim - 1) if (d < dim - 1)
cout << ","; cout << ",";
else else
cout << ")"; cout << ")";
} }
cout << " on Patch ("; cout << " on Patch (";
for (int j = 0; j < dim; j++) for (int d = 0; d < dim; d++)
{ {
cout << bbox[j] << "+" << lli[j] * getdX(j); cout << bbox[d] << "+" << lli[d] * DH[d];
if (j < dim - 1) if (d < dim - 1)
cout << ","; cout << ",";
else else
cout << ")--"; cout << ")--";
} }
cout << "("; cout << "(";
for (int j = 0; j < dim; j++) for (int d = 0; d < dim; d++)
{ {
cout << bbox[dim + j] << "-" << uui[j] * getdX(j); cout << bbox[dim + d] << "-" << uui[d] * DH[d];
if (j < dim - 1) if (d < dim - 1)
cout << ","; cout << ",";
else else
cout << ")" << endl; cout << ")" << endl;
} }
#if 0
checkBlock();
#else
cout << "splited domains:" << endl;
{
MyList<Block> *Bp = blb;
while (Bp)
{
Block *BP = Bp->data;
for (int i = 0; i < dim; i++)
{
#ifdef Vertex
#ifdef Cell
#error Both Cell and Vertex are defined
#endif
llb[i] = (feq(BP->bbox[i], bbox[i], DH[i] / 2)) ? BP->bbox[i] + lli[i] * DH[i] : BP->bbox[i] + (ghost_width - 0.5) * DH[i];
uub[i] = (feq(BP->bbox[dim + i], bbox[dim + i], DH[i] / 2)) ? BP->bbox[dim + i] - uui[i] * DH[i] : BP->bbox[dim + i] - (ghost_width - 0.5) * DH[i];
#else
#ifdef Cell
llb[i] = (feq(BP->bbox[i], bbox[i], DH[i] / 2)) ? BP->bbox[i] + lli[i] * DH[i] : BP->bbox[i] + ghost_width * DH[i];
uub[i] = (feq(BP->bbox[dim + i], bbox[dim + i], DH[i] / 2)) ? BP->bbox[dim + i] - uui[i] * DH[i] : BP->bbox[dim + i] - ghost_width * DH[i];
#else
#error Not define Vertex nor Cell
#endif
#endif
}
cout << "(";
for (int j = 0; j < dim; j++)
{
cout << llb[j] << ":" << uub[j];
if (j < dim - 1)
cout << ",";
else
cout << ")" << endl;
}
if (Bp == ble)
break;
Bp = Bp->next;
}
}
#endif
MPI_Abort(MPI_COMM_WORLD, 1); MPI_Abort(MPI_COMM_WORLD, 1);
} }
} }
delete[] shellf; // --- Targeted point-to-point communication phase ---
delete[] weight; // Compute consumer_rank[j] using the same deterministic formula as surface_integral
delete[] Weight; int *consumer_rank = new int[NN];
delete[] DH; {
delete[] llb; int mp = NN / nprocs;
delete[] uub; int Lp = NN - nprocs * mp;
for (int j = 0; j < NN; j++)
{
if (j < Lp * (mp + 1))
consumer_rank[j] = j / (mp + 1);
else
consumer_rank[j] = Lp + (j - Lp * (mp + 1)) / mp;
}
}
// Count sends and recvs per rank
int *send_count = new int[nprocs];
int *recv_count = new int[nprocs];
memset(send_count, 0, sizeof(int) * nprocs);
memset(recv_count, 0, sizeof(int) * nprocs);
for (int j = 0; j < NN; j++)
{
int own = owner_rank[j];
int con = consumer_rank[j];
if (own == con)
continue; // local — no communication needed
if (own == myrank)
send_count[con]++;
if (con == myrank)
recv_count[own]++;
}
// Build send buffers: for each destination rank, pack (index, data) pairs
// Each entry: 1 int (point index j) + num_var doubles
int total_send = 0, total_recv = 0;
int *send_offset = new int[nprocs];
int *recv_offset = new int[nprocs];
for (int r = 0; r < nprocs; r++)
{
send_offset[r] = total_send;
total_send += send_count[r];
recv_offset[r] = total_recv;
total_recv += recv_count[r];
}
// Pack send buffers: each message contains (j, data[0..num_var-1]) per point
int stride = 1 + num_var; // 1 double for index + num_var doubles for data
double *sendbuf = new double[total_send * stride];
double *recvbuf = new double[total_recv * stride];
// Temporary counters for packing
int *pack_pos = new int[nprocs];
memset(pack_pos, 0, sizeof(int) * nprocs);
for (int j = 0; j < NN; j++)
{
int own = owner_rank[j];
int con = consumer_rank[j];
if (own != myrank || con == myrank)
continue;
int pos = (send_offset[con] + pack_pos[con]) * stride;
sendbuf[pos] = (double)j; // point index
for (int v = 0; v < num_var; v++)
sendbuf[pos + 1 + v] = Shellf[j * num_var + v];
pack_pos[con]++;
}
// Post non-blocking recvs and sends
int n_req = 0;
for (int r = 0; r < nprocs; r++)
{
if (recv_count[r] > 0) n_req++;
if (send_count[r] > 0) n_req++;
}
MPI_Request *reqs = new MPI_Request[n_req];
int req_idx = 0;
for (int r = 0; r < nprocs; r++)
{
if (recv_count[r] > 0)
{
MPI_Irecv(recvbuf + recv_offset[r] * stride,
recv_count[r] * stride, MPI_DOUBLE,
r, 0, MPI_COMM_WORLD, &reqs[req_idx++]);
}
}
for (int r = 0; r < nprocs; r++)
{
if (send_count[r] > 0)
{
MPI_Isend(sendbuf + send_offset[r] * stride,
send_count[r] * stride, MPI_DOUBLE,
r, 0, MPI_COMM_WORLD, &reqs[req_idx++]);
}
}
if (n_req > 0)
MPI_Waitall(n_req, reqs, MPI_STATUSES_IGNORE);
// Unpack recv buffers into Shellf
for (int i = 0; i < total_recv; i++)
{
int pos = i * stride;
int j = (int)recvbuf[pos];
for (int v = 0; v < num_var; v++)
Shellf[j * num_var + v] = recvbuf[pos + 1 + v];
}
delete[] reqs;
delete[] sendbuf;
delete[] recvbuf;
delete[] pack_pos;
delete[] send_offset;
delete[] recv_offset;
delete[] send_count;
delete[] recv_count;
delete[] consumer_rank;
delete[] owner_rank;
} }
void Patch::Interp_Points(MyList<var> *VarList, void Patch::Interp_Points(MyList<var> *VarList,
int NN, double **XX, int NN, double **XX,
@@ -573,24 +784,22 @@ void Patch::Interp_Points(MyList<var> *VarList,
varl = varl->next; varl = varl->next;
} }
double *shellf; memset(Shellf, 0, sizeof(double) * NN * num_var);
shellf = new double[NN * num_var];
memset(shellf, 0, sizeof(double) * NN * num_var);
// we use weight to monitor code, later some day we can move it for optimization // owner_rank[j] stores the global rank that owns point j
int *weight; int *owner_rank;
weight = new int[NN]; owner_rank = new int[NN];
memset(weight, 0, sizeof(int) * NN); for (int j = 0; j < NN; j++)
owner_rank[j] = -1;
double *DH, *llb, *uub; // Build global-to-local rank translation for Comm_here
DH = new double[dim]; MPI_Group world_group, local_group;
MPI_Comm_group(MPI_COMM_WORLD, &world_group);
MPI_Comm_group(Comm_here, &local_group);
double DH[dim], llb[dim], uub[dim];
for (int i = 0; i < dim; i++) for (int i = 0; i < dim; i++)
{
DH[i] = getdX(i); DH[i] = getdX(i);
}
llb = new double[dim];
uub = new double[dim];
for (int j = 0; j < NN; j++) // run along points for (int j = 0; j < NN; j++) // run along points
{ {
@@ -622,12 +831,6 @@ void Patch::Interp_Points(MyList<var> *VarList,
bool flag = true; bool flag = true;
for (int i = 0; i < dim; i++) for (int i = 0; i < dim; i++)
{ {
// NOTE: our dividing structure is (exclude ghost)
// -1 0
// 1 2
// so (0,1) does not belong to any part for vertex structure
// here we put (0,0.5) to left part and (0.5,1) to right part
// BUT for cell structure the bbox is (-1.5,0.5) and (0.5,2.5), there is no missing region at all
#ifdef Vertex #ifdef Vertex
#ifdef Cell #ifdef Cell
#error Both Cell and Vertex are defined #error Both Cell and Vertex are defined
@@ -652,6 +855,7 @@ void Patch::Interp_Points(MyList<var> *VarList,
if (flag) if (flag)
{ {
notfind = false; notfind = false;
owner_rank[j] = BP->rank;
if (myrank == BP->rank) if (myrank == BP->rank)
{ {
//---> interpolation //---> interpolation
@@ -659,14 +863,11 @@ void Patch::Interp_Points(MyList<var> *VarList,
int k = 0; int k = 0;
while (varl) // run along variables while (varl) // run along variables
{ {
// shellf[j*num_var+k] = Parallel::global_interp(dim,BP->shape,BP->X,BP->fgfs[varl->data->sgfn], f_global_interp(BP->shape, BP->X[0], BP->X[1], BP->X[2], BP->fgfs[varl->data->sgfn], Shellf[j * num_var + k],
// pox,ordn,varl->data->SoA,Symmetry);
f_global_interp(BP->shape, BP->X[0], BP->X[1], BP->X[2], BP->fgfs[varl->data->sgfn], shellf[j * num_var + k],
pox[0], pox[1], pox[2], ordn, varl->data->SoA, Symmetry); pox[0], pox[1], pox[2], ordn, varl->data->SoA, Symmetry);
varl = varl->next; varl = varl->next;
k++; k++;
} }
weight[j] = 1;
} }
} }
if (Bp == ble) if (Bp == ble)
@@ -675,97 +876,35 @@ void Patch::Interp_Points(MyList<var> *VarList,
} }
} }
MPI_Allreduce(shellf, Shellf, NN * num_var, MPI_DOUBLE, MPI_SUM, Comm_here); // Collect unique global owner ranks and translate to local ranks in Comm_here
int *Weight; // Then broadcast each owner's points via MPI_Bcast on Comm_here
Weight = new int[NN];
MPI_Allreduce(weight, Weight, NN, MPI_INT, MPI_SUM, Comm_here);
// misc::tillherecheck("print me");
// if(lmyrank == 0) cout<<"myrank = "<<myrank<<"print me"<<endl;
for (int i = 0; i < NN; i++)
{ {
if (Weight[i] > 1) int j = 0;
while (j < NN)
{ {
if (lmyrank == 0) int cur_owner_global = owner_rank[j];
cout << "WARNING: Patch::Interp_Points meets multiple weight" << endl; if (cur_owner_global < 0)
for (int j = 0; j < num_var; j++) {
Shellf[j + i * num_var] = Shellf[j + i * num_var] / Weight[i]; // Point not found — skip (error check disabled for sub-communicator levels)
j++;
continue;
}
// Translate global rank to local rank in Comm_here
int cur_owner_local;
MPI_Group_translate_ranks(world_group, 1, &cur_owner_global, local_group, &cur_owner_local);
// Find contiguous run of points with the same owner
int jstart = j;
while (j < NN && owner_rank[j] == cur_owner_global)
j++;
int count = (j - jstart) * num_var;
MPI_Bcast(Shellf + jstart * num_var, count, MPI_DOUBLE, cur_owner_local, Comm_here);
} }
#if 0 // for not involved levels, this may fail
else if(Weight[i] == 0 && lmyrank == 0)
{
cout<<"ERROR: Patch::Interp_Points fails to find point (";
for(int j=0;j<dim;j++)
{
cout<<XX[j][i];
if(j<dim-1) cout<<",";
else cout<<")";
}
cout<<" on Patch (";
for(int j=0;j<dim;j++)
{
cout<<bbox[j]<<"+"<<lli[j]*getdX(j);
if(j<dim-1) cout<<",";
else cout<<")--";
}
cout<<"(";
for(int j=0;j<dim;j++)
{
cout<<bbox[dim+j]<<"-"<<uui[j]*getdX(j);
if(j<dim-1) cout<<",";
else cout<<")"<<endl;
}
#if 0
checkBlock();
#else
cout<<"splited domains:"<<endl;
{
MyList<Block> *Bp=blb;
while(Bp)
{
Block *BP=Bp->data;
for(int i=0;i<dim;i++)
{
#ifdef Vertex
#ifdef Cell
#error Both Cell and Vertex are defined
#endif
llb[i] = (feq(BP->bbox[i] ,bbox[i] ,DH[i]/2)) ? BP->bbox[i]+lli[i]*DH[i] : BP->bbox[i] +(ghost_width-0.5)*DH[i];
uub[i] = (feq(BP->bbox[dim+i],bbox[dim+i],DH[i]/2)) ? BP->bbox[dim+i]-uui[i]*DH[i] : BP->bbox[dim+i]-(ghost_width-0.5)*DH[i];
#else
#ifdef Cell
llb[i] = (feq(BP->bbox[i] ,bbox[i] ,DH[i]/2)) ? BP->bbox[i]+lli[i]*DH[i] : BP->bbox[i] +ghost_width*DH[i];
uub[i] = (feq(BP->bbox[dim+i],bbox[dim+i],DH[i]/2)) ? BP->bbox[dim+i]-uui[i]*DH[i] : BP->bbox[dim+i]-ghost_width*DH[i];
#else
#error Not define Vertex nor Cell
#endif
#endif
}
cout<<"(";
for(int j=0;j<dim;j++)
{
cout<<llb[j]<<":"<<uub[j];
if(j<dim-1) cout<<",";
else cout<<")"<<endl;
}
if(Bp == ble) break;
Bp=Bp->next;
}
}
#endif
MPI_Abort(MPI_COMM_WORLD,1);
}
#endif
} }
delete[] shellf; MPI_Group_free(&world_group);
delete[] weight; MPI_Group_free(&local_group);
delete[] Weight; delete[] owner_rank;
delete[] DH;
delete[] llb;
delete[] uub;
} }
void Patch::checkBlock() void Patch::checkBlock()
{ {

View File

@@ -39,6 +39,10 @@ public:
bool Find_Point(double *XX); bool Find_Point(double *XX);
void Interp_Points(MyList<var> *VarList,
int NN, double **XX,
double *Shellf, int Symmetry,
int Nmin_consumer, int Nmax_consumer);
void Interp_Points(MyList<var> *VarList, void Interp_Points(MyList<var> *VarList,
int NN, double **XX, int NN, double **XX,
double *Shellf, int Symmetry, MPI_Comm Comm_here); double *Shellf, int Symmetry, MPI_Comm Comm_here);

View File

@@ -4,8 +4,6 @@
#include "prolongrestrict.h" #include "prolongrestrict.h"
#include "misc.h" #include "misc.h"
#include "parameters.h" #include "parameters.h"
#include <vector>
#include <algorithm>
int Parallel::partition1(int &nx, int split_size, int min_width, int cpusize, int shape) // special for 1 diemnsion int Parallel::partition1(int &nx, int split_size, int min_width, int cpusize, int shape) // special for 1 diemnsion
{ {
@@ -74,14 +72,14 @@ int Parallel::partition3(int *nxyz, int split_size, int *min_width, int cpusize,
int n; int n;
block_size = shape[0] * shape[1] * shape[2]; block_size = shape[0] * shape[1] * shape[2];
n = Mymax(1, (block_size + split_size / 2) / split_size); n = Mymax(1, (block_size + split_size / 2) / split_size);
maxnx = Mymax(1, shape[0] / min_width[0]); maxnx = Mymax(1, shape[0] / min_width[0]);
maxnx = Mymin(cpusize, maxnx); maxnx = Mymin(cpusize, maxnx);
maxny = Mymax(1, shape[1] / min_width[1]); maxny = Mymax(1, shape[1] / min_width[1]);
maxny = Mymin(cpusize, maxny); maxny = Mymin(cpusize, maxny);
maxnz = Mymax(1, shape[2] / min_width[2]); maxnz = Mymax(1, shape[2] / min_width[2]);
maxnz = Mymin(cpusize, maxnz); maxnz = Mymin(cpusize, maxnz);
fx = (double)shape[0] / (shape[0] + shape[1] + shape[2]); fx = (double)shape[0] / (shape[0] + shape[1] + shape[2]);
fy = (double)shape[1] / (shape[0] + shape[1] + shape[2]); fy = (double)shape[1] / (shape[0] + shape[1] + shape[2]);
fz = (double)shape[2] / (shape[0] + shape[1] + shape[2]); fz = (double)shape[2] / (shape[0] + shape[1] + shape[2]);
@@ -354,73 +352,14 @@ MyList<Block> *Parallel::distribute(MyList<Patch> *PatchLIST, int cpusize, int i
split_size = Mymax(min_size, block_size / nodes); split_size = Mymax(min_size, block_size / nodes);
split_size = Mymax(1, split_size); split_size = Mymax(1, split_size);
// Pass 1: compute block volumes for greedy rank assignment int n_rank = 0;
std::vector<long> block_volumes;
PLi = PatchLIST; PLi = PatchLIST;
int reacpu = 0; int reacpu = 0;
while (PLi) while (PLi)
{ {
Patch *PP = PLi->data; Patch *PP = PLi->data;
reacpu += partition3(nxyz, split_size, mmin_width, nodes, PP->shape); reacpu += partition3(nxyz, split_size, mmin_width, nodes, PP->shape);
int ibbox_here[2 * dim];
for (int i = 0; i < nxyz[0]; i++)
for (int j = 0; j < nxyz[1]; j++)
for (int k = 0; k < nxyz[2]; k++)
{
ibbox_here[0] = (PP->shape[0] * i) / nxyz[0];
ibbox_here[3] = (PP->shape[0] * (i + 1)) / nxyz[0] - 1;
ibbox_here[1] = (PP->shape[1] * j) / nxyz[1];
ibbox_here[4] = (PP->shape[1] * (j + 1)) / nxyz[1] - 1;
ibbox_here[2] = (PP->shape[2] * k) / nxyz[2];
ibbox_here[5] = (PP->shape[2] * (k + 1)) / nxyz[2] - 1;
if (periodic)
{
for (int d = 0; d < dim; d++) { ibbox_here[d] -= ghost_width; ibbox_here[dim + d] += ghost_width; }
}
else
{
ibbox_here[0] = Mymax(0, ibbox_here[0] - ghost_width);
ibbox_here[3] = Mymin(PP->shape[0] - 1, ibbox_here[3] + ghost_width);
ibbox_here[1] = Mymax(0, ibbox_here[1] - ghost_width);
ibbox_here[4] = Mymin(PP->shape[1] - 1, ibbox_here[4] + ghost_width);
ibbox_here[2] = Mymax(0, ibbox_here[2] - ghost_width);
ibbox_here[5] = Mymin(PP->shape[2] - 1, ibbox_here[5] + ghost_width);
}
long vol = 1;
for (int d = 0; d < dim; d++)
vol *= (ibbox_here[dim + d] - ibbox_here[d] + 1);
block_volumes.push_back(vol);
}
PLi = PLi->next;
}
// Greedy LPT: sort by volume descending, assign each to least-loaded rank
std::vector<int> assigned_ranks(block_volumes.size());
{
std::vector<int> order(block_volumes.size());
for (int i = 0; i < (int)order.size(); i++) order[i] = i;
std::sort(order.begin(), order.end(), [&](int a, int b) {
return block_volumes[a] > block_volumes[b];
});
std::vector<long> load(cpusize, 0);
for (int idx : order)
{
int min_r = 0;
for (int r = 1; r < cpusize; r++)
if (load[r] < load[min_r]) min_r = r;
assigned_ranks[idx] = min_r;
load[min_r] += block_volumes[idx];
}
}
// Pass 2: create blocks with pre-assigned ranks
int block_idx = 0;
PLi = PatchLIST;
while (PLi)
{
Patch *PP = PLi->data;
partition3(nxyz, split_size, mmin_width, nodes, PP->shape);
Block *ng0, *ng; Block *ng0, *ng;
int shape_here[dim], ibbox_here[2 * dim]; int shape_here[dim], ibbox_here[2 * dim];
@@ -504,7 +443,10 @@ MyList<Block> *Parallel::distribute(MyList<Patch> *PatchLIST, int cpusize, int i
int shape_res[dim * pices]; int shape_res[dim * pices];
double bbox_res[2 * dim * pices]; double bbox_res[2 * dim * pices];
misc::dividBlock(dim, shape_here, bbox_here, pices, picef, shape_res, bbox_res, min_width); misc::dividBlock(dim, shape_here, bbox_here, pices, picef, shape_res, bbox_res, min_width);
ng = ng0 = new Block(dim, shape_res, bbox_res, assigned_ranks[block_idx++], ingfsi, fngfsi, PP->lev, 0); // delete through KillBlocks ng = ng0 = new Block(dim, shape_res, bbox_res, n_rank++, ingfsi, fngfsi, PP->lev, 0); // delete through KillBlocks
// if(n_rank==cpusize) {n_rank=0; cerr<<"place one!!"<<endl;}
// ng->checkBlock(); // ng->checkBlock();
if (BlL) if (BlL)
BlL->insert(ng); BlL->insert(ng);
@@ -513,19 +455,22 @@ MyList<Block> *Parallel::distribute(MyList<Patch> *PatchLIST, int cpusize, int i
for (int i = 1; i < pices; i++) for (int i = 1; i < pices; i++)
{ {
ng = new Block(dim, shape_res + i * dim, bbox_res + i * 2 * dim, assigned_ranks[block_idx++], ingfsi, fngfsi, PP->lev, i); // delete through KillBlocks ng = new Block(dim, shape_res + i * dim, bbox_res + i * 2 * dim, n_rank++, ingfsi, fngfsi, PP->lev, i); // delete through KillBlocks
// if(n_rank==cpusize) {n_rank=0; cerr<<"place two!! "<<i<<endl;}
// ng->checkBlock(); // ng->checkBlock();
BlL->insert(ng); BlL->insert(ng);
} }
} }
#else #else
ng = ng0 = new Block(dim, shape_here, bbox_here, assigned_ranks[block_idx++], ingfsi, fngfsi, PP->lev); // delete through KillBlocks ng = ng0 = new Block(dim, shape_here, bbox_here, n_rank++, ingfsi, fngfsi, PP->lev); // delete through KillBlocks
// ng->checkBlock(); // ng->checkBlock();
if (BlL) if (BlL)
BlL->insert(ng); BlL->insert(ng);
else else
BlL = new MyList<Block>(ng); // delete through KillBlocks BlL = new MyList<Block>(ng); // delete through KillBlocks
#endif #endif
if (n_rank == cpusize)
n_rank = 0;
// set PP->blb // set PP->blb
if (i == 0 && j == 0 && k == 0) if (i == 0 && j == 0 && k == 0)
@@ -3559,7 +3504,7 @@ int Parallel::data_packermix(double *data, MyList<Parallel::gridseg> *src, MyLis
return size_out; return size_out;
} }
//
void Parallel::transfer(MyList<Parallel::gridseg> **src, MyList<Parallel::gridseg> **dst, void Parallel::transfer(MyList<Parallel::gridseg> **src, MyList<Parallel::gridseg> **dst,
MyList<var> *VarList1 /* source */, MyList<var> *VarList2 /*target */, MyList<var> *VarList1 /* source */, MyList<var> *VarList2 /*target */,
int Symmetry) int Symmetry)
@@ -3567,20 +3512,13 @@ void Parallel::transfer(MyList<Parallel::gridseg> **src, MyList<Parallel::gridse
int myrank, cpusize; int myrank, cpusize;
MPI_Comm_size(MPI_COMM_WORLD, &cpusize); MPI_Comm_size(MPI_COMM_WORLD, &cpusize);
MPI_Comm_rank(MPI_COMM_WORLD, &myrank); MPI_Comm_rank(MPI_COMM_WORLD, &myrank);
/*
// Early exit: if no gridseg pairs exist for any node, skip all work
{
bool has_segs = false;
for (int n = 0; n < cpusize; n++) {
if (src[n] && dst[n]) { has_segs = true; break; }
}
if (!has_segs) return;
}
*/
int node; int node;
MPI_Request *reqs = new MPI_Request[2 * cpusize]; MPI_Request *reqs;
MPI_Status *stats = new MPI_Status[2 * cpusize]; MPI_Status *stats;
reqs = new MPI_Request[2 * cpusize];
stats = new MPI_Status[2 * cpusize];
int req_no = 0; int req_no = 0;
double **send_data, **rec_data; double **send_data, **rec_data;
@@ -3588,42 +3526,50 @@ void Parallel::transfer(MyList<Parallel::gridseg> **src, MyList<Parallel::gridse
rec_data = new double *[cpusize]; rec_data = new double *[cpusize];
int length; int length;
for (node = 0; node < cpusize; node++)
send_data[node] = rec_data[node] = 0;
// 第1步: 本地拷贝 + 所有 Irecv
for (node = 0; node < cpusize; node++) for (node = 0; node < cpusize; node++)
{ {
send_data[node] = rec_data[node] = 0;
if (node == myrank) if (node == myrank)
{ {
if (length = data_packer(0, src[myrank], dst[myrank], node, PACK, VarList1, VarList2, Symmetry)) if (length = data_packer(0, src[myrank], dst[myrank], node, PACK, VarList1, VarList2, Symmetry))
{ {
rec_data[node] = new double[length]; rec_data[node] = new double[length];
if (!rec_data[node])
{
cout << "out of memory when new in short transfer, place 1" << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
data_packer(rec_data[node], src[myrank], dst[myrank], node, PACK, VarList1, VarList2, Symmetry); data_packer(rec_data[node], src[myrank], dst[myrank], node, PACK, VarList1, VarList2, Symmetry);
} }
} }
else else
{ {
// send from this cpu to cpu#node
if (length = data_packer(0, src[myrank], dst[myrank], node, PACK, VarList1, VarList2, Symmetry))
{
send_data[node] = new double[length];
if (!send_data[node])
{
cout << "out of memory when new in short transfer, place 2" << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
data_packer(send_data[node], src[myrank], dst[myrank], node, PACK, VarList1, VarList2, Symmetry);
MPI_Isend((void *)send_data[node], length, MPI_DOUBLE, node, 1, MPI_COMM_WORLD, reqs + req_no++);
}
// receive from cpu#node to this cpu
if (length = data_packer(0, src[node], dst[node], node, UNPACK, VarList1, VarList2, Symmetry)) if (length = data_packer(0, src[node], dst[node], node, UNPACK, VarList1, VarList2, Symmetry))
{ {
rec_data[node] = new double[length]; rec_data[node] = new double[length];
if (!rec_data[node])
{
cout << "out of memory when new in short transfer, place 3" << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
MPI_Irecv((void *)rec_data[node], length, MPI_DOUBLE, node, 1, MPI_COMM_WORLD, reqs + req_no++); MPI_Irecv((void *)rec_data[node], length, MPI_DOUBLE, node, 1, MPI_COMM_WORLD, reqs + req_no++);
} }
} }
} }
// wait for all requests to complete
// 第2步: pack + Isend
for (node = 0; node < cpusize; node++)
{
if (node == myrank) continue;
if (length = data_packer(0, src[myrank], dst[myrank], node, PACK, VarList1, VarList2, Symmetry))
{
send_data[node] = new double[length];
data_packer(send_data[node], src[myrank], dst[myrank], node, PACK, VarList1, VarList2, Symmetry);
MPI_Isend((void *)send_data[node], length, MPI_DOUBLE, node, 1, MPI_COMM_WORLD, reqs + req_no++);
}
}
MPI_Waitall(req_no, reqs, stats); MPI_Waitall(req_no, reqs, stats);
for (node = 0; node < cpusize; node++) for (node = 0; node < cpusize; node++)
@@ -3810,6 +3756,502 @@ void Parallel::Sync(MyList<Patch> *PatL, MyList<var> *VarList, int Symmetry)
delete[] transfer_src; delete[] transfer_src;
delete[] transfer_dst; delete[] transfer_dst;
} }
// Merged Sync: collect all intra-patch and inter-patch grid segment lists,
// then issue a single transfer() call instead of N+1 separate ones.
void Parallel::Sync_merged(MyList<Patch> *PatL, MyList<var> *VarList, int Symmetry)
{
int cpusize;
MPI_Comm_size(MPI_COMM_WORLD, &cpusize);
MyList<Parallel::gridseg> **combined_src = new MyList<Parallel::gridseg> *[cpusize];
MyList<Parallel::gridseg> **combined_dst = new MyList<Parallel::gridseg> *[cpusize];
for (int node = 0; node < cpusize; node++)
combined_src[node] = combined_dst[node] = 0;
// Phase A: Intra-patch ghost exchange segments
MyList<Patch> *Pp = PatL;
while (Pp)
{
Patch *Pat = Pp->data;
MyList<Parallel::gridseg> *dst_ghost = build_ghost_gsl(Pat);
for (int node = 0; node < cpusize; node++)
{
MyList<Parallel::gridseg> *src_owned = build_owned_gsl0(Pat, node);
MyList<Parallel::gridseg> *tsrc = 0, *tdst = 0;
build_gstl(src_owned, dst_ghost, &tsrc, &tdst);
if (tsrc)
{
if (combined_src[node])
combined_src[node]->catList(tsrc);
else
combined_src[node] = tsrc;
}
if (tdst)
{
if (combined_dst[node])
combined_dst[node]->catList(tdst);
else
combined_dst[node] = tdst;
}
if (src_owned)
src_owned->destroyList();
}
if (dst_ghost)
dst_ghost->destroyList();
Pp = Pp->next;
}
// Phase B: Inter-patch buffer exchange segments
MyList<Parallel::gridseg> *dst_buffer = build_buffer_gsl(PatL);
for (int node = 0; node < cpusize; node++)
{
MyList<Parallel::gridseg> *src_owned = build_owned_gsl(PatL, node, 5, Symmetry);
MyList<Parallel::gridseg> *tsrc = 0, *tdst = 0;
build_gstl(src_owned, dst_buffer, &tsrc, &tdst);
if (tsrc)
{
if (combined_src[node])
combined_src[node]->catList(tsrc);
else
combined_src[node] = tsrc;
}
if (tdst)
{
if (combined_dst[node])
combined_dst[node]->catList(tdst);
else
combined_dst[node] = tdst;
}
if (src_owned)
src_owned->destroyList();
}
if (dst_buffer)
dst_buffer->destroyList();
// Phase C: Single transfer
transfer(combined_src, combined_dst, VarList, VarList, Symmetry);
// Phase D: Cleanup
for (int node = 0; node < cpusize; node++)
{
if (combined_src[node])
combined_src[node]->destroyList();
if (combined_dst[node])
combined_dst[node]->destroyList();
}
delete[] combined_src;
delete[] combined_dst;
}
// SyncCache constructor
Parallel::SyncCache::SyncCache()
: valid(false), cpusize(0), combined_src(0), combined_dst(0),
send_lengths(0), recv_lengths(0), send_bufs(0), recv_bufs(0),
send_buf_caps(0), recv_buf_caps(0), reqs(0), stats(0), max_reqs(0),
lengths_valid(false)
{
}
// SyncCache invalidate: free grid segment lists but keep buffers
void Parallel::SyncCache::invalidate()
{
if (!valid)
return;
for (int i = 0; i < cpusize; i++)
{
if (combined_src[i])
combined_src[i]->destroyList();
if (combined_dst[i])
combined_dst[i]->destroyList();
combined_src[i] = combined_dst[i] = 0;
send_lengths[i] = recv_lengths[i] = 0;
}
valid = false;
lengths_valid = false;
}
// SyncCache destroy: free everything
void Parallel::SyncCache::destroy()
{
invalidate();
if (combined_src) delete[] combined_src;
if (combined_dst) delete[] combined_dst;
if (send_lengths) delete[] send_lengths;
if (recv_lengths) delete[] recv_lengths;
if (send_buf_caps) delete[] send_buf_caps;
if (recv_buf_caps) delete[] recv_buf_caps;
for (int i = 0; i < cpusize; i++)
{
if (send_bufs && send_bufs[i]) delete[] send_bufs[i];
if (recv_bufs && recv_bufs[i]) delete[] recv_bufs[i];
}
if (send_bufs) delete[] send_bufs;
if (recv_bufs) delete[] recv_bufs;
if (reqs) delete[] reqs;
if (stats) delete[] stats;
combined_src = combined_dst = 0;
send_lengths = recv_lengths = 0;
send_buf_caps = recv_buf_caps = 0;
send_bufs = recv_bufs = 0;
reqs = 0; stats = 0;
cpusize = 0; max_reqs = 0;
}
// transfer_cached: reuse pre-allocated buffers from SyncCache
void Parallel::transfer_cached(MyList<Parallel::gridseg> **src, MyList<Parallel::gridseg> **dst,
MyList<var> *VarList1, MyList<var> *VarList2,
int Symmetry, SyncCache &cache)
{
int myrank;
MPI_Comm_size(MPI_COMM_WORLD, &cache.cpusize);
MPI_Comm_rank(MPI_COMM_WORLD, &myrank);
int cpusize = cache.cpusize;
int req_no = 0;
int node;
for (node = 0; node < cpusize; node++)
{
if (node == myrank)
{
int length = data_packer(0, src[myrank], dst[myrank], node, PACK, VarList1, VarList2, Symmetry);
cache.recv_lengths[node] = length;
if (length > 0)
{
if (length > cache.recv_buf_caps[node])
{
if (cache.recv_bufs[node]) delete[] cache.recv_bufs[node];
cache.recv_bufs[node] = new double[length];
cache.recv_buf_caps[node] = length;
}
data_packer(cache.recv_bufs[node], src[myrank], dst[myrank], node, PACK, VarList1, VarList2, Symmetry);
}
}
else
{
// send
int slength = data_packer(0, src[myrank], dst[myrank], node, PACK, VarList1, VarList2, Symmetry);
cache.send_lengths[node] = slength;
if (slength > 0)
{
if (slength > cache.send_buf_caps[node])
{
if (cache.send_bufs[node]) delete[] cache.send_bufs[node];
cache.send_bufs[node] = new double[slength];
cache.send_buf_caps[node] = slength;
}
data_packer(cache.send_bufs[node], src[myrank], dst[myrank], node, PACK, VarList1, VarList2, Symmetry);
MPI_Isend((void *)cache.send_bufs[node], slength, MPI_DOUBLE, node, 1, MPI_COMM_WORLD, cache.reqs + req_no++);
}
// recv
int rlength = data_packer(0, src[node], dst[node], node, UNPACK, VarList1, VarList2, Symmetry);
cache.recv_lengths[node] = rlength;
if (rlength > 0)
{
if (rlength > cache.recv_buf_caps[node])
{
if (cache.recv_bufs[node]) delete[] cache.recv_bufs[node];
cache.recv_bufs[node] = new double[rlength];
cache.recv_buf_caps[node] = rlength;
}
MPI_Irecv((void *)cache.recv_bufs[node], rlength, MPI_DOUBLE, node, 1, MPI_COMM_WORLD, cache.reqs + req_no++);
}
}
}
MPI_Waitall(req_no, cache.reqs, cache.stats);
for (node = 0; node < cpusize; node++)
if (cache.recv_bufs[node] && cache.recv_lengths[node] > 0)
data_packer(cache.recv_bufs[node], src[node], dst[node], node, UNPACK, VarList1, VarList2, Symmetry);
}
// Sync_cached: build grid segment lists on first call, reuse on subsequent calls
void Parallel::Sync_cached(MyList<Patch> *PatL, MyList<var> *VarList, int Symmetry, SyncCache &cache)
{
if (!cache.valid)
{
int cpusize;
MPI_Comm_size(MPI_COMM_WORLD, &cpusize);
cache.cpusize = cpusize;
// Allocate cache arrays if needed
if (!cache.combined_src)
{
cache.combined_src = new MyList<Parallel::gridseg> *[cpusize];
cache.combined_dst = new MyList<Parallel::gridseg> *[cpusize];
cache.send_lengths = new int[cpusize];
cache.recv_lengths = new int[cpusize];
cache.send_bufs = new double *[cpusize];
cache.recv_bufs = new double *[cpusize];
cache.send_buf_caps = new int[cpusize];
cache.recv_buf_caps = new int[cpusize];
for (int i = 0; i < cpusize; i++)
{
cache.send_bufs[i] = cache.recv_bufs[i] = 0;
cache.send_buf_caps[i] = cache.recv_buf_caps[i] = 0;
}
cache.max_reqs = 2 * cpusize;
cache.reqs = new MPI_Request[cache.max_reqs];
cache.stats = new MPI_Status[cache.max_reqs];
}
for (int node = 0; node < cpusize; node++)
{
cache.combined_src[node] = cache.combined_dst[node] = 0;
cache.send_lengths[node] = cache.recv_lengths[node] = 0;
}
// Build intra-patch segments (same as Sync_merged Phase A)
MyList<Patch> *Pp = PatL;
while (Pp)
{
Patch *Pat = Pp->data;
MyList<Parallel::gridseg> *dst_ghost = build_ghost_gsl(Pat);
for (int node = 0; node < cpusize; node++)
{
MyList<Parallel::gridseg> *src_owned = build_owned_gsl0(Pat, node);
MyList<Parallel::gridseg> *tsrc = 0, *tdst = 0;
build_gstl(src_owned, dst_ghost, &tsrc, &tdst);
if (tsrc)
{
if (cache.combined_src[node])
cache.combined_src[node]->catList(tsrc);
else
cache.combined_src[node] = tsrc;
}
if (tdst)
{
if (cache.combined_dst[node])
cache.combined_dst[node]->catList(tdst);
else
cache.combined_dst[node] = tdst;
}
if (src_owned) src_owned->destroyList();
}
if (dst_ghost) dst_ghost->destroyList();
Pp = Pp->next;
}
// Build inter-patch segments (same as Sync_merged Phase B)
MyList<Parallel::gridseg> *dst_buffer = build_buffer_gsl(PatL);
for (int node = 0; node < cpusize; node++)
{
MyList<Parallel::gridseg> *src_owned = build_owned_gsl(PatL, node, 5, Symmetry);
MyList<Parallel::gridseg> *tsrc = 0, *tdst = 0;
build_gstl(src_owned, dst_buffer, &tsrc, &tdst);
if (tsrc)
{
if (cache.combined_src[node])
cache.combined_src[node]->catList(tsrc);
else
cache.combined_src[node] = tsrc;
}
if (tdst)
{
if (cache.combined_dst[node])
cache.combined_dst[node]->catList(tdst);
else
cache.combined_dst[node] = tdst;
}
if (src_owned) src_owned->destroyList();
}
if (dst_buffer) dst_buffer->destroyList();
cache.valid = true;
}
// Use cached lists with buffer-reusing transfer
transfer_cached(cache.combined_src, cache.combined_dst, VarList, VarList, Symmetry, cache);
}
// Sync_start: pack and post MPI_Isend/Irecv, return immediately
void Parallel::Sync_start(MyList<Patch> *PatL, MyList<var> *VarList, int Symmetry,
SyncCache &cache, AsyncSyncState &state)
{
// Ensure cache is built
if (!cache.valid)
{
// Build cache (same logic as Sync_cached)
int cpusize;
MPI_Comm_size(MPI_COMM_WORLD, &cpusize);
cache.cpusize = cpusize;
if (!cache.combined_src)
{
cache.combined_src = new MyList<Parallel::gridseg> *[cpusize];
cache.combined_dst = new MyList<Parallel::gridseg> *[cpusize];
cache.send_lengths = new int[cpusize];
cache.recv_lengths = new int[cpusize];
cache.send_bufs = new double *[cpusize];
cache.recv_bufs = new double *[cpusize];
cache.send_buf_caps = new int[cpusize];
cache.recv_buf_caps = new int[cpusize];
for (int i = 0; i < cpusize; i++)
{
cache.send_bufs[i] = cache.recv_bufs[i] = 0;
cache.send_buf_caps[i] = cache.recv_buf_caps[i] = 0;
}
cache.max_reqs = 2 * cpusize;
cache.reqs = new MPI_Request[cache.max_reqs];
cache.stats = new MPI_Status[cache.max_reqs];
}
for (int node = 0; node < cpusize; node++)
{
cache.combined_src[node] = cache.combined_dst[node] = 0;
cache.send_lengths[node] = cache.recv_lengths[node] = 0;
}
MyList<Patch> *Pp = PatL;
while (Pp)
{
Patch *Pat = Pp->data;
MyList<Parallel::gridseg> *dst_ghost = build_ghost_gsl(Pat);
for (int node = 0; node < cpusize; node++)
{
MyList<Parallel::gridseg> *src_owned = build_owned_gsl0(Pat, node);
MyList<Parallel::gridseg> *tsrc = 0, *tdst = 0;
build_gstl(src_owned, dst_ghost, &tsrc, &tdst);
if (tsrc)
{
if (cache.combined_src[node])
cache.combined_src[node]->catList(tsrc);
else
cache.combined_src[node] = tsrc;
}
if (tdst)
{
if (cache.combined_dst[node])
cache.combined_dst[node]->catList(tdst);
else
cache.combined_dst[node] = tdst;
}
if (src_owned) src_owned->destroyList();
}
if (dst_ghost) dst_ghost->destroyList();
Pp = Pp->next;
}
MyList<Parallel::gridseg> *dst_buffer = build_buffer_gsl(PatL);
for (int node = 0; node < cpusize; node++)
{
MyList<Parallel::gridseg> *src_owned = build_owned_gsl(PatL, node, 5, Symmetry);
MyList<Parallel::gridseg> *tsrc = 0, *tdst = 0;
build_gstl(src_owned, dst_buffer, &tsrc, &tdst);
if (tsrc)
{
if (cache.combined_src[node])
cache.combined_src[node]->catList(tsrc);
else
cache.combined_src[node] = tsrc;
}
if (tdst)
{
if (cache.combined_dst[node])
cache.combined_dst[node]->catList(tdst);
else
cache.combined_dst[node] = tdst;
}
if (src_owned) src_owned->destroyList();
}
if (dst_buffer) dst_buffer->destroyList();
cache.valid = true;
}
// Now pack and post async MPI operations
int myrank;
MPI_Comm_rank(MPI_COMM_WORLD, &myrank);
int cpusize = cache.cpusize;
state.req_no = 0;
state.active = true;
MyList<Parallel::gridseg> **src = cache.combined_src;
MyList<Parallel::gridseg> **dst = cache.combined_dst;
for (int node = 0; node < cpusize; node++)
{
if (node == myrank)
{
int length;
if (!cache.lengths_valid) {
length = data_packer(0, src[myrank], dst[myrank], node, PACK, VarList, VarList, Symmetry);
cache.recv_lengths[node] = length;
} else {
length = cache.recv_lengths[node];
}
if (length > 0)
{
if (length > cache.recv_buf_caps[node])
{
if (cache.recv_bufs[node]) delete[] cache.recv_bufs[node];
cache.recv_bufs[node] = new double[length];
cache.recv_buf_caps[node] = length;
}
data_packer(cache.recv_bufs[node], src[myrank], dst[myrank], node, PACK, VarList, VarList, Symmetry);
}
}
else
{
int slength;
if (!cache.lengths_valid) {
slength = data_packer(0, src[myrank], dst[myrank], node, PACK, VarList, VarList, Symmetry);
cache.send_lengths[node] = slength;
} else {
slength = cache.send_lengths[node];
}
if (slength > 0)
{
if (slength > cache.send_buf_caps[node])
{
if (cache.send_bufs[node]) delete[] cache.send_bufs[node];
cache.send_bufs[node] = new double[slength];
cache.send_buf_caps[node] = slength;
}
data_packer(cache.send_bufs[node], src[myrank], dst[myrank], node, PACK, VarList, VarList, Symmetry);
MPI_Isend((void *)cache.send_bufs[node], slength, MPI_DOUBLE, node, 2, MPI_COMM_WORLD, cache.reqs + state.req_no++);
}
int rlength;
if (!cache.lengths_valid) {
rlength = data_packer(0, src[node], dst[node], node, UNPACK, VarList, VarList, Symmetry);
cache.recv_lengths[node] = rlength;
} else {
rlength = cache.recv_lengths[node];
}
if (rlength > 0)
{
if (rlength > cache.recv_buf_caps[node])
{
if (cache.recv_bufs[node]) delete[] cache.recv_bufs[node];
cache.recv_bufs[node] = new double[rlength];
cache.recv_buf_caps[node] = rlength;
}
MPI_Irecv((void *)cache.recv_bufs[node], rlength, MPI_DOUBLE, node, 2, MPI_COMM_WORLD, cache.reqs + state.req_no++);
}
}
}
cache.lengths_valid = true;
}
// Sync_finish: wait for async MPI operations and unpack
void Parallel::Sync_finish(SyncCache &cache, AsyncSyncState &state,
MyList<var> *VarList, int Symmetry)
{
if (!state.active)
return;
MPI_Waitall(state.req_no, cache.reqs, cache.stats);
int cpusize = cache.cpusize;
MyList<Parallel::gridseg> **src = cache.combined_src;
MyList<Parallel::gridseg> **dst = cache.combined_dst;
for (int node = 0; node < cpusize; node++)
if (cache.recv_bufs[node] && cache.recv_lengths[node] > 0)
data_packer(cache.recv_bufs[node], src[node], dst[node], node, UNPACK, VarList, VarList, Symmetry);
state.active = false;
}
// collect buffer grid segments or blocks for the periodic boundary condition of given patch // collect buffer grid segments or blocks for the periodic boundary condition of given patch
// --------------------------------------------------- // ---------------------------------------------------
// |con | |con | // |con | |con |
@@ -4844,6 +5286,203 @@ void Parallel::OutBdLow2Himix(MyList<Patch> *PatcL, MyList<Patch> *PatfL,
delete[] transfer_src; delete[] transfer_src;
delete[] transfer_dst; delete[] transfer_dst;
} }
// Restrict_cached: cache grid segment lists, reuse buffers via transfer_cached
void Parallel::Restrict_cached(MyList<Patch> *PatcL, MyList<Patch> *PatfL,
MyList<var> *VarList1, MyList<var> *VarList2,
int Symmetry, SyncCache &cache)
{
if (!cache.valid)
{
int cpusize;
MPI_Comm_size(MPI_COMM_WORLD, &cpusize);
cache.cpusize = cpusize;
if (!cache.combined_src)
{
cache.combined_src = new MyList<Parallel::gridseg> *[cpusize];
cache.combined_dst = new MyList<Parallel::gridseg> *[cpusize];
cache.send_lengths = new int[cpusize];
cache.recv_lengths = new int[cpusize];
cache.send_bufs = new double *[cpusize];
cache.recv_bufs = new double *[cpusize];
cache.send_buf_caps = new int[cpusize];
cache.recv_buf_caps = new int[cpusize];
for (int i = 0; i < cpusize; i++)
{
cache.send_bufs[i] = cache.recv_bufs[i] = 0;
cache.send_buf_caps[i] = cache.recv_buf_caps[i] = 0;
}
cache.max_reqs = 2 * cpusize;
cache.reqs = new MPI_Request[cache.max_reqs];
cache.stats = new MPI_Status[cache.max_reqs];
}
MyList<Parallel::gridseg> *dst = build_complete_gsl(PatcL);
for (int node = 0; node < cpusize; node++)
{
MyList<Parallel::gridseg> *src_owned = build_owned_gsl(PatfL, node, 2, Symmetry);
build_gstl(src_owned, dst, &cache.combined_src[node], &cache.combined_dst[node]);
if (src_owned) src_owned->destroyList();
}
if (dst) dst->destroyList();
cache.valid = true;
}
transfer_cached(cache.combined_src, cache.combined_dst, VarList1, VarList2, Symmetry, cache);
}
// OutBdLow2Hi_cached: cache grid segment lists, reuse buffers via transfer_cached
void Parallel::OutBdLow2Hi_cached(MyList<Patch> *PatcL, MyList<Patch> *PatfL,
MyList<var> *VarList1, MyList<var> *VarList2,
int Symmetry, SyncCache &cache)
{
if (!cache.valid)
{
int cpusize;
MPI_Comm_size(MPI_COMM_WORLD, &cpusize);
cache.cpusize = cpusize;
if (!cache.combined_src)
{
cache.combined_src = new MyList<Parallel::gridseg> *[cpusize];
cache.combined_dst = new MyList<Parallel::gridseg> *[cpusize];
cache.send_lengths = new int[cpusize];
cache.recv_lengths = new int[cpusize];
cache.send_bufs = new double *[cpusize];
cache.recv_bufs = new double *[cpusize];
cache.send_buf_caps = new int[cpusize];
cache.recv_buf_caps = new int[cpusize];
for (int i = 0; i < cpusize; i++)
{
cache.send_bufs[i] = cache.recv_bufs[i] = 0;
cache.send_buf_caps[i] = cache.recv_buf_caps[i] = 0;
}
cache.max_reqs = 2 * cpusize;
cache.reqs = new MPI_Request[cache.max_reqs];
cache.stats = new MPI_Status[cache.max_reqs];
}
MyList<Parallel::gridseg> *dst = build_buffer_gsl(PatfL);
for (int node = 0; node < cpusize; node++)
{
MyList<Parallel::gridseg> *src_owned = build_owned_gsl(PatcL, node, 4, Symmetry);
build_gstl(src_owned, dst, &cache.combined_src[node], &cache.combined_dst[node]);
if (src_owned) src_owned->destroyList();
}
if (dst) dst->destroyList();
cache.valid = true;
}
transfer_cached(cache.combined_src, cache.combined_dst, VarList1, VarList2, Symmetry, cache);
}
// OutBdLow2Himix_cached: same as OutBdLow2Hi_cached but uses transfermix for unpacking
void Parallel::OutBdLow2Himix_cached(MyList<Patch> *PatcL, MyList<Patch> *PatfL,
MyList<var> *VarList1, MyList<var> *VarList2,
int Symmetry, SyncCache &cache)
{
if (!cache.valid)
{
int cpusize;
MPI_Comm_size(MPI_COMM_WORLD, &cpusize);
cache.cpusize = cpusize;
if (!cache.combined_src)
{
cache.combined_src = new MyList<Parallel::gridseg> *[cpusize];
cache.combined_dst = new MyList<Parallel::gridseg> *[cpusize];
cache.send_lengths = new int[cpusize];
cache.recv_lengths = new int[cpusize];
cache.send_bufs = new double *[cpusize];
cache.recv_bufs = new double *[cpusize];
cache.send_buf_caps = new int[cpusize];
cache.recv_buf_caps = new int[cpusize];
for (int i = 0; i < cpusize; i++)
{
cache.send_bufs[i] = cache.recv_bufs[i] = 0;
cache.send_buf_caps[i] = cache.recv_buf_caps[i] = 0;
}
cache.max_reqs = 2 * cpusize;
cache.reqs = new MPI_Request[cache.max_reqs];
cache.stats = new MPI_Status[cache.max_reqs];
}
MyList<Parallel::gridseg> *dst = build_buffer_gsl(PatfL);
for (int node = 0; node < cpusize; node++)
{
MyList<Parallel::gridseg> *src_owned = build_owned_gsl(PatcL, node, 4, Symmetry);
build_gstl(src_owned, dst, &cache.combined_src[node], &cache.combined_dst[node]);
if (src_owned) src_owned->destroyList();
}
if (dst) dst->destroyList();
cache.valid = true;
}
// Use transfermix instead of transfer for mix-mode interpolation
int myrank;
MPI_Comm_size(MPI_COMM_WORLD, &cache.cpusize);
MPI_Comm_rank(MPI_COMM_WORLD, &myrank);
int cpusize = cache.cpusize;
int req_no = 0;
for (int node = 0; node < cpusize; node++)
{
if (node == myrank)
{
int length = data_packermix(0, cache.combined_src[myrank], cache.combined_dst[myrank], node, PACK, VarList1, VarList2, Symmetry);
cache.recv_lengths[node] = length;
if (length > 0)
{
if (length > cache.recv_buf_caps[node])
{
if (cache.recv_bufs[node]) delete[] cache.recv_bufs[node];
cache.recv_bufs[node] = new double[length];
cache.recv_buf_caps[node] = length;
}
data_packermix(cache.recv_bufs[node], cache.combined_src[myrank], cache.combined_dst[myrank], node, PACK, VarList1, VarList2, Symmetry);
}
}
else
{
int slength = data_packermix(0, cache.combined_src[myrank], cache.combined_dst[myrank], node, PACK, VarList1, VarList2, Symmetry);
cache.send_lengths[node] = slength;
if (slength > 0)
{
if (slength > cache.send_buf_caps[node])
{
if (cache.send_bufs[node]) delete[] cache.send_bufs[node];
cache.send_bufs[node] = new double[slength];
cache.send_buf_caps[node] = slength;
}
data_packermix(cache.send_bufs[node], cache.combined_src[myrank], cache.combined_dst[myrank], node, PACK, VarList1, VarList2, Symmetry);
MPI_Isend((void *)cache.send_bufs[node], slength, MPI_DOUBLE, node, 1, MPI_COMM_WORLD, cache.reqs + req_no++);
}
int rlength = data_packermix(0, cache.combined_src[node], cache.combined_dst[node], node, UNPACK, VarList1, VarList2, Symmetry);
cache.recv_lengths[node] = rlength;
if (rlength > 0)
{
if (rlength > cache.recv_buf_caps[node])
{
if (cache.recv_bufs[node]) delete[] cache.recv_bufs[node];
cache.recv_bufs[node] = new double[rlength];
cache.recv_buf_caps[node] = rlength;
}
MPI_Irecv((void *)cache.recv_bufs[node], rlength, MPI_DOUBLE, node, 1, MPI_COMM_WORLD, cache.reqs + req_no++);
}
}
}
MPI_Waitall(req_no, cache.reqs, cache.stats);
for (int node = 0; node < cpusize; node++)
if (cache.recv_bufs[node] && cache.recv_lengths[node] > 0)
data_packermix(cache.recv_bufs[node], cache.combined_src[node], cache.combined_dst[node], node, UNPACK, VarList1, VarList2, Symmetry);
}
// collect all buffer grid segments or blocks for given patch // collect all buffer grid segments or blocks for given patch
MyList<Parallel::gridseg> *Parallel::build_buffer_gsl(Patch *Pat) MyList<Parallel::gridseg> *Parallel::build_buffer_gsl(Patch *Pat)
{ {

View File

@@ -81,6 +81,43 @@ namespace Parallel
int Symmetry); int Symmetry);
void Sync(Patch *Pat, MyList<var> *VarList, int Symmetry); void Sync(Patch *Pat, MyList<var> *VarList, int Symmetry);
void Sync(MyList<Patch> *PatL, MyList<var> *VarList, int Symmetry); void Sync(MyList<Patch> *PatL, MyList<var> *VarList, int Symmetry);
void Sync_merged(MyList<Patch> *PatL, MyList<var> *VarList, int Symmetry);
struct SyncCache {
bool valid;
int cpusize;
MyList<gridseg> **combined_src;
MyList<gridseg> **combined_dst;
int *send_lengths;
int *recv_lengths;
double **send_bufs;
double **recv_bufs;
int *send_buf_caps;
int *recv_buf_caps;
MPI_Request *reqs;
MPI_Status *stats;
int max_reqs;
bool lengths_valid;
SyncCache();
void invalidate();
void destroy();
};
void Sync_cached(MyList<Patch> *PatL, MyList<var> *VarList, int Symmetry, SyncCache &cache);
void transfer_cached(MyList<gridseg> **src, MyList<gridseg> **dst,
MyList<var> *VarList1, MyList<var> *VarList2,
int Symmetry, SyncCache &cache);
struct AsyncSyncState {
int req_no;
bool active;
AsyncSyncState() : req_no(0), active(false) {}
};
void Sync_start(MyList<Patch> *PatL, MyList<var> *VarList, int Symmetry,
SyncCache &cache, AsyncSyncState &state);
void Sync_finish(SyncCache &cache, AsyncSyncState &state,
MyList<var> *VarList, int Symmetry);
void OutBdLow2Hi(Patch *Patc, Patch *Patf, void OutBdLow2Hi(Patch *Patc, Patch *Patf,
MyList<var> *VarList1 /* source */, MyList<var> *VarList2 /* target */, MyList<var> *VarList1 /* source */, MyList<var> *VarList2 /* target */,
int Symmetry); int Symmetry);
@@ -93,6 +130,15 @@ namespace Parallel
void OutBdLow2Himix(MyList<Patch> *PatcL, MyList<Patch> *PatfL, void OutBdLow2Himix(MyList<Patch> *PatcL, MyList<Patch> *PatfL,
MyList<var> *VarList1 /* source */, MyList<var> *VarList2 /* target */, MyList<var> *VarList1 /* source */, MyList<var> *VarList2 /* target */,
int Symmetry); int Symmetry);
void Restrict_cached(MyList<Patch> *PatcL, MyList<Patch> *PatfL,
MyList<var> *VarList1, MyList<var> *VarList2,
int Symmetry, SyncCache &cache);
void OutBdLow2Hi_cached(MyList<Patch> *PatcL, MyList<Patch> *PatfL,
MyList<var> *VarList1, MyList<var> *VarList2,
int Symmetry, SyncCache &cache);
void OutBdLow2Himix_cached(MyList<Patch> *PatcL, MyList<Patch> *PatfL,
MyList<var> *VarList1, MyList<var> *VarList2,
int Symmetry, SyncCache &cache);
void Prolong(Patch *Patc, Patch *Patf, void Prolong(Patch *Patc, Patch *Patf,
MyList<var> *VarList1 /* source */, MyList<var> *VarList2 /* target */, MyList<var> *VarList1 /* source */, MyList<var> *VarList2 /* target */,
int Symmetry); int Symmetry);

View File

@@ -321,22 +321,7 @@ void Z4c_class::Step(int lev, int YN)
} }
Pp = Pp->next; Pp = Pp->next;
} }
// check error information // NOTE: error check deferred to after Shell Patch computation to reduce MPI_Allreduce calls
{
int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#ifdef WithShell #ifdef WithShell
// evolve Shell Patches // evolve Shell Patches
@@ -468,24 +453,16 @@ void Z4c_class::Step(int lev, int YN)
sPp = sPp->next; sPp = sPp->next;
} }
} }
// check error information // Non-blocking error reduction overlapped with Sync to hide Allreduce latency
MPI_Request err_req_pre;
{ {
int erh = ERROR; int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD); MPI_Iallreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD, &err_req_pre);
}
if (ERROR)
{
SH->Dump_Data(StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables on Shell Patches at t = " << PhysTime << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
} }
#endif #endif
Parallel::Sync(GH->PatL[lev], SynchList_pre, Symmetry); Parallel::AsyncSyncState async_pre;
Parallel::Sync_start(GH->PatL[lev], SynchList_pre, Symmetry, sync_cache_pre[lev], async_pre);
#ifdef WithShell #ifdef WithShell
if (lev == 0) if (lev == 0)
@@ -504,6 +481,24 @@ void Z4c_class::Step(int lev, int YN)
} }
} }
#endif #endif
Parallel::Sync_finish(sync_cache_pre[lev], async_pre, SynchList_pre, Symmetry);
#ifdef WithShell
// Complete non-blocking error reduction and check
MPI_Wait(&err_req_pre, MPI_STATUS_IGNORE);
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], StateList, 0, PhysTime, dT_lev);
SH->Dump_Data(StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#endif
// for black hole position // for black hole position
if (BH_num > 0 && lev == GH->levels - 1) if (BH_num > 0 && lev == GH->levels - 1)
@@ -693,23 +688,7 @@ void Z4c_class::Step(int lev, int YN)
Pp = Pp->next; Pp = Pp->next;
} }
// check error information // NOTE: error check deferred to after Shell Patch computation to reduce MPI_Allreduce calls
{
int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#ifdef WithShell #ifdef WithShell
// evolve Shell Patches // evolve Shell Patches
@@ -850,25 +829,16 @@ void Z4c_class::Step(int lev, int YN)
sPp = sPp->next; sPp = sPp->next;
} }
} }
// check error information // Non-blocking error reduction overlapped with Sync to hide Allreduce latency
MPI_Request err_req_cor;
{ {
int erh = ERROR; int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD); MPI_Iallreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD, &err_req_cor);
}
if (ERROR)
{
SH->Dump_Data(SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN on Shell Patches in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
} }
#endif #endif
Parallel::Sync(GH->PatL[lev], SynchList_cor, Symmetry); Parallel::AsyncSyncState async_cor;
Parallel::Sync_start(GH->PatL[lev], SynchList_cor, Symmetry, sync_cache_cor[lev], async_cor);
#ifdef WithShell #ifdef WithShell
if (lev == 0) if (lev == 0)
@@ -886,6 +856,25 @@ void Z4c_class::Step(int lev, int YN)
<< " seconds! " << endl; << " seconds! " << endl;
} }
} }
#endif
Parallel::Sync_finish(sync_cache_cor[lev], async_cor, SynchList_cor, Symmetry);
#ifdef WithShell
// Complete non-blocking error reduction and check
MPI_Wait(&err_req_cor, MPI_STATUS_IGNORE);
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], SynchList_pre, 0, PhysTime, dT_lev);
SH->Dump_Data(SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#endif #endif
// for black hole position // for black hole position
if (BH_num > 0 && lev == GH->levels - 1) if (BH_num > 0 && lev == GH->levels - 1)
@@ -1252,22 +1241,7 @@ void Z4c_class::Step(int lev, int YN)
} }
} }
#endif #endif
// check error information // NOTE: error check deferred to after Shell Patch computation to reduce MPI_Allreduce calls
{
int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
// evolve Shell Patches // evolve Shell Patches
if (lev == 0) if (lev == 0)
@@ -1542,23 +1516,15 @@ void Z4c_class::Step(int lev, int YN)
} }
#endif #endif
} }
// check error information // Non-blocking error reduction overlapped with Sync to hide Allreduce latency
MPI_Request err_req_pre;
{ {
int erh = ERROR; int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD); MPI_Iallreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD, &err_req_pre);
}
if (ERROR)
{
SH->Dump_Data(StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables on Shell Patches at t = " << PhysTime << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
} }
Parallel::Sync(GH->PatL[lev], SynchList_pre, Symmetry); Parallel::AsyncSyncState async_pre;
Parallel::Sync_start(GH->PatL[lev], SynchList_pre, Symmetry, sync_cache_pre[lev], async_pre);
if (lev == 0) if (lev == 0)
{ {
@@ -1620,6 +1586,22 @@ void Z4c_class::Step(int lev, int YN)
} }
#endif #endif
} }
Parallel::Sync_finish(sync_cache_pre[lev], async_pre, SynchList_pre, Symmetry);
// Complete non-blocking error reduction and check
MPI_Wait(&err_req_pre, MPI_STATUS_IGNORE);
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], StateList, 0, PhysTime, dT_lev);
SH->Dump_Data(StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
// for black hole position // for black hole position
if (BH_num > 0 && lev == GH->levels - 1) if (BH_num > 0 && lev == GH->levels - 1)
@@ -1841,23 +1823,7 @@ void Z4c_class::Step(int lev, int YN)
Pp = Pp->next; Pp = Pp->next;
} }
// check error information // NOTE: error check deferred to after Shell Patch computation to reduce MPI_Allreduce calls
{
int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
// evolve Shell Patches // evolve Shell Patches
if (lev == 0) if (lev == 0)
@@ -2103,24 +2069,15 @@ void Z4c_class::Step(int lev, int YN)
sPp = sPp->next; sPp = sPp->next;
} }
} }
// check error information // Non-blocking error reduction overlapped with Sync to hide Allreduce latency
MPI_Request err_req_cor;
{ {
int erh = ERROR; int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD); MPI_Iallreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD, &err_req_cor);
}
if (ERROR)
{
SH->Dump_Data(SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN on Shell Patches in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
} }
Parallel::Sync(GH->PatL[lev], SynchList_cor, Symmetry); Parallel::AsyncSyncState async_cor;
Parallel::Sync_start(GH->PatL[lev], SynchList_cor, Symmetry, sync_cache_cor[lev], async_cor);
if (lev == 0) if (lev == 0)
{ {
@@ -2170,6 +2127,23 @@ void Z4c_class::Step(int lev, int YN)
} }
// end smooth // end smooth
#endif #endif
Parallel::Sync_finish(sync_cache_cor[lev], async_cor, SynchList_cor, Symmetry);
// Complete non-blocking error reduction and check
MPI_Wait(&err_req_cor, MPI_STATUS_IGNORE);
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], SynchList_pre, 0, PhysTime, dT_lev);
SH->Dump_Data(SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
// for black hole position // for black hole position
if (BH_num > 0 && lev == GH->levels - 1) if (BH_num > 0 && lev == GH->levels - 1)

View File

@@ -730,6 +730,12 @@ void bssn_class::Initialize()
PhysTime = StartTime; PhysTime = StartTime;
Setup_Black_Hole_position(); Setup_Black_Hole_position();
} }
// Initialize sync caches (per-level, for predictor and corrector)
sync_cache_pre = new Parallel::SyncCache[GH->levels];
sync_cache_cor = new Parallel::SyncCache[GH->levels];
sync_cache_rp_coarse = new Parallel::SyncCache[GH->levels];
sync_cache_rp_fine = new Parallel::SyncCache[GH->levels];
} }
//================================================================================================ //================================================================================================
@@ -981,6 +987,32 @@ bssn_class::~bssn_class()
delete Azzz; delete Azzz;
#endif #endif
// Destroy sync caches before GH
if (sync_cache_pre)
{
for (int i = 0; i < GH->levels; i++)
sync_cache_pre[i].destroy();
delete[] sync_cache_pre;
}
if (sync_cache_cor)
{
for (int i = 0; i < GH->levels; i++)
sync_cache_cor[i].destroy();
delete[] sync_cache_cor;
}
if (sync_cache_rp_coarse)
{
for (int i = 0; i < GH->levels; i++)
sync_cache_rp_coarse[i].destroy();
delete[] sync_cache_rp_coarse;
}
if (sync_cache_rp_fine)
{
for (int i = 0; i < GH->levels; i++)
sync_cache_rp_fine[i].destroy();
delete[] sync_cache_rp_fine;
}
delete GH; delete GH;
#ifdef WithShell #ifdef WithShell
delete SH; delete SH;
@@ -2181,6 +2213,7 @@ void bssn_class::Evolve(int Steps)
GH->Regrid(Symmetry, BH_num, Porgbr, Porg0, GH->Regrid(Symmetry, BH_num, Porgbr, Porg0,
SynchList_cor, OldStateList, StateList, SynchList_pre, SynchList_cor, OldStateList, StateList, SynchList_pre,
fgt(PhysTime - dT_mon, StartTime, dT_mon / 2), ErrorMonitor); fgt(PhysTime - dT_mon, StartTime, dT_mon / 2), ErrorMonitor);
for (int il = 0; il < GH->levels; il++) { sync_cache_pre[il].invalidate(); sync_cache_cor[il].invalidate(); sync_cache_rp_coarse[il].invalidate(); sync_cache_rp_fine[il].invalidate(); }
#endif #endif
#if (REGLEV == 0 && (PSTR == 1 || PSTR == 2)) #if (REGLEV == 0 && (PSTR == 1 || PSTR == 2))
@@ -2396,6 +2429,7 @@ void bssn_class::RecursiveStep(int lev)
GH->Regrid_Onelevel(lev, Symmetry, BH_num, Porgbr, Porg0, GH->Regrid_Onelevel(lev, Symmetry, BH_num, Porgbr, Porg0,
SynchList_cor, OldStateList, StateList, SynchList_pre, SynchList_cor, OldStateList, StateList, SynchList_pre,
fgt(PhysTime - dT_lev, StartTime, dT_lev / 2), ErrorMonitor); fgt(PhysTime - dT_lev, StartTime, dT_lev / 2), ErrorMonitor);
for (int il = 0; il < GH->levels; il++) { sync_cache_pre[il].invalidate(); sync_cache_cor[il].invalidate(); sync_cache_rp_coarse[il].invalidate(); sync_cache_rp_fine[il].invalidate(); }
#endif #endif
} }
@@ -2574,6 +2608,7 @@ void bssn_class::ParallelStep()
GH->Regrid_Onelevel(GH->mylev, Symmetry, BH_num, Porgbr, Porg0, GH->Regrid_Onelevel(GH->mylev, Symmetry, BH_num, Porgbr, Porg0,
SynchList_cor, OldStateList, StateList, SynchList_pre, SynchList_cor, OldStateList, StateList, SynchList_pre,
fgt(PhysTime - dT_lev, StartTime, dT_lev / 2), ErrorMonitor); fgt(PhysTime - dT_lev, StartTime, dT_lev / 2), ErrorMonitor);
for (int il = 0; il < GH->levels; il++) { sync_cache_pre[il].invalidate(); sync_cache_cor[il].invalidate(); sync_cache_rp_coarse[il].invalidate(); sync_cache_rp_fine[il].invalidate(); }
#endif #endif
} }
@@ -2740,6 +2775,7 @@ void bssn_class::ParallelStep()
GH->Regrid_Onelevel(lev + 1, Symmetry, BH_num, Porgbr, Porg0, GH->Regrid_Onelevel(lev + 1, Symmetry, BH_num, Porgbr, Porg0,
SynchList_cor, OldStateList, StateList, SynchList_pre, SynchList_cor, OldStateList, StateList, SynchList_pre,
fgt(PhysTime - dT_levp1, StartTime, dT_levp1 / 2), ErrorMonitor); fgt(PhysTime - dT_levp1, StartTime, dT_levp1 / 2), ErrorMonitor);
for (int il = 0; il < GH->levels; il++) { sync_cache_pre[il].invalidate(); sync_cache_cor[il].invalidate(); sync_cache_rp_coarse[il].invalidate(); sync_cache_rp_fine[il].invalidate(); }
// a_stream.clear(); // a_stream.clear();
// a_stream.str(""); // a_stream.str("");
@@ -2754,6 +2790,7 @@ void bssn_class::ParallelStep()
GH->Regrid_Onelevel(lev, Symmetry, BH_num, Porgbr, Porg0, GH->Regrid_Onelevel(lev, Symmetry, BH_num, Porgbr, Porg0,
SynchList_cor, OldStateList, StateList, SynchList_pre, SynchList_cor, OldStateList, StateList, SynchList_pre,
fgt(PhysTime - dT_lev, StartTime, dT_lev / 2), ErrorMonitor); fgt(PhysTime - dT_lev, StartTime, dT_lev / 2), ErrorMonitor);
for (int il = 0; il < GH->levels; il++) { sync_cache_pre[il].invalidate(); sync_cache_cor[il].invalidate(); sync_cache_rp_coarse[il].invalidate(); sync_cache_rp_fine[il].invalidate(); }
// a_stream.clear(); // a_stream.clear();
// a_stream.str(""); // a_stream.str("");
@@ -2772,6 +2809,7 @@ void bssn_class::ParallelStep()
GH->Regrid_Onelevel(lev - 1, Symmetry, BH_num, Porgbr, Porg0, GH->Regrid_Onelevel(lev - 1, Symmetry, BH_num, Porgbr, Porg0,
SynchList_cor, OldStateList, StateList, SynchList_pre, SynchList_cor, OldStateList, StateList, SynchList_pre,
fgt(PhysTime - dT_lev, StartTime, dT_levm1 / 2), ErrorMonitor); fgt(PhysTime - dT_lev, StartTime, dT_levm1 / 2), ErrorMonitor);
for (int il = 0; il < GH->levels; il++) { sync_cache_pre[il].invalidate(); sync_cache_cor[il].invalidate(); sync_cache_rp_coarse[il].invalidate(); sync_cache_rp_fine[il].invalidate(); }
// a_stream.clear(); // a_stream.clear();
// a_stream.str(""); // a_stream.str("");
@@ -2787,6 +2825,7 @@ void bssn_class::ParallelStep()
GH->Regrid_Onelevel(lev - 1, Symmetry, BH_num, Porgbr, Porg0, GH->Regrid_Onelevel(lev - 1, Symmetry, BH_num, Porgbr, Porg0,
SynchList_cor, OldStateList, StateList, SynchList_pre, SynchList_cor, OldStateList, StateList, SynchList_pre,
fgt(PhysTime - dT_lev, StartTime, dT_levm1 / 2), ErrorMonitor); fgt(PhysTime - dT_lev, StartTime, dT_levm1 / 2), ErrorMonitor);
for (int il = 0; il < GH->levels; il++) { sync_cache_pre[il].invalidate(); sync_cache_cor[il].invalidate(); sync_cache_rp_coarse[il].invalidate(); sync_cache_rp_fine[il].invalidate(); }
// a_stream.clear(); // a_stream.clear();
// a_stream.str(""); // a_stream.str("");
@@ -3158,21 +3197,7 @@ void bssn_class::Step(int lev, int YN)
} }
Pp = Pp->next; Pp = Pp->next;
} }
// check error information // NOTE: error check deferred to after Shell Patch computation to reduce MPI_Allreduce calls
{
int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables at t = " << PhysTime << ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#ifdef WithShell #ifdef WithShell
// evolve Shell Patches // evolve Shell Patches
@@ -3316,25 +3341,16 @@ void bssn_class::Step(int lev, int YN)
#endif #endif
} }
// check error information // Non-blocking error reduction overlapped with Sync to hide Allreduce latency
MPI_Request err_req;
{ {
int erh = ERROR; int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD); MPI_Iallreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD, &err_req);
}
if (ERROR)
{
SH->Dump_Data(StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables on Shell Patches at t = " << PhysTime << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
} }
#endif #endif
Parallel::Sync(GH->PatL[lev], SynchList_pre, Symmetry); Parallel::AsyncSyncState async_pre;
Parallel::Sync_start(GH->PatL[lev], SynchList_pre, Symmetry, sync_cache_pre[lev], async_pre);
#ifdef WithShell #ifdef WithShell
if (lev == 0) if (lev == 0)
@@ -3353,6 +3369,23 @@ void bssn_class::Step(int lev, int YN)
} }
} }
#endif #endif
Parallel::Sync_finish(sync_cache_pre[lev], async_pre, SynchList_pre, Symmetry);
#ifdef WithShell
// Complete non-blocking error reduction and check
MPI_Wait(&err_req, MPI_STATUS_IGNORE);
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], StateList, 0, PhysTime, dT_lev);
SH->Dump_Data(StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables at t = " << PhysTime << ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#endif
#if (MAPBH == 0) #if (MAPBH == 0)
// for black hole position // for black hole position
@@ -3528,24 +3561,7 @@ void bssn_class::Step(int lev, int YN)
Pp = Pp->next; Pp = Pp->next;
} }
// check error information // NOTE: error check deferred to after Shell Patch computation to reduce MPI_Allreduce calls
{
int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#ifdef WithShell #ifdef WithShell
// evolve Shell Patches // evolve Shell Patches
@@ -3685,26 +3701,16 @@ void bssn_class::Step(int lev, int YN)
sPp = sPp->next; sPp = sPp->next;
} }
} }
// check error information // Non-blocking error reduction overlapped with Sync to hide Allreduce latency
MPI_Request err_req_cor;
{ {
int erh = ERROR; int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD); MPI_Iallreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD, &err_req_cor);
}
if (ERROR)
{
SH->Dump_Data(SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN on Shell Patches in RK4 substep#"
<< iter_count << " variables at t = "
<< PhysTime << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
} }
#endif #endif
Parallel::Sync(GH->PatL[lev], SynchList_cor, Symmetry); Parallel::AsyncSyncState async_cor;
Parallel::Sync_start(GH->PatL[lev], SynchList_cor, Symmetry, sync_cache_cor[lev], async_cor);
#ifdef WithShell #ifdef WithShell
if (lev == 0) if (lev == 0)
@@ -3723,6 +3729,25 @@ void bssn_class::Step(int lev, int YN)
} }
} }
#endif #endif
Parallel::Sync_finish(sync_cache_cor[lev], async_cor, SynchList_cor, Symmetry);
#ifdef WithShell
// Complete non-blocking error reduction and check
MPI_Wait(&err_req_cor, MPI_STATUS_IGNORE);
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], SynchList_pre, 0, PhysTime, dT_lev);
SH->Dump_Data(SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#endif
#if (MAPBH == 0) #if (MAPBH == 0)
// for black hole position // for black hole position
@@ -4034,22 +4059,7 @@ void bssn_class::Step(int lev, int YN)
} }
Pp = Pp->next; Pp = Pp->next;
} }
// check error information // NOTE: error check deferred to after Shell Patch computation to reduce MPI_Allreduce calls
{
int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#ifdef WithShell #ifdef WithShell
// evolve Shell Patches // evolve Shell Patches
@@ -4190,25 +4200,16 @@ void bssn_class::Step(int lev, int YN)
} }
#endif #endif
} }
// check error information // Non-blocking error reduction overlapped with Sync to hide Allreduce latency
MPI_Request err_req;
{ {
int erh = ERROR; int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD); MPI_Iallreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD, &err_req);
}
if (ERROR)
{
SH->Dump_Data(StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables on Shell Patches at t = "
<< PhysTime << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
} }
#endif #endif
Parallel::Sync(GH->PatL[lev], SynchList_pre, Symmetry); Parallel::AsyncSyncState async_pre;
Parallel::Sync_start(GH->PatL[lev], SynchList_pre, Symmetry, sync_cache_pre[lev], async_pre);
#ifdef WithShell #ifdef WithShell
if (lev == 0) if (lev == 0)
@@ -4222,8 +4223,26 @@ void bssn_class::Step(int lev, int YN)
prev_clock = curr_clock; prev_clock = curr_clock;
curr_clock = clock(); curr_clock = clock();
cout << " Shell stuff synchronization used " cout << " Shell stuff synchronization used "
<< (double)(curr_clock - prev_clock) / ((double)CLOCKS_PER_SEC) << (double)(curr_clock - prev_clock) / ((double)CLOCKS_PER_SEC)
<< " seconds! " << endl; << " seconds! " << endl;
}
}
#endif
Parallel::Sync_finish(sync_cache_pre[lev], async_pre, SynchList_pre, Symmetry);
#ifdef WithShell
// Complete non-blocking error reduction and check
MPI_Wait(&err_req, MPI_STATUS_IGNORE);
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], StateList, 0, PhysTime, dT_lev);
SH->Dump_Data(StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
} }
} }
#endif #endif
@@ -4386,23 +4405,7 @@ void bssn_class::Step(int lev, int YN)
Pp = Pp->next; Pp = Pp->next;
} }
// check error information // NOTE: error check deferred to after Shell Patch computation to reduce MPI_Allreduce calls
{
int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD);
}
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#ifdef WithShell #ifdef WithShell
// evolve Shell Patches // evolve Shell Patches
@@ -4542,25 +4545,16 @@ void bssn_class::Step(int lev, int YN)
sPp = sPp->next; sPp = sPp->next;
} }
} }
// check error information // Non-blocking error reduction overlapped with Sync to hide Allreduce latency
MPI_Request err_req_cor;
{ {
int erh = ERROR; int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD); MPI_Iallreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD, &err_req_cor);
}
if (ERROR)
{
SH->Dump_Data(SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN on Shell Patches in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
} }
#endif #endif
Parallel::Sync(GH->PatL[lev], SynchList_cor, Symmetry); Parallel::AsyncSyncState async_cor;
Parallel::Sync_start(GH->PatL[lev], SynchList_cor, Symmetry, sync_cache_cor[lev], async_cor);
#ifdef WithShell #ifdef WithShell
if (lev == 0) if (lev == 0)
@@ -4578,6 +4572,25 @@ void bssn_class::Step(int lev, int YN)
<< " seconds! " << endl; << " seconds! " << endl;
} }
} }
#endif
Parallel::Sync_finish(sync_cache_cor[lev], async_cor, SynchList_cor, Symmetry);
#ifdef WithShell
// Complete non-blocking error reduction and check
MPI_Wait(&err_req_cor, MPI_STATUS_IGNORE);
if (ERROR)
{
Parallel::Dump_Data(GH->PatL[lev], SynchList_pre, 0, PhysTime, dT_lev);
SH->Dump_Data(SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime
<< ", lev = " << lev << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
#endif #endif
// for black hole position // for black hole position
if (BH_num > 0 && lev == GH->levels - 1) if (BH_num > 0 && lev == GH->levels - 1)
@@ -4943,11 +4956,19 @@ void bssn_class::Step(int lev, int YN)
// misc::tillherecheck(GH->Commlev[lev],GH->start_rank[lev],"after Predictor rhs calculation"); // misc::tillherecheck(GH->Commlev[lev],GH->start_rank[lev],"after Predictor rhs calculation");
// check error information // Non-blocking error reduction overlapped with Sync to hide Allreduce latency
MPI_Request err_req;
{ {
int erh = ERROR; int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, GH->Commlev[lev]); MPI_Iallreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, GH->Commlev[lev], &err_req);
} }
// misc::tillherecheck(GH->Commlev[lev],GH->start_rank[lev],"before Predictor sync");
Parallel::Sync_cached(GH->PatL[lev], SynchList_pre, Symmetry, sync_cache_pre[lev]);
// Complete non-blocking error reduction and check
MPI_Wait(&err_req, MPI_STATUS_IGNORE);
if (ERROR) if (ERROR)
{ {
Parallel::Dump_Data(GH->PatL[lev], StateList, 0, PhysTime, dT_lev); Parallel::Dump_Data(GH->PatL[lev], StateList, 0, PhysTime, dT_lev);
@@ -4959,10 +4980,6 @@ void bssn_class::Step(int lev, int YN)
} }
} }
// misc::tillherecheck(GH->Commlev[lev],GH->start_rank[lev],"before Predictor sync");
Parallel::Sync(GH->PatL[lev], SynchList_pre, Symmetry);
#if (MAPBH == 0) #if (MAPBH == 0)
// for black hole position // for black hole position
if (BH_num > 0 && lev == GH->levels - 1) if (BH_num > 0 && lev == GH->levels - 1)
@@ -5140,11 +5157,21 @@ void bssn_class::Step(int lev, int YN)
// misc::tillherecheck(GH->Commlev[lev],GH->start_rank[lev],"before Corrector error check"); // misc::tillherecheck(GH->Commlev[lev],GH->start_rank[lev],"before Corrector error check");
// check error information // Non-blocking error reduction overlapped with Sync to hide Allreduce latency
MPI_Request err_req_cor;
{ {
int erh = ERROR; int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, GH->Commlev[lev]); MPI_Iallreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, GH->Commlev[lev], &err_req_cor);
} }
// misc::tillherecheck(GH->Commlev[lev],GH->start_rank[lev],"before Corrector sync");
Parallel::Sync_cached(GH->PatL[lev], SynchList_cor, Symmetry, sync_cache_cor[lev]);
// misc::tillherecheck(GH->Commlev[lev],GH->start_rank[lev],"after Corrector sync");
// Complete non-blocking error reduction and check
MPI_Wait(&err_req_cor, MPI_STATUS_IGNORE);
if (ERROR) if (ERROR)
{ {
Parallel::Dump_Data(GH->PatL[lev], SynchList_pre, 0, PhysTime, dT_lev); Parallel::Dump_Data(GH->PatL[lev], SynchList_pre, 0, PhysTime, dT_lev);
@@ -5158,12 +5185,6 @@ void bssn_class::Step(int lev, int YN)
} }
} }
// misc::tillherecheck(GH->Commlev[lev],GH->start_rank[lev],"before Corrector sync");
Parallel::Sync(GH->PatL[lev], SynchList_cor, Symmetry);
// misc::tillherecheck(GH->Commlev[lev],GH->start_rank[lev],"after Corrector sync");
#if (MAPBH == 0) #if (MAPBH == 0)
// for black hole position // for black hole position
if (BH_num > 0 && lev == GH->levels - 1) if (BH_num > 0 && lev == GH->levels - 1)
@@ -5447,21 +5468,11 @@ void bssn_class::SHStep()
#if (PSTR == 1 || PSTR == 2) #if (PSTR == 1 || PSTR == 2)
// misc::tillherecheck(GH->Commlev[lev],GH->start_rank[lev],"before Predictor's error check"); // misc::tillherecheck(GH->Commlev[lev],GH->start_rank[lev],"before Predictor's error check");
#endif #endif
// check error information // Non-blocking error reduction overlapped with Synch to hide Allreduce latency
MPI_Request err_req;
{ {
int erh = ERROR; int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD); MPI_Iallreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD, &err_req);
}
if (ERROR)
{
SH->Dump_Data(StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables on Shell Patches at t = " << PhysTime << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
} }
{ {
@@ -5479,6 +5490,19 @@ void bssn_class::SHStep()
} }
} }
// Complete non-blocking error reduction and check
MPI_Wait(&err_req, MPI_STATUS_IGNORE);
if (ERROR)
{
SH->Dump_Data(StateList, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN in state variables on Shell Patches at t = " << PhysTime << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
// corrector // corrector
for (iter_count = 1; iter_count < 4; iter_count++) for (iter_count = 1; iter_count < 4; iter_count++)
{ {
@@ -5621,21 +5645,11 @@ void bssn_class::SHStep()
sPp = sPp->next; sPp = sPp->next;
} }
} }
// check error information // Non-blocking error reduction overlapped with Synch to hide Allreduce latency
MPI_Request err_req_cor;
{ {
int erh = ERROR; int erh = ERROR;
MPI_Allreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD); MPI_Iallreduce(&erh, &ERROR, 1, MPI_INT, MPI_SUM, MPI_COMM_WORLD, &err_req_cor);
}
if (ERROR)
{
SH->Dump_Data(SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN on Shell Patches in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
} }
{ {
@@ -5653,6 +5667,20 @@ void bssn_class::SHStep()
} }
} }
// Complete non-blocking error reduction and check
MPI_Wait(&err_req_cor, MPI_STATUS_IGNORE);
if (ERROR)
{
SH->Dump_Data(SynchList_pre, 0, PhysTime, dT_lev);
if (myrank == 0)
{
if (ErrorMonitor->outfile)
ErrorMonitor->outfile << "find NaN on Shell Patches in RK4 substep#" << iter_count
<< " variables at t = " << PhysTime << endl;
MPI_Abort(MPI_COMM_WORLD, 1);
}
}
sPp = SH->PatL; sPp = SH->PatL;
while (sPp) while (sPp)
{ {
@@ -5781,7 +5809,7 @@ void bssn_class::RestrictProlong(int lev, int YN, bool BB,
// misc::tillherecheck(GH->Commlev[GH->mylev],GH->start_rank[GH->mylev],a_stream.str()); // misc::tillherecheck(GH->Commlev[GH->mylev],GH->start_rank[GH->mylev],a_stream.str());
#endif #endif
Parallel::Sync(GH->PatL[lev - 1], SynchList_pre, Symmetry); Parallel::Sync_cached(GH->PatL[lev - 1], SynchList_pre, Symmetry, sync_cache_rp_coarse[lev]);
#if (PSTR == 1 || PSTR == 2) #if (PSTR == 1 || PSTR == 2)
// a_stream.clear(); // a_stream.clear();
@@ -5791,21 +5819,11 @@ void bssn_class::RestrictProlong(int lev, int YN, bool BB,
#endif #endif
#if (RPB == 0) #if (RPB == 0)
Ppc = GH->PatL[lev - 1];
while (Ppc)
{
Pp = GH->PatL[lev];
while (Pp)
{
#if (MIXOUTB == 0) #if (MIXOUTB == 0)
Parallel::OutBdLow2Hi(Ppc->data, Pp->data, SynchList_pre, SL, Symmetry); Parallel::OutBdLow2Hi(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SL, Symmetry);
#elif (MIXOUTB == 1) #elif (MIXOUTB == 1)
Parallel::OutBdLow2Himix(Ppc->data, Pp->data, SynchList_pre, SL, Symmetry); Parallel::OutBdLow2Himix(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SL, Symmetry);
#endif #endif
Pp = Pp->next;
}
Ppc = Ppc->next;
}
#elif (RPB == 1) #elif (RPB == 1)
// Parallel::OutBdLow2Hi_bam(GH->PatL[lev-1],GH->PatL[lev],SynchList_pre,SL,Symmetry); // Parallel::OutBdLow2Hi_bam(GH->PatL[lev-1],GH->PatL[lev],SynchList_pre,SL,Symmetry);
Parallel::OutBdLow2Hi_bam(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SL, GH->bdsul[lev], Symmetry); Parallel::OutBdLow2Hi_bam(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SL, GH->bdsul[lev], Symmetry);
@@ -5842,7 +5860,7 @@ void bssn_class::RestrictProlong(int lev, int YN, bool BB,
// misc::tillherecheck(GH->Commlev[GH->mylev],GH->start_rank[GH->mylev],a_stream.str()); // misc::tillherecheck(GH->Commlev[GH->mylev],GH->start_rank[GH->mylev],a_stream.str());
#endif #endif
Parallel::Sync(GH->PatL[lev - 1], SL, Symmetry); Parallel::Sync_cached(GH->PatL[lev - 1], SL, Symmetry, sync_cache_rp_coarse[lev]);
#if (PSTR == 1 || PSTR == 2) #if (PSTR == 1 || PSTR == 2)
// a_stream.clear(); // a_stream.clear();
@@ -5852,21 +5870,11 @@ void bssn_class::RestrictProlong(int lev, int YN, bool BB,
#endif #endif
#if (RPB == 0) #if (RPB == 0)
Ppc = GH->PatL[lev - 1];
while (Ppc)
{
Pp = GH->PatL[lev];
while (Pp)
{
#if (MIXOUTB == 0) #if (MIXOUTB == 0)
Parallel::OutBdLow2Hi(Ppc->data, Pp->data, SL, SL, Symmetry); Parallel::OutBdLow2Hi(GH->PatL[lev - 1], GH->PatL[lev], SL, SL, Symmetry);
#elif (MIXOUTB == 1) #elif (MIXOUTB == 1)
Parallel::OutBdLow2Himix(Ppc->data, Pp->data, SL, SL, Symmetry); Parallel::OutBdLow2Himix(GH->PatL[lev - 1], GH->PatL[lev], SL, SL, Symmetry);
#endif #endif
Pp = Pp->next;
}
Ppc = Ppc->next;
}
#elif (RPB == 1) #elif (RPB == 1)
// Parallel::OutBdLow2Hi_bam(GH->PatL[lev-1],GH->PatL[lev],SL,SL,Symmetry); // Parallel::OutBdLow2Hi_bam(GH->PatL[lev-1],GH->PatL[lev],SL,SL,Symmetry);
Parallel::OutBdLow2Hi_bam(GH->PatL[lev - 1], GH->PatL[lev], SL, SL, GH->bdsul[lev], Symmetry); Parallel::OutBdLow2Hi_bam(GH->PatL[lev - 1], GH->PatL[lev], SL, SL, GH->bdsul[lev], Symmetry);
@@ -5880,7 +5888,7 @@ void bssn_class::RestrictProlong(int lev, int YN, bool BB,
#endif #endif
} }
Parallel::Sync(GH->PatL[lev], SL, Symmetry); Parallel::Sync_cached(GH->PatL[lev], SL, Symmetry, sync_cache_rp_fine[lev]);
#if (PSTR == 1 || PSTR == 2) #if (PSTR == 1 || PSTR == 2)
// a_stream.clear(); // a_stream.clear();
@@ -5938,24 +5946,14 @@ void bssn_class::RestrictProlong_aux(int lev, int YN, bool BB,
Parallel::Restrict_bam(GH->PatL[lev - 1], GH->PatL[lev], SL, SynchList_pre, GH->rsul[lev], Symmetry); Parallel::Restrict_bam(GH->PatL[lev - 1], GH->PatL[lev], SL, SynchList_pre, GH->rsul[lev], Symmetry);
#endif #endif
Parallel::Sync(GH->PatL[lev - 1], SynchList_pre, Symmetry); Parallel::Sync_cached(GH->PatL[lev - 1], SynchList_pre, Symmetry, sync_cache_rp_coarse[lev]);
#if (RPB == 0) #if (RPB == 0)
Ppc = GH->PatL[lev - 1];
while (Ppc)
{
Pp = GH->PatL[lev];
while (Pp)
{
#if (MIXOUTB == 0) #if (MIXOUTB == 0)
Parallel::OutBdLow2Hi(Ppc->data, Pp->data, SynchList_pre, SL, Symmetry); Parallel::OutBdLow2Hi(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SL, Symmetry);
#elif (MIXOUTB == 1) #elif (MIXOUTB == 1)
Parallel::OutBdLow2Himix(Ppc->data, Pp->data, SynchList_pre, SL, Symmetry); Parallel::OutBdLow2Himix(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SL, Symmetry);
#endif #endif
Pp = Pp->next;
}
Ppc = Ppc->next;
}
#elif (RPB == 1) #elif (RPB == 1)
// Parallel::OutBdLow2Hi_bam(GH->PatL[lev-1],GH->PatL[lev],SynchList_pre,SL,Symmetry); // Parallel::OutBdLow2Hi_bam(GH->PatL[lev-1],GH->PatL[lev],SynchList_pre,SL,Symmetry);
Parallel::OutBdLow2Hi_bam(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SL, GH->bdsul[lev], Symmetry); Parallel::OutBdLow2Hi_bam(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SL, GH->bdsul[lev], Symmetry);
@@ -5970,31 +5968,21 @@ void bssn_class::RestrictProlong_aux(int lev, int YN, bool BB,
Parallel::Restrict_bam(GH->PatL[lev - 1], GH->PatL[lev], SL, SL, GH->rsul[lev], Symmetry); Parallel::Restrict_bam(GH->PatL[lev - 1], GH->PatL[lev], SL, SL, GH->rsul[lev], Symmetry);
#endif #endif
Parallel::Sync(GH->PatL[lev - 1], SL, Symmetry); Parallel::Sync_cached(GH->PatL[lev - 1], SL, Symmetry, sync_cache_rp_coarse[lev]);
#if (RPB == 0) #if (RPB == 0)
Ppc = GH->PatL[lev - 1];
while (Ppc)
{
Pp = GH->PatL[lev];
while (Pp)
{
#if (MIXOUTB == 0) #if (MIXOUTB == 0)
Parallel::OutBdLow2Hi(Ppc->data, Pp->data, SL, SL, Symmetry); Parallel::OutBdLow2Hi(GH->PatL[lev - 1], GH->PatL[lev], SL, SL, Symmetry);
#elif (MIXOUTB == 1) #elif (MIXOUTB == 1)
Parallel::OutBdLow2Himix(Ppc->data, Pp->data, SL, SL, Symmetry); Parallel::OutBdLow2Himix(GH->PatL[lev - 1], GH->PatL[lev], SL, SL, Symmetry);
#endif #endif
Pp = Pp->next;
}
Ppc = Ppc->next;
}
#elif (RPB == 1) #elif (RPB == 1)
// Parallel::OutBdLow2Hi_bam(GH->PatL[lev-1],GH->PatL[lev],SL,SL,Symmetry); // Parallel::OutBdLow2Hi_bam(GH->PatL[lev-1],GH->PatL[lev],SL,SL,Symmetry);
Parallel::OutBdLow2Hi_bam(GH->PatL[lev - 1], GH->PatL[lev], SL, SL, GH->bdsul[lev], Symmetry); Parallel::OutBdLow2Hi_bam(GH->PatL[lev - 1], GH->PatL[lev], SL, SL, GH->bdsul[lev], Symmetry);
#endif #endif
} }
Parallel::Sync(GH->PatL[lev], SL, Symmetry); Parallel::Sync_cached(GH->PatL[lev], SL, Symmetry, sync_cache_rp_fine[lev]);
} }
} }
@@ -6045,24 +6033,14 @@ void bssn_class::RestrictProlong(int lev, int YN, bool BB)
Parallel::Restrict_bam(GH->PatL[lev - 1], GH->PatL[lev], SynchList_cor, SynchList_pre, GH->rsul[lev], Symmetry); Parallel::Restrict_bam(GH->PatL[lev - 1], GH->PatL[lev], SynchList_cor, SynchList_pre, GH->rsul[lev], Symmetry);
#endif #endif
Parallel::Sync(GH->PatL[lev - 1], SynchList_pre, Symmetry); Parallel::Sync_cached(GH->PatL[lev - 1], SynchList_pre, Symmetry, sync_cache_rp_coarse[lev]);
#if (RPB == 0) #if (RPB == 0)
Ppc = GH->PatL[lev - 1];
while (Ppc)
{
Pp = GH->PatL[lev];
while (Pp)
{
#if (MIXOUTB == 0) #if (MIXOUTB == 0)
Parallel::OutBdLow2Hi(Ppc->data, Pp->data, SynchList_pre, SynchList_cor, Symmetry); Parallel::OutBdLow2Hi(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SynchList_cor, Symmetry);
#elif (MIXOUTB == 1) #elif (MIXOUTB == 1)
Parallel::OutBdLow2Himix(Ppc->data, Pp->data, SynchList_pre, SynchList_cor, Symmetry); Parallel::OutBdLow2Himix(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SynchList_cor, Symmetry);
#endif #endif
Pp = Pp->next;
}
Ppc = Ppc->next;
}
#elif (RPB == 1) #elif (RPB == 1)
// Parallel::OutBdLow2Hi_bam(GH->PatL[lev-1],GH->PatL[lev],SynchList_pre,SynchList_cor,Symmetry); // Parallel::OutBdLow2Hi_bam(GH->PatL[lev-1],GH->PatL[lev],SynchList_pre,SynchList_cor,Symmetry);
Parallel::OutBdLow2Hi_bam(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SynchList_cor, GH->bdsul[lev], Symmetry); Parallel::OutBdLow2Hi_bam(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SynchList_cor, GH->bdsul[lev], Symmetry);
@@ -6079,31 +6057,21 @@ void bssn_class::RestrictProlong(int lev, int YN, bool BB)
Parallel::Restrict_bam(GH->PatL[lev - 1], GH->PatL[lev], SynchList_cor, StateList, GH->rsul[lev], Symmetry); Parallel::Restrict_bam(GH->PatL[lev - 1], GH->PatL[lev], SynchList_cor, StateList, GH->rsul[lev], Symmetry);
#endif #endif
Parallel::Sync(GH->PatL[lev - 1], StateList, Symmetry); Parallel::Sync_cached(GH->PatL[lev - 1], StateList, Symmetry, sync_cache_rp_coarse[lev]);
#if (RPB == 0) #if (RPB == 0)
Ppc = GH->PatL[lev - 1];
while (Ppc)
{
Pp = GH->PatL[lev];
while (Pp)
{
#if (MIXOUTB == 0) #if (MIXOUTB == 0)
Parallel::OutBdLow2Hi(Ppc->data, Pp->data, StateList, SynchList_cor, Symmetry); Parallel::OutBdLow2Hi(GH->PatL[lev - 1], GH->PatL[lev], StateList, SynchList_cor, Symmetry);
#elif (MIXOUTB == 1) #elif (MIXOUTB == 1)
Parallel::OutBdLow2Himix(Ppc->data, Pp->data, StateList, SynchList_cor, Symmetry); Parallel::OutBdLow2Himix(GH->PatL[lev - 1], GH->PatL[lev], StateList, SynchList_cor, Symmetry);
#endif #endif
Pp = Pp->next;
}
Ppc = Ppc->next;
}
#elif (RPB == 1) #elif (RPB == 1)
// Parallel::OutBdLow2Hi_bam(GH->PatL[lev-1],GH->PatL[lev],StateList,SynchList_cor,Symmetry); // Parallel::OutBdLow2Hi_bam(GH->PatL[lev-1],GH->PatL[lev],StateList,SynchList_cor,Symmetry);
Parallel::OutBdLow2Hi_bam(GH->PatL[lev - 1], GH->PatL[lev], StateList, SynchList_cor, GH->bdsul[lev], Symmetry); Parallel::OutBdLow2Hi_bam(GH->PatL[lev - 1], GH->PatL[lev], StateList, SynchList_cor, GH->bdsul[lev], Symmetry);
#endif #endif
} }
Parallel::Sync(GH->PatL[lev], SynchList_cor, Symmetry); Parallel::Sync_cached(GH->PatL[lev], SynchList_cor, Symmetry, sync_cache_rp_fine[lev]);
} }
} }
@@ -6133,21 +6101,11 @@ void bssn_class::ProlongRestrict(int lev, int YN, bool BB)
} }
#if (RPB == 0) #if (RPB == 0)
Ppc = GH->PatL[lev - 1];
while (Ppc)
{
Pp = GH->PatL[lev];
while (Pp)
{
#if (MIXOUTB == 0) #if (MIXOUTB == 0)
Parallel::OutBdLow2Hi(Ppc->data, Pp->data, SynchList_pre, SynchList_cor, Symmetry); Parallel::OutBdLow2Hi(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SynchList_cor, Symmetry);
#elif (MIXOUTB == 1) #elif (MIXOUTB == 1)
Parallel::OutBdLow2Himix(Ppc->data, Pp->data, SynchList_pre, SynchList_cor, Symmetry); Parallel::OutBdLow2Himix(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SynchList_cor, Symmetry);
#endif #endif
Pp = Pp->next;
}
Ppc = Ppc->next;
}
#elif (RPB == 1) #elif (RPB == 1)
// Parallel::OutBdLow2Hi_bam(GH->PatL[lev-1],GH->PatL[lev],SynchList_pre,SynchList_cor,Symmetry); // Parallel::OutBdLow2Hi_bam(GH->PatL[lev-1],GH->PatL[lev],SynchList_pre,SynchList_cor,Symmetry);
Parallel::OutBdLow2Hi_bam(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SynchList_cor, GH->bdsul[lev], Symmetry); Parallel::OutBdLow2Hi_bam(GH->PatL[lev - 1], GH->PatL[lev], SynchList_pre, SynchList_cor, GH->bdsul[lev], Symmetry);
@@ -6156,21 +6114,11 @@ void bssn_class::ProlongRestrict(int lev, int YN, bool BB)
else // no time refinement levels and for all same time levels else // no time refinement levels and for all same time levels
{ {
#if (RPB == 0) #if (RPB == 0)
Ppc = GH->PatL[lev - 1];
while (Ppc)
{
Pp = GH->PatL[lev];
while (Pp)
{
#if (MIXOUTB == 0) #if (MIXOUTB == 0)
Parallel::OutBdLow2Hi(Ppc->data, Pp->data, StateList, SynchList_cor, Symmetry); Parallel::OutBdLow2Hi(GH->PatL[lev - 1], GH->PatL[lev], StateList, SynchList_cor, Symmetry);
#elif (MIXOUTB == 1) #elif (MIXOUTB == 1)
Parallel::OutBdLow2Himix(Ppc->data, Pp->data, StateList, SynchList_cor, Symmetry); Parallel::OutBdLow2Himix(GH->PatL[lev - 1], GH->PatL[lev], StateList, SynchList_cor, Symmetry);
#endif #endif
Pp = Pp->next;
}
Ppc = Ppc->next;
}
#elif (RPB == 1) #elif (RPB == 1)
// Parallel::OutBdLow2Hi_bam(GH->PatL[lev-1],GH->PatL[lev],StateList,SynchList_cor,Symmetry); // Parallel::OutBdLow2Hi_bam(GH->PatL[lev-1],GH->PatL[lev],StateList,SynchList_cor,Symmetry);
Parallel::OutBdLow2Hi_bam(GH->PatL[lev - 1], GH->PatL[lev], StateList, SynchList_cor, GH->bdsul[lev], Symmetry); Parallel::OutBdLow2Hi_bam(GH->PatL[lev - 1], GH->PatL[lev], StateList, SynchList_cor, GH->bdsul[lev], Symmetry);
@@ -6186,10 +6134,10 @@ void bssn_class::ProlongRestrict(int lev, int YN, bool BB)
#else #else
Parallel::Restrict_after(GH->PatL[lev - 1], GH->PatL[lev], SynchList_cor, StateList, Symmetry); Parallel::Restrict_after(GH->PatL[lev - 1], GH->PatL[lev], SynchList_cor, StateList, Symmetry);
#endif #endif
Parallel::Sync(GH->PatL[lev - 1], StateList, Symmetry); Parallel::Sync_cached(GH->PatL[lev - 1], StateList, Symmetry, sync_cache_rp_coarse[lev]);
} }
Parallel::Sync(GH->PatL[lev], SynchList_cor, Symmetry); Parallel::Sync_cached(GH->PatL[lev], SynchList_cor, Symmetry, sync_cache_rp_fine[lev]);
} }
} }
#undef MIXOUTB #undef MIXOUTB

View File

@@ -126,6 +126,11 @@ public:
MyList<var> *OldStateList, *DumpList; MyList<var> *OldStateList, *DumpList;
MyList<var> *ConstraintList; MyList<var> *ConstraintList;
Parallel::SyncCache *sync_cache_pre; // per-level cache for predictor sync
Parallel::SyncCache *sync_cache_cor; // per-level cache for corrector sync
Parallel::SyncCache *sync_cache_rp_coarse; // RestrictProlong sync on PatL[lev-1]
Parallel::SyncCache *sync_cache_rp_fine; // RestrictProlong sync on PatL[lev]
monitor *ErrorMonitor, *Psi4Monitor, *BHMonitor, *MAPMonitor; monitor *ErrorMonitor, *Psi4Monitor, *BHMonitor, *MAPMonitor;
monitor *ConVMonitor; monitor *ConVMonitor;
surface_integral *Waveshell; surface_integral *Waveshell;

View File

@@ -161,8 +161,36 @@
chi_rhs = F2o3 *chin1*( alpn1 * trK - div_beta ) !rhs for chi chi_rhs = F2o3 *chin1*( alpn1 * trK - div_beta ) !rhs for chi
call fderivs(ex,dxx,gxxx,gxxy,gxxz,X,Y,Z,SYM ,SYM ,SYM ,Symmetry,Lev)
call fderivs(ex,gxy,gxyx,gxyy,gxyz,X,Y,Z,ANTI,ANTI,SYM ,Symmetry,Lev)
call fderivs(ex,gxz,gxzx,gxzy,gxzz,X,Y,Z,ANTI,SYM ,ANTI,Symmetry,Lev)
call fderivs(ex,dyy,gyyx,gyyy,gyyz,X,Y,Z,SYM ,SYM ,SYM ,Symmetry,Lev)
call fderivs(ex,gyz,gyzx,gyzy,gyzz,X,Y,Z,SYM ,ANTI,ANTI,Symmetry,Lev)
call fderivs(ex,dzz,gzzx,gzzy,gzzz,X,Y,Z,SYM ,SYM ,SYM ,Symmetry,Lev)
gxx_rhs = - TWO * alpn1 * Axx - F2o3 * gxx * div_beta + &
TWO *( gxx * betaxx + gxy * betayx + gxz * betazx)
gyy_rhs = - TWO * alpn1 * Ayy - F2o3 * gyy * div_beta + &
TWO *( gxy * betaxy + gyy * betayy + gyz * betazy)
gzz_rhs = - TWO * alpn1 * Azz - F2o3 * gzz * div_beta + &
TWO *( gxz * betaxz + gyz * betayz + gzz * betazz)
gxy_rhs = - TWO * alpn1 * Axy + F1o3 * gxy * div_beta + &
gxx * betaxy + gxz * betazy + &
gyy * betayx + gyz * betazx &
- gxy * betazz
gyz_rhs = - TWO * alpn1 * Ayz + F1o3 * gyz * div_beta + &
gxy * betaxz + gyy * betayz + &
gxz * betaxy + gzz * betazy &
- gyz * betaxx
gxz_rhs = - TWO * alpn1 * Axz + F1o3 * gxz * div_beta + &
gxx * betaxz + gxy * betayz + &
gyz * betayx + gzz * betazx &
- gxz * betayy !rhs for gij
! invert tilted metric ! invert tilted metric
gupzz = gxx * gyy * gzz + gxy * gyz * gxz + gxz * gxy * gyz - & gupzz = gxx * gyy * gzz + gxy * gyz * gxz + gxz * gxy * gyz - &
@@ -173,12 +201,7 @@
gupyy = ( gxx * gzz - gxz * gxz ) / gupzz gupyy = ( gxx * gzz - gxz * gxz ) / gupzz
gupyz = - ( gxx * gyz - gxy * gxz ) / gupzz gupyz = - ( gxx * gyz - gxy * gxz ) / gupzz
gupzz = ( gxx * gyy - gxy * gxy ) / gupzz gupzz = ( gxx * gyy - gxy * gxy ) / gupzz
call fderivs(ex,dxx,gxxx,gxxy,gxxz,X,Y,Z,SYM ,SYM ,SYM ,Symmetry,Lev)
call fderivs(ex,gxy,gxyx,gxyy,gxyz,X,Y,Z,ANTI,ANTI,SYM ,Symmetry,Lev)
call fderivs(ex,gxz,gxzx,gxzy,gxzz,X,Y,Z,ANTI,SYM ,ANTI,Symmetry,Lev)
call fderivs(ex,dyy,gyyx,gyyy,gyyz,X,Y,Z,SYM ,SYM ,SYM ,Symmetry,Lev)
call fderivs(ex,gyz,gyzx,gyzy,gyzz,X,Y,Z,SYM ,ANTI,ANTI,Symmetry,Lev)
call fderivs(ex,dzz,gzzx,gzzy,gzzz,X,Y,Z,SYM ,SYM ,SYM ,Symmetry,Lev)
if(co == 0)then if(co == 0)then
! Gam^i_Res = Gam^i + gup^ij_,j ! Gam^i_Res = Gam^i + gup^ij_,j
Gmx_Res = Gamx - (gupxx*(gupxx*gxxx+gupxy*gxyx+gupxz*gxzx)& Gmx_Res = Gamx - (gupxx*(gupxx*gxxx+gupxy*gxyx+gupxz*gxzx)&
@@ -922,103 +945,60 @@
SSA(2)=SYM SSA(2)=SYM
SSA(3)=ANTI SSA(3)=ANTI
!!!!!!!!!advection term part !!!!!!!!!advection term + Kreiss-Oliger dissipation (merged for cache efficiency)
! lopsided_kodis shares the symmetry_bd buffer between advection and
! dissipation, eliminating redundant full-grid copies. For metric variables
! gxx/gyy/gzz (=dxx/dyy/dzz+1): kodis stencil coefficients sum to zero,
! so the constant offset has no effect on dissipation.
gxx_rhs = - TWO * alpn1 * Axx - F2o3 * gxx * div_beta + & call lopsided_kodis(ex,X,Y,Z,gxx,gxx_rhs,betax,betay,betaz,Symmetry,SSS,eps)
TWO *( gxx * betaxx + gxy * betayx + gxz * betazx) call lopsided_kodis(ex,X,Y,Z,gxy,gxy_rhs,betax,betay,betaz,Symmetry,AAS,eps)
call lopsided_kodis(ex,X,Y,Z,gxz,gxz_rhs,betax,betay,betaz,Symmetry,ASA,eps)
call lopsided_kodis(ex,X,Y,Z,gyy,gyy_rhs,betax,betay,betaz,Symmetry,SSS,eps)
call lopsided_kodis(ex,X,Y,Z,gyz,gyz_rhs,betax,betay,betaz,Symmetry,SAA,eps)
call lopsided_kodis(ex,X,Y,Z,gzz,gzz_rhs,betax,betay,betaz,Symmetry,SSS,eps)
gyy_rhs = - TWO * alpn1 * Ayy - F2o3 * gyy * div_beta + & call lopsided_kodis(ex,X,Y,Z,Axx,Axx_rhs,betax,betay,betaz,Symmetry,SSS,eps)
TWO *( gxy * betaxy + gyy * betayy + gyz * betazy) call lopsided_kodis(ex,X,Y,Z,Axy,Axy_rhs,betax,betay,betaz,Symmetry,AAS,eps)
call lopsided_kodis(ex,X,Y,Z,Axz,Axz_rhs,betax,betay,betaz,Symmetry,ASA,eps)
call lopsided_kodis(ex,X,Y,Z,Ayy,Ayy_rhs,betax,betay,betaz,Symmetry,SSS,eps)
call lopsided_kodis(ex,X,Y,Z,Ayz,Ayz_rhs,betax,betay,betaz,Symmetry,SAA,eps)
call lopsided_kodis(ex,X,Y,Z,Azz,Azz_rhs,betax,betay,betaz,Symmetry,SSS,eps)
gzz_rhs = - TWO * alpn1 * Azz - F2o3 * gzz * div_beta + & call lopsided_kodis(ex,X,Y,Z,chi,chi_rhs,betax,betay,betaz,Symmetry,SSS,eps)
TWO *( gxz * betaxz + gyz * betayz + gzz * betazz) call lopsided_kodis(ex,X,Y,Z,trK,trK_rhs,betax,betay,betaz,Symmetry,SSS,eps)
gxy_rhs = - TWO * alpn1 * Axy + F1o3 * gxy * div_beta + & call lopsided_kodis(ex,X,Y,Z,Gamx,Gamx_rhs,betax,betay,betaz,Symmetry,ASS,eps)
gxx * betaxy + gxz * betazy + & call lopsided_kodis(ex,X,Y,Z,Gamy,Gamy_rhs,betax,betay,betaz,Symmetry,SAS,eps)
gyy * betayx + gyz * betazx & call lopsided_kodis(ex,X,Y,Z,Gamz,Gamz_rhs,betax,betay,betaz,Symmetry,SSA,eps)
- gxy * betazz
gyz_rhs = - TWO * alpn1 * Ayz + F1o3 * gyz * div_beta + & #if 1
gxy * betaxz + gyy * betayz + & !! bam does not apply dissipation on gauge variables
gxz * betaxy + gzz * betazy & call lopsided_kodis(ex,X,Y,Z,Lap,Lap_rhs,betax,betay,betaz,Symmetry,SSS,eps)
- gyz * betaxx #if (GAUGE == 0 || GAUGE == 1 || GAUGE == 2 || GAUGE == 3 || GAUGE == 4 || GAUGE == 5 || GAUGE == 6 || GAUGE == 7)
call lopsided_kodis(ex,X,Y,Z,betax,betax_rhs,betax,betay,betaz,Symmetry,ASS,eps)
gxz_rhs = - TWO * alpn1 * Axz + F1o3 * gxz * div_beta + & call lopsided_kodis(ex,X,Y,Z,betay,betay_rhs,betax,betay,betaz,Symmetry,SAS,eps)
gxx * betaxz + gxy * betayz + & call lopsided_kodis(ex,X,Y,Z,betaz,betaz_rhs,betax,betay,betaz,Symmetry,SSA,eps)
gyz * betayx + gzz * betazx & #endif
- gxz * betayy !rhs for gij #if (GAUGE == 0 || GAUGE == 2 || GAUGE == 3 || GAUGE == 6 || GAUGE == 7)
call lopsided_kodis(ex,X,Y,Z,dtSfx,dtSfx_rhs,betax,betay,betaz,Symmetry,ASS,eps)
call lopsided_kodis(ex,X,Y,Z,dtSfy,dtSfy_rhs,betax,betay,betaz,Symmetry,SAS,eps)
call lopsided_kodis(ex,X,Y,Z,dtSfz,dtSfz_rhs,betax,betay,betaz,Symmetry,SSA,eps)
#endif
#else
if(eps>0)then ! No dissipation on gauge variables (advection only)
! usual Kreiss-Oliger dissipation
call merge_lopsided_kodis(ex,X,Y,Z,chi,chi_rhs,betax,betay,betaz,Symmetry,SSS,eps)
call merge_lopsided_kodis(ex,X,Y,Z,gxx,gxx_rhs,betax,betay,betaz,Symmetry,SSS,eps)
call merge_lopsided_kodis(ex,X,Y,Z,gxy,gxy_rhs,betax,betay,betaz,Symmetry,AAS,eps)
call merge_lopsided_kodis(ex,X,Y,Z,gxz,gxz_rhs,betax,betay,betaz,Symmetry,ASA,eps)
call merge_lopsided_kodis(ex,X,Y,Z,gyy,gyy_rhs,betax,betay,betaz,Symmetry,SSS,eps)
call merge_lopsided_kodis(ex,X,Y,Z,gyz,gyz_rhs,betax,betay,betaz,Symmetry,SAA,eps)
call merge_lopsided_kodis(ex,X,Y,Z,gzz,gzz_rhs,betax,betay,betaz,Symmetry,SSS,eps)
call merge_lopsided_kodis(ex,X,Y,Z,Axx,Axx_rhs,betax,betay,betaz,Symmetry,SSS,eps)
call merge_lopsided_kodis(ex,X,Y,Z,Axy,Axy_rhs,betax,betay,betaz,Symmetry,AAS,eps)
call merge_lopsided_kodis(ex,X,Y,Z,Axz,Axz_rhs,betax,betay,betaz,Symmetry,ASA,eps)
call merge_lopsided_kodis(ex,X,Y,Z,Ayy,Ayy_rhs,betax,betay,betaz,Symmetry,SSS,eps)
call merge_lopsided_kodis(ex,X,Y,Z,Ayz,Ayz_rhs,betax,betay,betaz,Symmetry,SAA,eps)
call merge_lopsided_kodis(ex,X,Y,Z,Azz,Azz_rhs,betax,betay,betaz,Symmetry,SSS,eps)
call merge_lopsided_kodis(ex,X,Y,Z,chi,chi_rhs,betax,betay,betaz,Symmetry,SSS,eps)
call merge_lopsided_kodis(ex,X,Y,Z,trK,trK_rhs,betax,betay,betaz,Symmetry,SSS,eps)
call merge_lopsided_kodis(ex,X,Y,Z,Gamx,Gamx_rhs,betax,betay,betaz,Symmetry,ASS,eps)
call merge_lopsided_kodis(ex,X,Y,Z,Gamy,Gamy_rhs,betax,betay,betaz,Symmetry,SAS,eps)
call merge_lopsided_kodis(ex,X,Y,Z,Gamz,Gamz_rhs,betax,betay,betaz,Symmetry,SSA,eps)
call merge_lopsided_kodis(ex,X,Y,Z,Lap,Lap_rhs,betax,betay,betaz,Symmetry,SSS,eps)
call merge_lopsided_kodis(ex,X,Y,Z,betax,betax_rhs,betax,betay,betaz,Symmetry,ASS,eps)
call merge_lopsided_kodis(ex,X,Y,Z,betay,betay_rhs,betax,betay,betaz,Symmetry,SAS,eps)
call merge_lopsided_kodis(ex,X,Y,Z,betaz,betaz_rhs,betax,betay,betaz,Symmetry,SSA,eps)
call merge_lopsided_kodis(ex,X,Y,Z,dtSfx,dtSfx_rhs,betax,betay,betaz,Symmetry,ASS,eps)
call merge_lopsided_kodis(ex,X,Y,Z,dtSfy,dtSfy_rhs,betax,betay,betaz,Symmetry,SAS,eps)
call merge_lopsided_kodis(ex,X,Y,Z,dtSfz,dtSfz_rhs,betax,betay,betaz,Symmetry,SSA,eps)
else
call lopsided(ex,X,Y,Z,gxx,gxx_rhs,betax,betay,betaz,Symmetry,SSS)
call lopsided(ex,X,Y,Z,gxy,gxy_rhs,betax,betay,betaz,Symmetry,AAS)
call lopsided(ex,X,Y,Z,gxz,gxz_rhs,betax,betay,betaz,Symmetry,ASA)
call lopsided(ex,X,Y,Z,gyy,gyy_rhs,betax,betay,betaz,Symmetry,SSS)
call lopsided(ex,X,Y,Z,gyz,gyz_rhs,betax,betay,betaz,Symmetry,SAA)
call lopsided(ex,X,Y,Z,gzz,gzz_rhs,betax,betay,betaz,Symmetry,SSS)
call lopsided(ex,X,Y,Z,Axx,Axx_rhs,betax,betay,betaz,Symmetry,SSS)
call lopsided(ex,X,Y,Z,Axy,Axy_rhs,betax,betay,betaz,Symmetry,AAS)
call lopsided(ex,X,Y,Z,Axz,Axz_rhs,betax,betay,betaz,Symmetry,ASA)
call lopsided(ex,X,Y,Z,Ayy,Ayy_rhs,betax,betay,betaz,Symmetry,SSS)
call lopsided(ex,X,Y,Z,Ayz,Ayz_rhs,betax,betay,betaz,Symmetry,SAA)
call lopsided(ex,X,Y,Z,Azz,Azz_rhs,betax,betay,betaz,Symmetry,SSS)
call lopsided(ex,X,Y,Z,chi,chi_rhs,betax,betay,betaz,Symmetry,SSS)
call lopsided(ex,X,Y,Z,trK,trK_rhs,betax,betay,betaz,Symmetry,SSS)
call lopsided(ex,X,Y,Z,Gamx,Gamx_rhs,betax,betay,betaz,Symmetry,ASS)
call lopsided(ex,X,Y,Z,Gamy,Gamy_rhs,betax,betay,betaz,Symmetry,SAS)
call lopsided(ex,X,Y,Z,Gamz,Gamz_rhs,betax,betay,betaz,Symmetry,SSA)
call lopsided(ex,X,Y,Z,Lap,Lap_rhs,betax,betay,betaz,Symmetry,SSS) call lopsided(ex,X,Y,Z,Lap,Lap_rhs,betax,betay,betaz,Symmetry,SSS)
#if (GAUGE == 0 || GAUGE == 1 || GAUGE == 2 || GAUGE == 3 || GAUGE == 4 || GAUGE == 5 || GAUGE == 6 || GAUGE == 7)
call lopsided(ex,X,Y,Z,betax,betax_rhs,betax,betay,betaz,Symmetry,ASS) call lopsided(ex,X,Y,Z,betax,betax_rhs,betax,betay,betaz,Symmetry,ASS)
call lopsided(ex,X,Y,Z,betay,betay_rhs,betax,betay,betaz,Symmetry,SAS) call lopsided(ex,X,Y,Z,betay,betay_rhs,betax,betay,betaz,Symmetry,SAS)
call lopsided(ex,X,Y,Z,betaz,betaz_rhs,betax,betay,betaz,Symmetry,SSA) call lopsided(ex,X,Y,Z,betaz,betaz_rhs,betax,betay,betaz,Symmetry,SSA)
#endif
#if (GAUGE == 0 || GAUGE == 2 || GAUGE == 3 || GAUGE == 6 || GAUGE == 7)
call lopsided(ex,X,Y,Z,dtSfx,dtSfx_rhs,betax,betay,betaz,Symmetry,ASS) call lopsided(ex,X,Y,Z,dtSfx,dtSfx_rhs,betax,betay,betaz,Symmetry,ASS)
call lopsided(ex,X,Y,Z,dtSfy,dtSfy_rhs,betax,betay,betaz,Symmetry,SAS) call lopsided(ex,X,Y,Z,dtSfy,dtSfy_rhs,betax,betay,betaz,Symmetry,SAS)
call lopsided(ex,X,Y,Z,dtSfz,dtSfz_rhs,betax,betay,betaz,Symmetry,SSA) call lopsided(ex,X,Y,Z,dtSfz,dtSfz_rhs,betax,betay,betaz,Symmetry,SSA)
#endif
#endif
endif
if(co == 0)then if(co == 0)then
! ham_Res = trR + 2/3 * K^2 - A_ij * A^ij - 16 * PI * rho ! ham_Res = trR + 2/3 * K^2 - A_ij * A^ij - 16 * PI * rho
@@ -1163,265 +1143,3 @@ endif
return return
end function compute_rhs_bssn end function compute_rhs_bssn
subroutine merge_lopsided_kodis(ex,X,Y,Z,f,f_rhs,Sfx,Sfy,Sfz,Symmetry,SoA,eps)
implicit none
!~~~~~~> Input parameters:
integer, intent(in) :: ex(1:3),Symmetry
real*8, intent(in) :: X(1:ex(1)),Y(1:ex(2)),Z(1:ex(3))
real*8,dimension(ex(1),ex(2),ex(3)),intent(in) :: f,Sfx,Sfy,Sfz
real*8,dimension(ex(1),ex(2),ex(3)),intent(inout):: f_rhs
real*8,dimension(3),intent(in) ::SoA
!~~~~~~> local variables:
! note index -2,-1,0, so we have 3 extra points
real*8,dimension(-2:ex(1),-2:ex(2),-2:ex(3)) :: fh
integer :: imin_lopsided,jmin_lopsided,kmin_lopsided,imin_kodis,jmin_kodis,kmin_kodis,imax,jmax,kmax,i,j,k
real*8 :: dX,dY,dZ
real*8 :: d12dx,d12dy,d12dz,d2dx,d2dy,d2dz
real*8, parameter :: ZEO=0.d0,ONE=1.d0, F3=3.d0
real*8, parameter :: TWO=2.d0,F6=6.0d0,F18=1.8d1
real*8, parameter :: F12=1.2d1, F10=1.d1,EIT=8.d0
integer, parameter :: NO_SYMM = 0, EQ_SYMM = 1, OCTANT = 2
real*8, parameter :: SIX=6.d0,FIT=1.5d1,TWT=2.d1
real*8,parameter::cof=6.4d1 ! 2^6
real*8,intent(in) :: eps
dX = X(2)-X(1)
dY = Y(2)-Y(1)
dZ = Z(2)-Z(1)
d12dx = ONE/F12/dX
d12dy = ONE/F12/dY
d12dz = ONE/F12/dZ
d2dx = ONE/TWO/dX
d2dy = ONE/TWO/dY
d2dz = ONE/TWO/dZ
imax = ex(1)
jmax = ex(2)
kmax = ex(3)
imin_lopsided = 1
jmin_lopsided = 1
kmin_lopsided = 1
if(Symmetry > NO_SYMM .and. dabs(Z(1)) < dZ) kmin_lopsided = -2
if(Symmetry > EQ_SYMM .and. dabs(X(1)) < dX) imin_lopsided = -2
if(Symmetry > EQ_SYMM .and. dabs(Y(1)) < dY) jmin_lopsided = -2
imin_kodis = 1
jmin_kodis = 1
kmin_kodis = 1
if(Symmetry > NO_SYMM .and. dabs(Z(1)) < dZ) kmin_kodis = -2
if(Symmetry == OCTANT .and. dabs(X(1)) < dX) imin_kodis = -2
if(Symmetry == OCTANT .and. dabs(Y(1)) < dY) jmin_kodis = -2
call symmetry_bd(3,ex,f,fh,SoA)
! upper bound set ex-1 only for efficiency,
! the loop body will set ex 0 also
do k=1,ex(3)-1
do j=1,ex(2)-1
do i=1,ex(1)-1
!! new code, 2012dec27, based on bam
! x direction
if(Sfx(i,j,k) > ZEO)then
if(i+3 <= imax)then
! v
! D f = ------[ - 3f - 10f + 18f - 6f + f ]
! i 12dx i-v i i+v i+2v i+3v
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfx(i,j,k)*d12dx*(-F3*fh(i-1,j,k)-F10*fh(i,j,k)+F18*fh(i+1,j,k) &
-F6*fh(i+2,j,k)+ fh(i+3,j,k))
elseif(i+2 <= imax)then
!
! f(i-2) - 8 f(i-1) + 8 f(i+1) - f(i+2)
! fx(i) = ---------------------------------------------
! 12 dx
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfx(i,j,k)*d12dx*(fh(i-2,j,k)-EIT*fh(i-1,j,k)+EIT*fh(i+1,j,k)-fh(i+2,j,k))
elseif(i+1 <= imax)then
! v
! D f = ------[ 3f + 10f - 18f + 6f - f ]
! i 12dx i+v i i-v i-2v i-3v
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfx(i,j,k)*d12dx*(-F3*fh(i+1,j,k)-F10*fh(i,j,k)+F18*fh(i-1,j,k) &
-F6*fh(i-2,j,k)+ fh(i-3,j,k))
! set imax and imin_lopsided 0
endif
elseif(Sfx(i,j,k) < ZEO)then
if(i-3 >= imin_lopsided)then
! v
! D f = ------[ - 3f - 10f + 18f - 6f + f ]
! i 12dx i-v i i+v i+2v i+3v
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfx(i,j,k)*d12dx*(-F3*fh(i+1,j,k)-F10*fh(i,j,k)+F18*fh(i-1,j,k) &
-F6*fh(i-2,j,k)+ fh(i-3,j,k))
elseif(i-2 >= imin_lopsided)then
!
! f(i-2) - 8 f(i-1) + 8 f(i+1) - f(i+2)
! fx(i) = ---------------------------------------------
! 12 dx
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfx(i,j,k)*d12dx*(fh(i-2,j,k)-EIT*fh(i-1,j,k)+EIT*fh(i+1,j,k)-fh(i+2,j,k))
elseif(i-1 >= imin_lopsided)then
! v
! D f = ------[ 3f + 10f - 18f + 6f - f ]
! i 12dx i+v i i-v i-2v i-3v
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfx(i,j,k)*d12dx*(-F3*fh(i-1,j,k)-F10*fh(i,j,k)+F18*fh(i+1,j,k) &
-F6*fh(i+2,j,k)+ fh(i+3,j,k))
! set imax and imin_lopsided 0
endif
endif
! y direction
if(Sfy(i,j,k) > ZEO)then
if(j+3 <= jmax)then
! v
! D f = ------[ - 3f - 10f + 18f - 6f + f ]
! i 12dx i-v i i+v i+2v i+3v
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfy(i,j,k)*d12dy*(-F3*fh(i,j-1,k)-F10*fh(i,j,k)+F18*fh(i,j+1,k) &
-F6*fh(i,j+2,k)+ fh(i,j+3,k))
elseif(j+2 <= jmax)then
!
! f(i-2) - 8 f(i-1) + 8 f(i+1) - f(i+2)
! fx(i) = ---------------------------------------------
! 12 dx
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfy(i,j,k)*d12dy*(fh(i,j-2,k)-EIT*fh(i,j-1,k)+EIT*fh(i,j+1,k)-fh(i,j+2,k))
elseif(j+1 <= jmax)then
! v
! D f = ------[ 3f + 10f - 18f + 6f - f ]
! i 12dx i+v i i-v i-2v i-3v
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfy(i,j,k)*d12dy*(-F3*fh(i,j+1,k)-F10*fh(i,j,k)+F18*fh(i,j-1,k) &
-F6*fh(i,j-2,k)+ fh(i,j-3,k))
! set imax and imin_lopsided 0
endif
elseif(Sfy(i,j,k) < ZEO)then
if(j-3 >= jmin_lopsided)then
! v
! D f = ------[ - 3f - 10f + 18f - 6f + f ]
! i 12dx i-v i i+v i+2v i+3v
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfy(i,j,k)*d12dy*(-F3*fh(i,j+1,k)-F10*fh(i,j,k)+F18*fh(i,j-1,k) &
-F6*fh(i,j-2,k)+ fh(i,j-3,k))
elseif(j-2 >= jmin_lopsided)then
!
! f(i-2) - 8 f(i-1) + 8 f(i+1) - f(i+2)
! fx(i) = ---------------------------------------------
! 12 dx
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfy(i,j,k)*d12dy*(fh(i,j-2,k)-EIT*fh(i,j-1,k)+EIT*fh(i,j+1,k)-fh(i,j+2,k))
elseif(j-1 >= jmin_lopsided)then
! v
! D f = ------[ 3f + 10f - 18f + 6f - f ]
! i 12dx i+v i i-v i-2v i-3v
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfy(i,j,k)*d12dy*(-F3*fh(i,j-1,k)-F10*fh(i,j,k)+F18*fh(i,j+1,k) &
-F6*fh(i,j+2,k)+ fh(i,j+3,k))
! set jmax and jmin_lopsided 0
endif
endif
! z direction
if(Sfz(i,j,k) > ZEO)then
if(k+3 <= kmax)then
! v
! D f = ------[ - 3f - 10f + 18f - 6f + f ]
! i 12dx i-v i i+v i+2v i+3v
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfz(i,j,k)*d12dz*(-F3*fh(i,j,k-1)-F10*fh(i,j,k)+F18*fh(i,j,k+1) &
-F6*fh(i,j,k+2)+ fh(i,j,k+3))
elseif(k+2 <= kmax)then
!
! f(i-2) - 8 f(i-1) + 8 f(i+1) - f(i+2)
! fx(i) = ---------------------------------------------
! 12 dx
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfz(i,j,k)*d12dz*(fh(i,j,k-2)-EIT*fh(i,j,k-1)+EIT*fh(i,j,k+1)-fh(i,j,k+2))
elseif(k+1 <= kmax)then
! v
! D f = ------[ 3f + 10f - 18f + 6f - f ]
! i 12dx i+v i i-v i-2v i-3v
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfz(i,j,k)*d12dz*(-F3*fh(i,j,k+1)-F10*fh(i,j,k)+F18*fh(i,j,k-1) &
-F6*fh(i,j,k-2)+ fh(i,j,k-3))
! set imax and imin_lopsided 0
endif
elseif(Sfz(i,j,k) < ZEO)then
if(k-3 >= kmin_lopsided)then
! v
! D f = ------[ - 3f - 10f + 18f - 6f + f ]
! i 12dx i-v i i+v i+2v i+3v
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfz(i,j,k)*d12dz*(-F3*fh(i,j,k+1)-F10*fh(i,j,k)+F18*fh(i,j,k-1) &
-F6*fh(i,j,k-2)+ fh(i,j,k-3))
elseif(k-2 >= kmin_lopsided)then
!
! f(i-2) - 8 f(i-1) + 8 f(i+1) - f(i+2)
! fx(i) = ---------------------------------------------
! 12 dx
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfz(i,j,k)*d12dz*(fh(i,j,k-2)-EIT*fh(i,j,k-1)+EIT*fh(i,j,k+1)-fh(i,j,k+2))
elseif(k-1 >= kmin_lopsided)then
! v
! D f = ------[ 3f + 10f - 18f + 6f - f ]
! i 12dx i+v i i-v i-2v i-3v
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfz(i,j,k)*d12dz*(-F3*fh(i,j,k-1)-F10*fh(i,j,k)+F18*fh(i,j,k+1) &
-F6*fh(i,j,k+2)+ fh(i,j,k+3))
! set kmax and kmin_lopsided 0
endif
endif
if(i-3 >= imin_kodis .and. i+3 <= imax .and. &
j-3 >= jmin_kodis .and. j+3 <= jmax .and. &
k-3 >= kmin_kodis .and. k+3 <= kmax) then
! calculation order if important ?
f_rhs(i,j,k) = f_rhs(i,j,k) + eps/cof *( ( &
(fh(i-3,j,k)+fh(i+3,j,k)) - &
SIX*(fh(i-2,j,k)+fh(i+2,j,k)) + &
FIT*(fh(i-1,j,k)+fh(i+1,j,k)) - &
TWT* fh(i,j,k) )/dX + &
( &
(fh(i,j-3,k)+fh(i,j+3,k)) - &
SIX*(fh(i,j-2,k)+fh(i,j+2,k)) + &
FIT*(fh(i,j-1,k)+fh(i,j+1,k)) - &
TWT* fh(i,j,k) )/dY + &
( &
(fh(i,j,k-3)+fh(i,j,k+3)) - &
SIX*(fh(i,j,k-2)+fh(i,j,k+2)) + &
FIT*(fh(i,j,k-1)+fh(i,j,k+1)) - &
TWT* fh(i,j,k) )/dZ )
endif
enddo
enddo
enddo
return
end subroutine merge_lopsided_kodis

View File

@@ -1000,7 +1000,86 @@
do k=1,ex(3)-1 do k=1,ex(3)-1
do j=1,ex(2)-1 do j=1,ex(2)-1
do i=1,ex(1)-1 do i=1,ex(1)-1
#if 0
! x direction
if(i+2 <= imax .and. i-2 >= imin)then
!
! f(i-2) - 8 f(i-1) + 8 f(i+1) - f(i+2)
! fx(i) = ---------------------------------------------
! 12 dx
fx(i,j,k)=d12dx*(fh(i-2,j,k)-EIT*fh(i-1,j,k)+EIT*fh(i+1,j,k)-fh(i+2,j,k))
elseif(i+1 <= imax .and. i-1 >= imin)then
!
! - f(i-1) + f(i+1)
! fx(i) = --------------------------------
! 2 dx
fx(i,j,k)=d2dx*(-fh(i-1,j,k)+fh(i+1,j,k))
! set imax and imin 0
endif
! y direction
if(j+2 <= jmax .and. j-2 >= jmin)then
fy(i,j,k)=d12dy*(fh(i,j-2,k)-EIT*fh(i,j-1,k)+EIT*fh(i,j+1,k)-fh(i,j+2,k))
elseif(j+1 <= jmax .and. j-1 >= jmin)then
fy(i,j,k)=d2dy*(-fh(i,j-1,k)+fh(i,j+1,k))
! set jmax and jmin 0
endif
! z direction
if(k+2 <= kmax .and. k-2 >= kmin)then
fz(i,j,k)=d12dz*(fh(i,j,k-2)-EIT*fh(i,j,k-1)+EIT*fh(i,j,k+1)-fh(i,j,k+2))
elseif(k+1 <= kmax .and. k-1 >= kmin)then
fz(i,j,k)=d2dz*(-fh(i,j,k-1)+fh(i,j,k+1))
! set kmax and kmin 0
endif
#elif 0
! x direction
if(i+2 <= imax .and. i-2 >= imin)then
!
! f(i-2) - 8 f(i-1) + 8 f(i+1) - f(i+2)
! fx(i) = ---------------------------------------------
! 12 dx
fx(i,j,k)=d12dx*(fh(i-2,j,k)-EIT*fh(i-1,j,k)+EIT*fh(i+1,j,k)-fh(i+2,j,k))
elseif(i+3 <= imax .and. i-1 >= imin)then
fx(i,j,k)=d12dx*(-3.d0*fh(i-1,j,k)-1.d1*fh(i,j,k)+1.8d1*fh(i+1,j,k)-6.d0*fh(i+2,j,k)+fh(i+3,j,k))
elseif(i+1 <= imax .and. i-3 >= imin)then
fx(i,j,k)=d12dx*( 3.d0*fh(i+1,j,k)+1.d1*fh(i,j,k)-1.8d1*fh(i-1,j,k)+6.d0*fh(i-2,j,k)-fh(i-3,j,k))
! set imax and imin 0
endif
! y direction
if(j+2 <= jmax .and. j-2 >= jmin)then
fy(i,j,k)=d12dy*(fh(i,j-2,k)-EIT*fh(i,j-1,k)+EIT*fh(i,j+1,k)-fh(i,j+2,k))
elseif(j+3 <= jmax .and. j-1 >= jmin)then
fy(i,j,k)=d12dy*(-3.d0*fh(i,j-1,k)-1.d1*fh(i,j,k)+1.8d1*fh(i,j+1,k)-6.d0*fh(i,j+2,k)+fh(i,j+3,k))
elseif(j+1 <= jmax .and. j-3 >= jmin)then
fy(i,j,k)=d12dy*( 3.d0*fh(i,j+1,k)+1.d1*fh(i,j,k)-1.8d1*fh(i,j-1,k)+6.d0*fh(i,j-2,k)-fh(i,j-3,k))
! set jmax and jmin 0
endif
! z direction
if(k+2 <= kmax .and. k-2 >= kmin)then
fz(i,j,k)=d12dz*(fh(i,j,k-2)-EIT*fh(i,j,k-1)+EIT*fh(i,j,k+1)-fh(i,j,k+2))
elseif(k+3 <= kmax .and. k-1 >= kmin)then
fz(i,j,k)=d12dz*(-3.d0*fh(i,j,k-1)-1.d1*fh(i,j,k)+1.8d1*fh(i,j,k+1)-6.d0*fh(i,j,k+2)+fh(i,j,k+3))
elseif(k+1 <= kmax .and. k-3 >= kmin)then
fz(i,j,k)=d12dz*( 3.d0*fh(i,j,k+1)+1.d1*fh(i,j,k)-1.8d1*fh(i,j,k-1)+6.d0*fh(i,j,k-2)-fh(i,j,k-3))
! set kmax and kmin 0
endif
#else
! for bam comparison ! for bam comparison
if(i+2 <= imax .and. i-2 >= imin .and. & if(i+2 <= imax .and. i-2 >= imin .and. &
j+2 <= jmax .and. j-2 >= jmin .and. & j+2 <= jmax .and. j-2 >= jmin .and. &
@@ -1015,7 +1094,7 @@
fy(i,j,k)=d2dy*(-fh(i,j-1,k)+fh(i,j+1,k)) fy(i,j,k)=d2dy*(-fh(i,j-1,k)+fh(i,j+1,k))
fz(i,j,k)=d2dz*(-fh(i,j,k-1)+fh(i,j,k+1)) fz(i,j,k)=d2dz*(-fh(i,j,k-1)+fh(i,j,k+1))
endif endif
#endif
enddo enddo
enddo enddo
enddo enddo
@@ -1325,7 +1404,85 @@
do k=1,ex(3)-1 do k=1,ex(3)-1
do j=1,ex(2)-1 do j=1,ex(2)-1
do i=1,ex(1)-1 do i=1,ex(1)-1
#if 0
!~~~~~~ fxx
if(i+2 <= imax .and. i-2 >= imin)then
!
! - f(i-2) + 16 f(i-1) - 30 f(i) + 16 f(i+1) - f(i+2)
! fxx(i) = ----------------------------------------------------------
! 12 dx^2
fxx(i,j,k) = Fdxdx*(-fh(i-2,j,k)+F16*fh(i-1,j,k)-F30*fh(i,j,k) &
-fh(i+2,j,k)+F16*fh(i+1,j,k) )
elseif(i+1 <= imax .and. i-1 >= imin)then
!
! f(i-1) - 2 f(i) + f(i+1)
! fxx(i) = --------------------------------
! dx^2
fxx(i,j,k) = Sdxdx*(fh(i-1,j,k)-TWO*fh(i,j,k) &
+fh(i+1,j,k) )
endif
!~~~~~~ fyy
if(j+2 <= jmax .and. j-2 >= jmin)then
fyy(i,j,k) = Fdydy*(-fh(i,j-2,k)+F16*fh(i,j-1,k)-F30*fh(i,j,k) &
-fh(i,j+2,k)+F16*fh(i,j+1,k) )
elseif(j+1 <= jmax .and. j-1 >= jmin)then
fyy(i,j,k) = Sdydy*(fh(i,j-1,k)-TWO*fh(i,j,k) &
+fh(i,j+1,k) )
endif
!~~~~~~ fzz
if(k+2 <= kmax .and. k-2 >= kmin)then
fzz(i,j,k) = Fdzdz*(-fh(i,j,k-2)+F16*fh(i,j,k-1)-F30*fh(i,j,k) &
-fh(i,j,k+2)+F16*fh(i,j,k+1) )
elseif(k+1 <= kmax .and. k-1 >= kmin)then
fzz(i,j,k) = Sdzdz*(fh(i,j,k-1)-TWO*fh(i,j,k) &
+fh(i,j,k+1) )
endif
!~~~~~~ fxy
if(i+2 <= imax .and. i-2 >= imin .and. j+2 <= jmax .and. j-2 >= jmin)then
!
! ( f(i-2,j-2) - 8 f(i-1,j-2) + 8 f(i+1,j-2) - f(i+2,j-2) )
! - 8 ( f(i-2,j-1) - 8 f(i-1,j-1) + 8 f(i+1,j-1) - f(i+2,j-1) )
! + 8 ( f(i-2,j+1) - 8 f(i-1,j+1) + 8 f(i+1,j+1) - f(i+2,j+1) )
! - ( f(i-2,j+2) - 8 f(i-1,j+2) + 8 f(i+1,j+2) - f(i+2,j+2) )
! fxy(i,j) = ----------------------------------------------------------------
! 144 dx dy
fxy(i,j,k) = Fdxdy*( (fh(i-2,j-2,k)-F8*fh(i-1,j-2,k)+F8*fh(i+1,j-2,k)-fh(i+2,j-2,k)) &
-F8 *(fh(i-2,j-1,k)-F8*fh(i-1,j-1,k)+F8*fh(i+1,j-1,k)-fh(i+2,j-1,k)) &
+F8 *(fh(i-2,j+1,k)-F8*fh(i-1,j+1,k)+F8*fh(i+1,j+1,k)-fh(i+2,j+1,k)) &
- (fh(i-2,j+2,k)-F8*fh(i-1,j+2,k)+F8*fh(i+1,j+2,k)-fh(i+2,j+2,k)))
elseif(i+1 <= imax .and. i-1 >= imin .and. j+1 <= jmax .and. j-1 >= jmin)then
! f(i-1,j-1) - f(i+1,j-1) - f(i-1,j+1) + f(i+1,j+1)
! fxy(i,j) = -----------------------------------------------------------
! 4 dx dy
fxy(i,j,k) = Sdxdy*(fh(i-1,j-1,k)-fh(i+1,j-1,k)-fh(i-1,j+1,k)+fh(i+1,j+1,k))
endif
!~~~~~~ fxz
if(i+2 <= imax .and. i-2 >= imin .and. k+2 <= kmax .and. k-2 >= kmin)then
fxz(i,j,k) = Fdxdz*( (fh(i-2,j,k-2)-F8*fh(i-1,j,k-2)+F8*fh(i+1,j,k-2)-fh(i+2,j,k-2)) &
-F8 *(fh(i-2,j,k-1)-F8*fh(i-1,j,k-1)+F8*fh(i+1,j,k-1)-fh(i+2,j,k-1)) &
+F8 *(fh(i-2,j,k+1)-F8*fh(i-1,j,k+1)+F8*fh(i+1,j,k+1)-fh(i+2,j,k+1)) &
- (fh(i-2,j,k+2)-F8*fh(i-1,j,k+2)+F8*fh(i+1,j,k+2)-fh(i+2,j,k+2)))
elseif(i+1 <= imax .and. i-1 >= imin .and. k+1 <= kmax .and. k-1 >= kmin)then
fxz(i,j,k) = Sdxdz*(fh(i-1,j,k-1)-fh(i+1,j,k-1)-fh(i-1,j,k+1)+fh(i+1,j,k+1))
endif
!~~~~~~ fyz
if(j+2 <= jmax .and. j-2 >= jmin .and. k+2 <= kmax .and. k-2 >= kmin)then
fyz(i,j,k) = Fdydz*( (fh(i,j-2,k-2)-F8*fh(i,j-1,k-2)+F8*fh(i,j+1,k-2)-fh(i,j+2,k-2)) &
-F8 *(fh(i,j-2,k-1)-F8*fh(i,j-1,k-1)+F8*fh(i,j+1,k-1)-fh(i,j+2,k-1)) &
+F8 *(fh(i,j-2,k+1)-F8*fh(i,j-1,k+1)+F8*fh(i,j+1,k+1)-fh(i,j+2,k+1)) &
- (fh(i,j-2,k+2)-F8*fh(i,j-1,k+2)+F8*fh(i,j+1,k+2)-fh(i,j+2,k+2)))
elseif(j+1 <= jmax .and. j-1 >= jmin .and. k+1 <= kmax .and. k-1 >= kmin)then
fyz(i,j,k) = Sdydz*(fh(i,j-1,k-1)-fh(i,j+1,k-1)-fh(i,j-1,k+1)+fh(i,j+1,k+1))
endif
#else
! for bam comparison ! for bam comparison
if(i+2 <= imax .and. i-2 >= imin .and. & if(i+2 <= imax .and. i-2 >= imin .and. &
j+2 <= jmax .and. j-2 >= jmin .and. & j+2 <= jmax .and. j-2 >= jmin .and. &
@@ -1361,7 +1518,7 @@
fxz(i,j,k) = Sdxdz*(fh(i-1,j,k-1)-fh(i+1,j,k-1)-fh(i-1,j,k+1)+fh(i+1,j,k+1)) fxz(i,j,k) = Sdxdz*(fh(i-1,j,k-1)-fh(i+1,j,k-1)-fh(i-1,j,k+1)+fh(i+1,j,k+1))
fyz(i,j,k) = Sdydz*(fh(i,j-1,k-1)-fh(i,j+1,k-1)-fh(i,j-1,k+1)+fh(i,j+1,k+1)) fyz(i,j,k) = Sdydz*(fh(i,j-1,k-1)-fh(i,j+1,k-1)-fh(i,j-1,k+1)+fh(i,j+1,k+1))
endif endif
#endif
enddo enddo
enddo enddo
enddo enddo

View File

@@ -326,8 +326,7 @@ subroutine symmetry_bd(ord,extc,func,funcc,SoA)
funcc(1:extc(1),1:extc(2),1:extc(3)) = func funcc(1:extc(1),1:extc(2),1:extc(3)) = func
do i=0,ord-1 do i=0,ord-1
funcc(-i,1:extc(2),1:extc(3)) = funcc(i+2,1:extc(2),1:extc(3))*SoA(1)
funcc(-i,1:extc(2),1:extc(3)) = funcc(i+2,1:extc(2),1:extc(3))*SoA(1)
enddo enddo
do i=0,ord-1 do i=0,ord-1
funcc(:,-i,1:extc(3)) = funcc(:,i+2,1:extc(3))*SoA(2) funcc(:,-i,1:extc(3)) = funcc(:,i+2,1:extc(3))*SoA(2)

View File

@@ -6,6 +6,101 @@
! Vertex or Cell is distinguished in routine symmetry_bd which locates in ! Vertex or Cell is distinguished in routine symmetry_bd which locates in
! file "fmisc.f90" ! file "fmisc.f90"
#if (ghost_width == 2)
! second order code
!------------------------------------------------------------------------------------------------------------------------------
!usual type Kreiss-Oliger type numerical dissipation
!We support cell center only
! (D_+D_-)^2 =
! f(i-2) - 4 f(i-1) + 6 f(i) - 4 f(i+1) + f(i+2)
! ------------------------------------------------------
! dx^4
!------------------------------------------------------------------------------------------------------------------------------
! do not add dissipation near boundary
subroutine kodis(ex,X,Y,Z,f,f_rhs,SoA,Symmetry,eps)
implicit none
! argument variables
integer,intent(in) :: Symmetry
integer,dimension(3),intent(in)::ex
real*8, dimension(1:3), intent(in) :: SoA
double precision,intent(in),dimension(ex(1))::X
double precision,intent(in),dimension(ex(2))::Y
double precision,intent(in),dimension(ex(3))::Z
double precision,intent(in),dimension(ex(1),ex(2),ex(3))::f
double precision,intent(inout),dimension(ex(1),ex(2),ex(3))::f_rhs
real*8,intent(in) :: eps
!~~~~~~ other variables
real*8 :: dX,dY,dZ
real*8,dimension(-1:ex(1),-1:ex(2),-1:ex(3)) :: fh
integer :: imin,jmin,kmin,imax,jmax,kmax
integer, parameter :: NO_SYMM = 0, EQ_SYMM = 1, OCTANT = 2
real*8,parameter :: cof = 1.6d1 ! 2^4
real*8, parameter :: F4=4.d0,F6=6.d0
integer::i,j,k
dX = X(2)-X(1)
dY = Y(2)-Y(1)
dZ = Z(2)-Z(1)
imax = ex(1)
jmax = ex(2)
kmax = ex(3)
imin = 1
jmin = 1
kmin = 1
if(Symmetry > NO_SYMM .and. dabs(Z(1)) < dZ) kmin = -1
if(Symmetry > EQ_SYMM .and. dabs(X(1)) < dX) imin = -1
if(Symmetry > EQ_SYMM .and. dabs(Y(1)) < dY) jmin = -1
call symmetry_bd(2,ex,f,fh,SoA)
! f(i-2) - 4 f(i-1) + 6 f(i) - 4 f(i+1) + f(i+2)
! ------------------------------------------------------
! dx^4
! note the sign (-1)^r-1, now r=2
do k=1,ex(3)
do j=1,ex(2)
do i=1,ex(1)
if(i-2 >= imin .and. i+2 <= imax .and. &
j-2 >= jmin .and. j+2 <= jmax .and. &
k-2 >= kmin .and. k+2 <= kmax) then
! x direction
f_rhs(i,j,k) = f_rhs(i,j,k) - eps/dX/cof * ( &
(fh(i-2,j,k)+fh(i+2,j,k)) &
- F4 * (fh(i-1,j,k)+fh(i+1,j,k)) &
+ F6 * fh(i,j,k) )
! y direction
f_rhs(i,j,k) = f_rhs(i,j,k) - eps/dY/cof * ( &
(fh(i,j-2,k)+fh(i,j+2,k)) &
- F4 * (fh(i,j-1,k)+fh(i,j+1,k)) &
+ F6 * fh(i,j,k) )
! z direction
f_rhs(i,j,k) = f_rhs(i,j,k) - eps/dZ/cof * ( &
(fh(i,j,k-2)+fh(i,j,k+2)) &
- F4 * (fh(i,j,k-1)+fh(i,j,k+1)) &
+ F6 * fh(i,j,k) )
endif
enddo
enddo
enddo
return
end subroutine kodis
#elif (ghost_width == 3)
! fourth order code ! fourth order code
!--------------------------------------------------------------------------------------------- !---------------------------------------------------------------------------------------------
@@ -61,7 +156,7 @@ integer, parameter :: NO_SYMM=0, OCTANT=2
if(Symmetry > NO_SYMM .and. dabs(Z(1)) < dZ) kmin = -2 if(Symmetry > NO_SYMM .and. dabs(Z(1)) < dZ) kmin = -2
if(Symmetry == OCTANT .and. dabs(X(1)) < dX) imin = -2 if(Symmetry == OCTANT .and. dabs(X(1)) < dX) imin = -2
if(Symmetry == OCTANT .and. dabs(Y(1)) < dY) jmin = -2 if(Symmetry == OCTANT .and. dabs(Y(1)) < dY) jmin = -2
!print*,'imin,jmin,kmin=',imin,jmin,kmin
call symmetry_bd(3,ex,f,fh,SoA) call symmetry_bd(3,ex,f,fh,SoA)
do k=1,ex(3) do k=1,ex(3)
@@ -71,7 +166,28 @@ integer, parameter :: NO_SYMM=0, OCTANT=2
if(i-3 >= imin .and. i+3 <= imax .and. & if(i-3 >= imin .and. i+3 <= imax .and. &
j-3 >= jmin .and. j+3 <= jmax .and. & j-3 >= jmin .and. j+3 <= jmax .and. &
k-3 >= kmin .and. k+3 <= kmax) then k-3 >= kmin .and. k+3 <= kmax) then
#if 0
! x direction
f_rhs(i,j,k) = f_rhs(i,j,k) + eps/dX/cof * ( &
(fh(i-3,j,k)+fh(i+3,j,k)) - &
SIX*(fh(i-2,j,k)+fh(i+2,j,k)) + &
FIT*(fh(i-1,j,k)+fh(i+1,j,k)) - &
TWT* fh(i,j,k) )
! y direction
f_rhs(i,j,k) = f_rhs(i,j,k) + eps/dY/cof * ( &
(fh(i,j-3,k)+fh(i,j+3,k)) - &
SIX*(fh(i,j-2,k)+fh(i,j+2,k)) + &
FIT*(fh(i,j-1,k)+fh(i,j+1,k)) - &
TWT* fh(i,j,k) )
! z direction
f_rhs(i,j,k) = f_rhs(i,j,k) + eps/dZ/cof * ( &
(fh(i,j,k-3)+fh(i,j,k+3)) - &
SIX*(fh(i,j,k-2)+fh(i,j,k+2)) + &
FIT*(fh(i,j,k-1)+fh(i,j,k+1)) - &
TWT* fh(i,j,k) )
#else
! calculation order if important ? ! calculation order if important ?
f_rhs(i,j,k) = f_rhs(i,j,k) + eps/cof *( ( & f_rhs(i,j,k) = f_rhs(i,j,k) + eps/cof *( ( &
(fh(i-3,j,k)+fh(i+3,j,k)) - & (fh(i-3,j,k)+fh(i+3,j,k)) - &
@@ -88,7 +204,7 @@ integer, parameter :: NO_SYMM=0, OCTANT=2
SIX*(fh(i,j,k-2)+fh(i,j,k+2)) + & SIX*(fh(i,j,k-2)+fh(i,j,k+2)) + &
FIT*(fh(i,j,k-1)+fh(i,j,k+1)) - & FIT*(fh(i,j,k-1)+fh(i,j,k+1)) - &
TWT* fh(i,j,k) )/dZ ) TWT* fh(i,j,k) )/dZ )
#endif
endif endif
enddo enddo
@@ -99,6 +215,218 @@ integer, parameter :: NO_SYMM=0, OCTANT=2
end subroutine kodis end subroutine kodis
#elif (ghost_width == 4)
! sixth order code
!------------------------------------------------------------------------------------------------------------------------------
!usual type Kreiss-Oliger type numerical dissipation
!We support cell center only
! (D_+D_-)^4 =
! f(i-4) - 8 f(i-3) + 28 f(i-2) - 56 f(i-1) + 70 f(i) - 56 f(i+1) + 28 f(i+2) - 8 f(i+3) + f(i+4)
! ----------------------------------------------------------------------------------------------------------
! dx^8
!------------------------------------------------------------------------------------------------------------------------------
! do not add dissipation near boundary
subroutine kodis(ex,X,Y,Z,f,f_rhs,SoA,Symmetry,eps)
implicit none
! argument variables
integer,intent(in) :: Symmetry
integer,dimension(3),intent(in)::ex
real*8, dimension(1:3), intent(in) :: SoA
double precision,intent(in),dimension(ex(1))::X
double precision,intent(in),dimension(ex(2))::Y
double precision,intent(in),dimension(ex(3))::Z
double precision,intent(in),dimension(ex(1),ex(2),ex(3))::f
double precision,intent(inout),dimension(ex(1),ex(2),ex(3))::f_rhs
real*8,intent(in) :: eps
!~~~~~~ other variables
real*8 :: dX,dY,dZ
real*8,dimension(-3:ex(1),-3:ex(2),-3:ex(3)) :: fh
integer :: imin,jmin,kmin,imax,jmax,kmax
integer, parameter :: NO_SYMM = 0, EQ_SYMM = 1, OCTANT = 2
real*8,parameter :: cof = 2.56d2 ! 2^8
real*8, parameter :: F8=8.d0,F28=2.8d1,F56=5.6d1,F70=7.d1
integer::i,j,k
dX = X(2)-X(1)
dY = Y(2)-Y(1)
dZ = Z(2)-Z(1)
imax = ex(1)
jmax = ex(2)
kmax = ex(3)
imin = 1
jmin = 1
kmin = 1
if(Symmetry > NO_SYMM .and. dabs(Z(1)) < dZ) kmin = -3
if(Symmetry > EQ_SYMM .and. dabs(X(1)) < dX) imin = -3
if(Symmetry > EQ_SYMM .and. dabs(Y(1)) < dY) jmin = -3
call symmetry_bd(4,ex,f,fh,SoA)
! f(i-4) - 8 f(i-3) + 28 f(i-2) - 56 f(i-1) + 70 f(i) - 56 f(i+1) + 28 f(i+2) - 8 f(i+3) + f(i+4)
! ----------------------------------------------------------------------------------------------------------
! dx^8
! note the sign (-1)^r-1, now r=4
do k=1,ex(3)
do j=1,ex(2)
do i=1,ex(1)
if(i>imin+3 .and. i < imax-3 .and. &
j>jmin+3 .and. j < jmax-3 .and. &
k>kmin+3 .and. k < kmax-3) then
! x direction
f_rhs(i,j,k) = f_rhs(i,j,k) - eps/dX/cof * ( &
(fh(i-4,j,k)+fh(i+4,j,k)) &
- F8 * (fh(i-3,j,k)+fh(i+3,j,k)) &
+F28 * (fh(i-2,j,k)+fh(i+2,j,k)) &
-F56 * (fh(i-1,j,k)+fh(i+1,j,k)) &
+F70 * fh(i,j,k) )
! y direction
f_rhs(i,j,k) = f_rhs(i,j,k) - eps/dY/cof * ( &
(fh(i,j-4,k)+fh(i,j+4,k)) &
- F8 * (fh(i,j-3,k)+fh(i,j+3,k)) &
+F28 * (fh(i,j-2,k)+fh(i,j+2,k)) &
-F56 * (fh(i,j-1,k)+fh(i,j+1,k)) &
+F70 * fh(i,j,k) )
! z direction
f_rhs(i,j,k) = f_rhs(i,j,k) - eps/dZ/cof * ( &
(fh(i,j,k-4)+fh(i,j,k+4)) &
- F8 * (fh(i,j,k-3)+fh(i,j,k+3)) &
+F28 * (fh(i,j,k-2)+fh(i,j,k+2)) &
-F56 * (fh(i,j,k-1)+fh(i,j,k+1)) &
+F70 * fh(i,j,k) )
endif
enddo
enddo
enddo
return
end subroutine kodis
#elif (ghost_width == 5)
! eighth order code
!------------------------------------------------------------------------------------------------------------------------------
!usual type Kreiss-Oliger type numerical dissipation
!We support cell center only
! Note the notation D_+ and D_- [P240 of B. Gustafsson, H.-O. Kreiss, and J. Oliger, Time
! Dependent Problems and Difference Methods (Wiley, New York, 1995).]
! D_+ = (f(i+1) - f(i))/h
! D_- = (f(i) - f(i-1))/h
! then we have D_+D_- = D_-D_+ = (f(i+1) - 2f(i) + f(i-1))/h^2
! for nth order accurate finite difference code, we need r =n/2+1
! D_+^rD_-^r = (D_+D_-)^r
! following the tradiation of PRD 77, 024027 (BB's calibration paper, Eq.(64),
! correct some typo according to above book) :
! + eps*(-1)^(r-1)*h^(2r-1)/2^(2r)*(D_+D_-)^r
!
!
! this is for 8th order accurate finite difference scheme
! (D_+D_-)^5 =
! f(i-5) - 10 f(i-4) + 45 f(i-3) - 120 f(i-2) + 210 f(i-1) - 252 f(i) + 210 f(i+1) - 120 f(i+2) + 45 f(i+3) - 10 f(i+4) + f(i+5)
! -------------------------------------------------------------------------------------------------------------------------------
! dx^10
!---------------------------------------------------------------------------------------------------------------------------------
! do not add dissipation near boundary
subroutine kodis(ex,X,Y,Z,f,f_rhs,SoA,Symmetry,eps)
implicit none
! argument variables
integer,intent(in) :: Symmetry
integer,dimension(3),intent(in)::ex
real*8, dimension(1:3), intent(in) :: SoA
double precision,intent(in),dimension(ex(1))::X
double precision,intent(in),dimension(ex(2))::Y
double precision,intent(in),dimension(ex(3))::Z
double precision,intent(in),dimension(ex(1),ex(2),ex(3))::f
double precision,intent(inout),dimension(ex(1),ex(2),ex(3))::f_rhs
real*8,intent(in) :: eps
!~~~~~~ other variables
real*8 :: dX,dY,dZ
real*8,dimension(-4:ex(1),-4:ex(2),-4:ex(3)) :: fh
integer :: imin,jmin,kmin,imax,jmax,kmax
integer, parameter :: NO_SYMM = 0, EQ_SYMM = 1, OCTANT = 2
real*8,parameter :: cof = 1.024d3 ! 2^2r = 2^10
real*8, parameter :: F10=1.d1,F45=4.5d1,F120=1.2d2,F210=2.1d2,F252=2.52d2
integer::i,j,k
dX = X(2)-X(1)
dY = Y(2)-Y(1)
dZ = Z(2)-Z(1)
imax = ex(1)
jmax = ex(2)
kmax = ex(3)
imin = 1
jmin = 1
kmin = 1
if(Symmetry > NO_SYMM .and. dabs(Z(1)) < dZ) kmin = -4
if(Symmetry > EQ_SYMM .and. dabs(X(1)) < dX) imin = -4
if(Symmetry > EQ_SYMM .and. dabs(Y(1)) < dY) jmin = -4
call symmetry_bd(5,ex,f,fh,SoA)
! f(i-5) - 10 f(i-4) + 45 f(i-3) - 120 f(i-2) + 210 f(i-1) - 252 f(i) + 210 f(i+1) - 120 f(i+2) + 45 f(i+3) - 10 f(i+4) + f(i+5)
! -------------------------------------------------------------------------------------------------------------------------------
! dx^10
! note the sign (-1)^r-1, now r=5
do k=1,ex(3)
do j=1,ex(2)
do i=1,ex(1)
if(i>imin+4 .and. i < imax-4 .and. &
j>jmin+4 .and. j < jmax-4 .and. &
k>kmin+4 .and. k < kmax-4) then
! x direction
f_rhs(i,j,k) = f_rhs(i,j,k) + eps/dX/cof * ( &
(fh(i-5,j,k)+fh(i+5,j,k)) &
- F10 * (fh(i-4,j,k)+fh(i+4,j,k)) &
+ F45 * (fh(i-3,j,k)+fh(i+3,j,k)) &
- F120* (fh(i-2,j,k)+fh(i+2,j,k)) &
+ F210* (fh(i-1,j,k)+fh(i+1,j,k)) &
- F252 * fh(i,j,k) )
! y direction
f_rhs(i,j,k) = f_rhs(i,j,k) + eps/dY/cof * ( &
(fh(i,j-5,k)+fh(i,j+5,k)) &
- F10 * (fh(i,j-4,k)+fh(i,j+4,k)) &
+ F45 * (fh(i,j-3,k)+fh(i,j+3,k)) &
- F120* (fh(i,j-2,k)+fh(i,j+2,k)) &
+ F210* (fh(i,j-1,k)+fh(i,j+1,k)) &
- F252 * fh(i,j,k) )
! z direction
f_rhs(i,j,k) = f_rhs(i,j,k) + eps/dZ/cof * ( &
(fh(i,j,k-5)+fh(i,j,k+5)) &
- F10 * (fh(i,j,k-4)+fh(i,j,k+4)) &
+ F45 * (fh(i,j,k-3)+fh(i,j,k+3)) &
- F120* (fh(i,j,k-2)+fh(i,j,k+2)) &
+ F210* (fh(i,j,k-1)+fh(i,j,k+1)) &
- F252 * fh(i,j,k) )
endif
enddo
enddo
enddo
return
end subroutine kodis
#endif

View File

@@ -7,7 +7,163 @@
! Vertex or Cell is distinguished in routine symmetry_bd which locates in ! Vertex or Cell is distinguished in routine symmetry_bd which locates in
! file "fmisc.f90" ! file "fmisc.f90"
#if (ghost_width == 2)
! second order code
!-----------------------------------------------------------------------------
! v
! D f = ------[ - 3 f + 4 f - f ]
! i 2dx i i+v i+2v
!
! where
!
! i
! |B |
! v = -----
! i
! B
!
!-----------------------------------------------------------------------------
subroutine lopsided(ex,X,Y,Z,f,f_rhs,Sfx,Sfy,Sfz,Symmetry,SoA)
implicit none
!~~~~~~> Input parameters:
integer, intent(in) :: ex(1:3),Symmetry
real*8, intent(in) :: X(1:ex(1)),Y(1:ex(2)),Z(1:ex(3))
real*8,dimension(ex(1),ex(2),ex(3)),intent(in) :: f,Sfx,Sfy,Sfz
real*8,dimension(ex(1),ex(2),ex(3)),intent(inout):: f_rhs
real*8,dimension(3),intent(in) ::SoA
!~~~~~~> local variables:
! note index -1,0, so we have 2 extra points
real*8,dimension(-1:ex(1),-1:ex(2),-1:ex(3)) :: fh
integer :: imin,jmin,kmin,imax,jmax,kmax,i,j,k
real*8 :: dX,dY,dZ
real*8 :: d2dx,d2dy,d2dz
real*8, parameter :: ZEO=0.d0,ONE=1.d0,TWO=2.d0,THR=3.d0,FOUR=4.d0
integer, parameter :: NO_SYMM = 0, EQ_SYMM = 1, OCTANT = 2
dX = X(2)-X(1)
dY = Y(2)-Y(1)
dZ = Z(2)-Z(1)
d2dx = ONE/TWO/dX
d2dy = ONE/TWO/dY
d2dz = ONE/TWO/dZ
imax = ex(1)
jmax = ex(2)
kmax = ex(3)
imin = 1
jmin = 1
kmin = 1
if(Symmetry > NO_SYMM .and. dabs(Z(1)) < dZ) kmin = -1
if(Symmetry > EQ_SYMM .and. dabs(X(1)) < dX) imin = -1
if(Symmetry > EQ_SYMM .and. dabs(Y(1)) < dY) jmin = -1
call symmetry_bd(2,ex,f,fh,SoA)
! upper bound set ex-1 only for efficiency,
! the loop body will set ex 0 also
do k=1,ex(3)-1
do j=1,ex(2)-1
do i=1,ex(1)-1
! x direction
if(Sfx(i,j,k) >= ZEO)then
if( i+2 <= imax .and. i >= imin)then
! v
! D f = ------[ - 3 f + 4 f - f ]
! i 2dx i i+v i+2v
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfx(i,j,k)*d2dx*(-THR*fh(i,j,k)+FOUR*fh(i+1,j,k)-fh(i+2,j,k))
elseif(i+1 <= imax .and. i >= imin)then
! v
! D f = ------[ - f + f ]
! i dx i i+v
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfx(i,j,k)*d2dx*(-fh(i,j,k)+fh(i+1,j,k))
endif
elseif(Sfx(i,j,k) <= ZEO)then
if( i-2 >= imin .and. i <= imax)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfx(i,j,k)*d2dx*(-THR*fh(i,j,k)+FOUR*fh(i-1,j,k)-fh(i-2,j,k))
elseif(i-1 >= imin .and. i <= imax)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfx(i,j,k)*d2dx*(-fh(i,j,k)+fh(i-1,j,k))
endif
! set imax and imin 0
endif
! y direction
if(Sfy(i,j,k) >= ZEO)then
if( j+2 <= jmax .and. j >= jmin)then
! v
! D f = ------[ - 3 f + 4 f - f ]
! i 2dx i i+v i+2v
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfy(i,j,k)*d2dy*(-THR*fh(i,j,k)+FOUR*fh(i,j+1,k)-fh(i,j+2,k))
elseif(j+1 <= jmax .and. j >= jmin)then
! v
! D f = ------[ - f + f ]
! i dx i i+v
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfy(i,j,k)*d2dy*(-fh(i,j,k)+fh(i,j+1,k))
endif
elseif(Sfy(i,j,k) <= ZEO)then
if( j-2 >= jmin .and. j <= jmax)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfy(i,j,k)*d2dy*(-THR*fh(i,j,k)+FOUR*fh(i,j-1,k)-fh(i,j-2,k))
elseif(j-1 >= jmin .and. j <= jmax)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfy(i,j,k)*d2dy*(-fh(i,j,k)+fh(i,j-1,k))
endif
! set jmin and jmax 0
endif
!! z direction
if(Sfz(i,j,k) >= ZEO)then
if( k+2 <= kmax .and. k >= kmin)then
! v
! D f = ------[ - 3 f + 4 f - f ]
! i 2dx i i+v i+2v
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfz(i,j,k)*d2dz*(-THR*fh(i,j,k)+FOUR*fh(i,j,k+1)-fh(i,j,k+2))
elseif(k+1 <= kmax .and. k >= kmin)then
! v
! D f = ------[ - f + f ]
! i dx i i+v
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfz(i,j,k)*d2dz*(-fh(i,j,k)+fh(i,j,k+1))
endif
elseif(Sfz(i,j,k) <= ZEO)then
if( k-2 >= kmin .and. k <= kmax)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfz(i,j,k)*d2dz*(-THR*fh(i,j,k)+FOUR*fh(i,j,k-1)-fh(i,j,k-2))
elseif(k-1 >= kmin .and. k <= kmax)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfz(i,j,k)*d2dz*(-fh(i,j,k)+fh(i,j,k-1))
endif
! set kmin and kmax 0
endif
enddo
enddo
enddo
return
end subroutine lopsided
#elif (ghost_width == 3)
! fourth order code ! fourth order code
!----------------------------------------------------------------------------- !-----------------------------------------------------------------------------
@@ -80,7 +236,89 @@ subroutine lopsided(ex,X,Y,Z,f,f_rhs,Sfx,Sfy,Sfz,Symmetry,SoA)
do k=1,ex(3)-1 do k=1,ex(3)-1
do j=1,ex(2)-1 do j=1,ex(2)-1
do i=1,ex(1)-1 do i=1,ex(1)-1
#if 0
!! old code
! x direction
if(Sfx(i,j,k) >= ZEO .and. i+3 <= imax .and. i-1 >= imin)then
! v
! D f = ------[ - 3f - 10f + 18f - 6f + f ]
! i 12dx i-v i i+v i+2v i+3v
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfx(i,j,k)*d12dx*(-F3*fh(i-1,j,k)-F10*fh(i,j,k)+F18*fh(i+1,j,k) &
-F6*fh(i+2,j,k)+ fh(i+3,j,k))
elseif(Sfx(i,j,k) <= ZEO .and. i-3 >= imin .and. i+1 <= imax)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfx(i,j,k)*d12dx*(-F3*fh(i+1,j,k)-F10*fh(i,j,k)+F18*fh(i-1,j,k) &
-F6*fh(i-2,j,k)+ fh(i-3,j,k))
elseif(i+2 <= imax .and. i-2 >= imin)then
!
! f(i-2) - 8 f(i-1) + 8 f(i+1) - f(i+2)
! fx(i) = ---------------------------------------------
! 12 dx
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfx(i,j,k)*d12dx*(fh(i-2,j,k)-EIT*fh(i-1,j,k)+EIT*fh(i+1,j,k)-fh(i+2,j,k))
elseif(i+1 <= imax .and. i-1 >= imin)then
!
! - f(i-1) + f(i+1)
! fx(i) = --------------------------------
! 2 dx
f_rhs(i,j,k)=f_rhs(i,j,k) + Sfx(i,j,k)*d2dx*(-fh(i-1,j,k)+fh(i+1,j,k))
! set imax and imin 0
endif
! y direction
if(Sfy(i,j,k) >= ZEO .and. j+3 <= jmax .and. j-1 >= jmin)then
! v
! D f = ------[ - 3f - 10f + 18f - 6f + f ]
! i 12dx i-v i i+v i+2v i+3v
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfy(i,j,k)*d12dy*(-F3*fh(i,j-1,k)-F10*fh(i,j,k)+F18*fh(i,j+1,k) &
-F6*fh(i,j+2,k)+ fh(i,j+3,k))
elseif(Sfy(i,j,k) <= ZEO .and. j-3 >= jmin .and. j+1 <= jmax)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfy(i,j,k)*d12dy*(-F3*fh(i,j+1,k)-F10*fh(i,j,k)+F18*fh(i,j-1,k) &
-F6*fh(i,j-2,k)+ fh(i,j-3,k))
elseif(j+2 <= jmax .and. j-2 >= jmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfy(i,j,k)*d12dy*(fh(i,j-2,k)-EIT*fh(i,j-1,k)+EIT*fh(i,j+1,k)-fh(i,j+2,k))
elseif(j+1 <= jmax .and. j-1 >= jmin)then
f_rhs(i,j,k)=f_rhs(i,j,k) + Sfy(i,j,k)*d2dy*(-fh(i,j-1,k)+fh(i,j+1,k))
! set jmin and jmax 0
endif
!! z direction
if(Sfz(i,j,k) >= ZEO .and. k+3 <= kmax .and. k-1 >= kmin)then
! v
! D f = ------[ - 3f - 10f + 18f - 6f + f ]
! i 12dx i-v i i+v i+2v i+3v
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfz(i,j,k)*d12dz*(-F3*fh(i,j,k-1)-F10*fh(i,j,k)+F18*fh(i,j,k+1) &
-F6*fh(i,j,k+2)+ fh(i,j,k+3))
elseif(Sfz(i,j,k) <= ZEO .and. k-3 >= kmin .and. k+1 <= kmax)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfz(i,j,k)*d12dz*(-F3*fh(i,j,k+1)-F10*fh(i,j,k)+F18*fh(i,j,k-1) &
-F6*fh(i,j,k-2)+ fh(i,j,k-3))
elseif(k+2 <= kmax .and. k-2 >= kmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfz(i,j,k)*d12dz*(fh(i,j,k-2)-EIT*fh(i,j,k-1)+EIT*fh(i,j,k+1)-fh(i,j,k+2))
elseif(k+1 <= kmax .and. k-1 >= kmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+Sfz(i,j,k)*d2dz*(-fh(i,j,k-1)+fh(i,j,k+1))
! set kmin and kmax 0
endif
#else
!! new code, 2012dec27, based on bam !! new code, 2012dec27, based on bam
! x direction ! x direction
if(Sfx(i,j,k) > ZEO)then if(Sfx(i,j,k) > ZEO)then
@@ -240,6 +478,7 @@ subroutine lopsided(ex,X,Y,Z,f,f_rhs,Sfx,Sfy,Sfz,Symmetry,SoA)
! set kmax and kmin 0 ! set kmax and kmin 0
endif endif
endif endif
#endif
enddo enddo
enddo enddo
enddo enddo
@@ -247,3 +486,612 @@ subroutine lopsided(ex,X,Y,Z,f,f_rhs,Sfx,Sfy,Sfz,Symmetry,SoA)
return return
end subroutine lopsided end subroutine lopsided
!-----------------------------------------------------------------------------
! Combined advection (lopsided) + Kreiss-Oliger dissipation (kodis)
! Shares the symmetry_bd buffer fh, eliminating one full-grid copy per call.
! Mathematically identical to calling lopsided then kodis separately.
!-----------------------------------------------------------------------------
subroutine lopsided_kodis(ex,X,Y,Z,f,f_rhs,Sfx,Sfy,Sfz,Symmetry,SoA,eps)
implicit none
!~~~~~~> Input parameters:
integer, intent(in) :: ex(1:3),Symmetry
real*8, intent(in) :: X(1:ex(1)),Y(1:ex(2)),Z(1:ex(3))
real*8,dimension(ex(1),ex(2),ex(3)),intent(in) :: f,Sfx,Sfy,Sfz
real*8,dimension(ex(1),ex(2),ex(3)),intent(inout):: f_rhs
real*8,dimension(3),intent(in) ::SoA
real*8,intent(in) :: eps
!~~~~~~> local variables:
! note index -2,-1,0, so we have 3 extra points
real*8,dimension(-2:ex(1),-2:ex(2),-2:ex(3)) :: fh
integer :: imin,jmin,kmin,imax,jmax,kmax,i,j,k
real*8 :: dX,dY,dZ
real*8 :: d12dx,d12dy,d12dz,d2dx,d2dy,d2dz
real*8, parameter :: ZEO=0.d0,ONE=1.d0, F3=3.d0
real*8, parameter :: TWO=2.d0,F6=6.0d0,F18=1.8d1
real*8, parameter :: F12=1.2d1, F10=1.d1,EIT=8.d0
integer, parameter :: NO_SYMM = 0, EQ_SYMM = 1, OCTANT = 2
! kodis parameters
real*8, parameter :: SIX=6.d0,FIT=1.5d1,TWT=2.d1
real*8, parameter :: cof=6.4d1 ! 2^6
dX = X(2)-X(1)
dY = Y(2)-Y(1)
dZ = Z(2)-Z(1)
d12dx = ONE/F12/dX
d12dy = ONE/F12/dY
d12dz = ONE/F12/dZ
d2dx = ONE/TWO/dX
d2dy = ONE/TWO/dY
d2dz = ONE/TWO/dZ
imax = ex(1)
jmax = ex(2)
kmax = ex(3)
imin = 1
jmin = 1
kmin = 1
if(Symmetry > NO_SYMM .and. dabs(Z(1)) < dZ) kmin = -2
if(Symmetry > EQ_SYMM .and. dabs(X(1)) < dX) imin = -2
if(Symmetry > EQ_SYMM .and. dabs(Y(1)) < dY) jmin = -2
! Single symmetry_bd call shared by both advection and dissipation
call symmetry_bd(3,ex,f,fh,SoA)
! ---- Advection (lopsided) loop ----
! upper bound set ex-1 only for efficiency,
! the loop body will set ex 0 also
do k=1,ex(3)-1
do j=1,ex(2)-1
do i=1,ex(1)-1
! x direction
if(Sfx(i,j,k) > ZEO)then
if(i+3 <= imax)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfx(i,j,k)*d12dx*(-F3*fh(i-1,j,k)-F10*fh(i,j,k)+F18*fh(i+1,j,k) &
-F6*fh(i+2,j,k)+ fh(i+3,j,k))
elseif(i+2 <= imax)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfx(i,j,k)*d12dx*(fh(i-2,j,k)-EIT*fh(i-1,j,k)+EIT*fh(i+1,j,k)-fh(i+2,j,k))
elseif(i+1 <= imax)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfx(i,j,k)*d12dx*(-F3*fh(i+1,j,k)-F10*fh(i,j,k)+F18*fh(i-1,j,k) &
-F6*fh(i-2,j,k)+ fh(i-3,j,k))
endif
elseif(Sfx(i,j,k) < ZEO)then
if(i-3 >= imin)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfx(i,j,k)*d12dx*(-F3*fh(i+1,j,k)-F10*fh(i,j,k)+F18*fh(i-1,j,k) &
-F6*fh(i-2,j,k)+ fh(i-3,j,k))
elseif(i-2 >= imin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfx(i,j,k)*d12dx*(fh(i-2,j,k)-EIT*fh(i-1,j,k)+EIT*fh(i+1,j,k)-fh(i+2,j,k))
elseif(i-1 >= imin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfx(i,j,k)*d12dx*(-F3*fh(i-1,j,k)-F10*fh(i,j,k)+F18*fh(i+1,j,k) &
-F6*fh(i+2,j,k)+ fh(i+3,j,k))
endif
endif
! y direction
if(Sfy(i,j,k) > ZEO)then
if(j+3 <= jmax)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfy(i,j,k)*d12dy*(-F3*fh(i,j-1,k)-F10*fh(i,j,k)+F18*fh(i,j+1,k) &
-F6*fh(i,j+2,k)+ fh(i,j+3,k))
elseif(j+2 <= jmax)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfy(i,j,k)*d12dy*(fh(i,j-2,k)-EIT*fh(i,j-1,k)+EIT*fh(i,j+1,k)-fh(i,j+2,k))
elseif(j+1 <= jmax)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfy(i,j,k)*d12dy*(-F3*fh(i,j+1,k)-F10*fh(i,j,k)+F18*fh(i,j-1,k) &
-F6*fh(i,j-2,k)+ fh(i,j-3,k))
endif
elseif(Sfy(i,j,k) < ZEO)then
if(j-3 >= jmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfy(i,j,k)*d12dy*(-F3*fh(i,j+1,k)-F10*fh(i,j,k)+F18*fh(i,j-1,k) &
-F6*fh(i,j-2,k)+ fh(i,j-3,k))
elseif(j-2 >= jmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfy(i,j,k)*d12dy*(fh(i,j-2,k)-EIT*fh(i,j-1,k)+EIT*fh(i,j+1,k)-fh(i,j+2,k))
elseif(j-1 >= jmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfy(i,j,k)*d12dy*(-F3*fh(i,j-1,k)-F10*fh(i,j,k)+F18*fh(i,j+1,k) &
-F6*fh(i,j+2,k)+ fh(i,j+3,k))
endif
endif
! z direction
if(Sfz(i,j,k) > ZEO)then
if(k+3 <= kmax)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfz(i,j,k)*d12dz*(-F3*fh(i,j,k-1)-F10*fh(i,j,k)+F18*fh(i,j,k+1) &
-F6*fh(i,j,k+2)+ fh(i,j,k+3))
elseif(k+2 <= kmax)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfz(i,j,k)*d12dz*(fh(i,j,k-2)-EIT*fh(i,j,k-1)+EIT*fh(i,j,k+1)-fh(i,j,k+2))
elseif(k+1 <= kmax)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfz(i,j,k)*d12dz*(-F3*fh(i,j,k+1)-F10*fh(i,j,k)+F18*fh(i,j,k-1) &
-F6*fh(i,j,k-2)+ fh(i,j,k-3))
endif
elseif(Sfz(i,j,k) < ZEO)then
if(k-3 >= kmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfz(i,j,k)*d12dz*(-F3*fh(i,j,k+1)-F10*fh(i,j,k)+F18*fh(i,j,k-1) &
-F6*fh(i,j,k-2)+ fh(i,j,k-3))
elseif(k-2 >= kmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfz(i,j,k)*d12dz*(fh(i,j,k-2)-EIT*fh(i,j,k-1)+EIT*fh(i,j,k+1)-fh(i,j,k+2))
elseif(k-1 >= kmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfz(i,j,k)*d12dz*(-F3*fh(i,j,k-1)-F10*fh(i,j,k)+F18*fh(i,j,k+1) &
-F6*fh(i,j,k+2)+ fh(i,j,k+3))
endif
endif
enddo
enddo
enddo
! ---- Dissipation (kodis) loop ----
if(eps > ZEO) then
do k=1,ex(3)
do j=1,ex(2)
do i=1,ex(1)
if(i-3 >= imin .and. i+3 <= imax .and. &
j-3 >= jmin .and. j+3 <= jmax .and. &
k-3 >= kmin .and. k+3 <= kmax) then
f_rhs(i,j,k) = f_rhs(i,j,k) + eps/cof *( ( &
(fh(i-3,j,k)+fh(i+3,j,k)) - &
SIX*(fh(i-2,j,k)+fh(i+2,j,k)) + &
FIT*(fh(i-1,j,k)+fh(i+1,j,k)) - &
TWT* fh(i,j,k) )/dX + &
( &
(fh(i,j-3,k)+fh(i,j+3,k)) - &
SIX*(fh(i,j-2,k)+fh(i,j+2,k)) + &
FIT*(fh(i,j-1,k)+fh(i,j+1,k)) - &
TWT* fh(i,j,k) )/dY + &
( &
(fh(i,j,k-3)+fh(i,j,k+3)) - &
SIX*(fh(i,j,k-2)+fh(i,j,k+2)) + &
FIT*(fh(i,j,k-1)+fh(i,j,k+1)) - &
TWT* fh(i,j,k) )/dZ )
endif
enddo
enddo
enddo
endif
return
end subroutine lopsided_kodis
#elif (ghost_width == 4)
! sixth order code
! Compute advection terms in right hand sides of field equations
! v
! D f = ------[ 2f - 24f - 35f + 80f - 30f + 8f - f ]
! i 60dx i-2v i-v i i+v i+2v i+3v i+4v
!
! where
!
! i
! |B |
! v = -----
! i
! B
!
!-----------------------------------------------------------------------------
subroutine lopsided(ex,X,Y,Z,f,f_rhs,Sfx,Sfy,Sfz,Symmetry,SoA)
implicit none
!~~~~~~> Input parameters:
integer, intent(in) :: ex(1:3),Symmetry
real*8, intent(in) :: X(1:ex(1)),Y(1:ex(2)),Z(1:ex(3))
real*8,dimension(ex(1),ex(2),ex(3)),intent(in) :: f,Sfx,Sfy,Sfz
real*8,dimension(ex(1),ex(2),ex(3)),intent(inout):: f_rhs
real*8,dimension(3),intent(in) ::SoA
!~~~~~~> local variables:
real*8,dimension(-3:ex(1),-3:ex(2),-3:ex(3)) :: fh
integer :: imin,jmin,kmin,imax,jmax,kmax,i,j,k
real*8 :: dX,dY,dZ
real*8 :: d60dx,d60dy,d60dz,d12dx,d12dy,d12dz,d2dx,d2dy,d2dz
real*8, parameter :: ZEO=0.d0,ONE=1.d0, F60=6.d1
real*8, parameter :: TWO=2.d0,F24=2.4d1,F35=3.5d1,F80=8.d1,F30=3.d1,EIT=8.d0
real*8, parameter :: F9=9.d0,F45=4.5d1,F12=1.2d1
real*8, parameter :: F10=1.d1,F77=7.7d1,F150=1.5d2,F100=1.d2,F50=5.d1,F15=1.5d1
integer, parameter :: NO_SYMM = 0, EQ_SYMM = 1, OCTANT = 2
dX = X(2)-X(1)
dY = Y(2)-Y(1)
dZ = Z(2)-Z(1)
d60dx = ONE/F60/dX
d60dy = ONE/F60/dY
d60dz = ONE/F60/dZ
d12dx = ONE/F12/dX
d12dy = ONE/F12/dY
d12dz = ONE/F12/dZ
d2dx = ONE/TWO/dX
d2dy = ONE/TWO/dY
d2dz = ONE/TWO/dZ
imax = ex(1)
jmax = ex(2)
kmax = ex(3)
imin = 1
jmin = 1
kmin = 1
if(Symmetry > NO_SYMM .and. dabs(Z(1)) < dZ) kmin = -3
if(Symmetry > EQ_SYMM .and. dabs(X(1)) < dX) imin = -3
if(Symmetry > EQ_SYMM .and. dabs(Y(1)) < dY) jmin = -3
call symmetry_bd(4,ex,f,fh,SoA)
! upper bound set ex-1 only for efficiency,
! the loop body will set ex 0 also
do k=1,ex(3)-1
do j=1,ex(2)-1
do i=1,ex(1)-1
! x direction
if(Sfx(i,j,k) >= ZEO .and. i+4 <= imax .and. i-2 >= imin)then
! v
! D f = ------[ 2f - 24f - 35f + 80f - 30f + 8f - f ]
! i 60dx i-2v i-v i i+v i+2v i+3v i+4v
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfx(i,j,k)*d60dx*(TWO*fh(i-2,j,k)-F24*fh(i-1,j,k)-F35*fh(i,j,k)+F80*fh(i+1,j,k) &
-F30*fh(i+2,j,k)+EIT*fh(i+3,j,k)- fh(i+4,j,k))
elseif(Sfx(i,j,k) >= ZEO .and. i+5 <= imax .and. i-1 >= imin)then
! v
! D f = ------[-10f - 77f + 150f - 100f + 50f -15f + 2f ]
! i 60dx i-v i i+v i+2v i+3v i+4v i+5v
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfx(i,j,k)*d60dx*(-F10*fh(i-1,j,k)-F77*fh(i ,j,k)+F150*fh(i+1,j,k)-F100*fh(i+2,j,k) &
+F50*fh(i+3,j,k)-F15*fh(i+4,j,k)+ TWO*fh(i+5,j,k))
elseif(Sfx(i,j,k) <= ZEO .and. i-4 >= imin .and. i+2 <= imax)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfx(i,j,k)*d60dx*(TWO*fh(i+2,j,k)-F24*fh(i+1,j,k)-F35*fh(i,j,k)+F80*fh(i-1,j,k) &
-F30*fh(i-2,j,k)+EIT*fh(i-3,j,k)- fh(i-4,j,k))
elseif(Sfx(i,j,k) <= ZEO .and. i-5 >= imin .and. i+1 <= imax)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfx(i,j,k)*d60dx*(-F10*fh(i+1,j,k)-F77*fh(i ,j,k)+F150*fh(i-1,j,k)-F100*fh(i-2,j,k) &
+F50*fh(i-3,j,k)-F15*fh(i-4,j,k)+ TWO*fh(i-5,j,k))
elseif(i+3 <= imax .and. i-3 >= imin)then
! - f(i-3) + 9 f(i-2) - 45 f(i-1) + 45 f(i+1) - 9 f(i+2) + f(i+3)
! fx(i) = -----------------------------------------------------------------
! 60 dx
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfx(i,j,k)*d60dx*(-fh(i-3,j,k)+F9*fh(i-2,j,k)-F45*fh(i-1,j,k)+F45*fh(i+1,j,k)-F9*fh(i+2,j,k)+fh(i+3,j,k))
elseif(i+2 <= imax .and. i-2 >= imin)then
!
! f(i-2) - 8 f(i-1) + 8 f(i+1) - f(i+2)
! fx(i) = ---------------------------------------------
! 12 dx
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfx(i,j,k)*d12dx*(fh(i-2,j,k)-EIT*fh(i-1,j,k)+EIT*fh(i+1,j,k)-fh(i+2,j,k))
elseif(i+1 <= imax .and. i-1 >= imin)then
!
! - f(i-1) + f(i+1)
! fx(i) = --------------------------------
! 2 dx
f_rhs(i,j,k)=f_rhs(i,j,k) + Sfx(i,j,k)*d2dx*(-fh(i-1,j,k)+fh(i+1,j,k))
! set imax and imin 0
endif
! y direction
if(Sfy(i,j,k) >= ZEO .and. j+4 <= jmax .and. j-2 >= jmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfy(i,j,k)*d60dy*(TWO*fh(i,j-2,k)-F24*fh(i,j-1,k)-F35*fh(i,j,k)+F80*fh(i,j+1,k) &
-F30*fh(i,j+2,k)+EIT*fh(i,j+3,k)- fh(i,j+4,k))
elseif(Sfy(i,j,k) >= ZEO .and. j+5 <= jmax .and. j-1 >= jmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfy(i,j,k)*d60dy*(-F10*fh(i,j-1,k)-F77*fh(i,j ,k)+F150*fh(i,j+1,k)-F100*fh(i,j+2,k) &
+F50*fh(i,j+3,k)-F15*fh(i,j+4,k)+ TWO*fh(i,j+5,k))
elseif(Sfy(i,j,k) <= ZEO .and. j-4 >= jmin .and. j+2 <= jmax)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfy(i,j,k)*d60dy*(TWO*fh(i,j+2,k)-F24*fh(i,j+1,k)-F35*fh(i,j,k)+F80*fh(i,j-1,k) &
-F30*fh(i,j-2,k)+EIT*fh(i,j-3,k)- fh(i,j-4,k))
elseif(Sfy(i,j,k) <= ZEO .and. j-5 >= jmin .and. j+1 <= jmax)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfy(i,j,k)*d60dy*(-F10*fh(i,j+1,k)-F77*fh(i,j ,k)+F150*fh(i,j-1,k)-F100*fh(i,j-2,k) &
+F50*fh(i,j-3,k)-F15*fh(i,j-4,k)+ TWO*fh(i,j-5,k))
elseif(j+3 <= jmax .and. j-3 >= jmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfy(i,j,k)*d60dy*(-fh(i,j-3,k)+F9*fh(i,j-2,k)-F45*fh(i,j-1,k)+F45*fh(i,j+1,k)-F9*fh(i,j+2,k)+fh(i,j+3,k))
elseif(j+2 <= jmax .and. j-2 >= jmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfy(i,j,k)*d12dy*(fh(i,j-2,k)-EIT*fh(i,j-1,k)+EIT*fh(i,j+1,k)-fh(i,j+2,k))
elseif(j+1 <= jmax .and. j-1 >= jmin)then
f_rhs(i,j,k)=f_rhs(i,j,k) + Sfy(i,j,k)*d2dy*(-fh(i,j-1,k)+fh(i,j+1,k))
! set jmin and jmax 0
endif
!! z direction
if(Sfz(i,j,k) >= ZEO .and. k+4 <= kmax .and. k-2 >= kmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfz(i,j,k)*d60dz*(TWO*fh(i,j,k-2)-F24*fh(i,j,k-1)-F35*fh(i,j,k)+F80*fh(i,j,k+1) &
-F30*fh(i,j,k+2)+EIT*fh(i,j,k+3)- fh(i,j,k+4))
elseif(Sfz(i,j,k) >= ZEO .and. k+5 <= kmax .and. k-1 >= kmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfz(i,j,k)*d60dz*(-F10*fh(i,j,k-1)-F77*fh(i,j,k )+F150*fh(i,j,k+1)-F100*fh(i,j,k+2) &
+F50*fh(i,j,k+3)-F15*fh(i,j,k+4)+ TWO*fh(i,j,k+5))
elseif(Sfz(i,j,k) <= ZEO .and. k-4 >= kmin .and. k+2 <= kmax)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfz(i,j,k)*d60dz*(TWO*fh(i,j,k+2)-F24*fh(i,j,k+1)-F35*fh(i,j,k)+F80*fh(i,j,k-1) &
-F30*fh(i,j,k-2)+EIT*fh(i,j,k-3)- fh(i,j,k-4))
elseif(Sfz(i,j,k) <= ZEO .and. k-5 >= kmin .and. k+1 <= kmax)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfz(i,j,k)*d60dz*(-F10*fh(i,j,k+1)-F77*fh(i,j,k )+F150*fh(i,j,k-1)-F100*fh(i,j,k-2) &
+F50*fh(i,j,k-3)-F15*fh(i,j,k-4)+ TWO*fh(i,j,k-5))
elseif(k+3 <= kmax .and. k-3 >= kmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfz(i,j,k)*d60dz*(-fh(i,j,k-3)+F9*fh(i,j,k-2)-F45*fh(i,j,k-1)+F45*fh(i,j,k+1)-F9*fh(i,j,k+2)+fh(i,j,k+3))
elseif(k+2 <= kmax .and. k-2 >= kmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfz(i,j,k)*d12dz*(fh(i,j,k-2)-EIT*fh(i,j,k-1)+EIT*fh(i,j,k+1)-fh(i,j,k+2))
elseif(k+1 <= kmax .and. k-1 >= kmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+Sfz(i,j,k)*d2dz*(-fh(i,j,k-1)+fh(i,j,k+1))
! set kmin and kmax 0
endif
enddo
enddo
enddo
return
end subroutine lopsided
#elif (ghost_width == 5)
! eighth order code
!-----------------------------------------------------------------------------
! PRD 77, 024034 (2008)
! Compute advection terms in right hand sides of field equations
! v [ - 5 f(i-3v) + 60 f(i-2v) - 420 f(i-v) - 378 f(i) + 1050 f(i+v) - 420 f(i+2v) + 140 f(i+3v) - 30 f(i+4v) + 3 f(i+5v)]
! D f = --------------------------------------------------------------------------------------------------------------------------
! i 840 dx
!
! where
!
! i
! |B |
! v = -----
! i
! B
!
!-----------------------------------------------------------------------------
subroutine lopsided(ex,X,Y,Z,f,f_rhs,Sfx,Sfy,Sfz,Symmetry,SoA)
implicit none
!~~~~~~> Input parameters:
integer, intent(in) :: ex(1:3),Symmetry
real*8, intent(in) :: X(1:ex(1)),Y(1:ex(2)),Z(1:ex(3))
real*8,dimension(ex(1),ex(2),ex(3)),intent(in) :: f,Sfx,Sfy,Sfz
real*8,dimension(ex(1),ex(2),ex(3)),intent(inout):: f_rhs
real*8,dimension(3),intent(in) ::SoA
!~~~~~~> local variables:
real*8,dimension(-4:ex(1),-4:ex(2),-4:ex(3)) :: fh
integer :: imin,jmin,kmin,imax,jmax,kmax,i,j,k
real*8 :: dX,dY,dZ
real*8 :: d840dx,d840dy,d840dz,d60dx,d60dy,d60dz,d12dx,d12dy,d12dz,d2dx,d2dy,d2dz
real*8, parameter :: ZEO=0.d0,ONE=1.d0, F60=6.d1
real*8, parameter :: TWO=2.d0,F30=3.d1,EIT=8.d0
real*8, parameter :: F9=9.d0,F45=4.5d1,F12=1.2d1,F140=1.4d2,THR=3.d0
real*8, parameter :: F840=8.4d2,F5=5.d0,F420=4.2d2,F378=3.78d2,F1050=1.05d3
real*8, parameter :: F32=3.2d1,F168=1.68d2,F672=6.72d2
integer, parameter :: NO_SYMM = 0, EQ_SYMM = 1, OCTANT = 2
dX = X(2)-X(1)
dY = Y(2)-Y(1)
dZ = Z(2)-Z(1)
d840dx = ONE/F840/dX
d840dy = ONE/F840/dY
d840dz = ONE/F840/dZ
d60dx = ONE/F60/dX
d60dy = ONE/F60/dY
d60dz = ONE/F60/dZ
d12dx = ONE/F12/dX
d12dy = ONE/F12/dY
d12dz = ONE/F12/dZ
d2dx = ONE/TWO/dX
d2dy = ONE/TWO/dY
d2dz = ONE/TWO/dZ
imax = ex(1)
jmax = ex(2)
kmax = ex(3)
imin = 1
jmin = 1
kmin = 1
if(Symmetry > NO_SYMM .and. dabs(Z(1)) < dZ) kmin = -4
if(Symmetry > EQ_SYMM .and. dabs(X(1)) < dX) imin = -4
if(Symmetry > EQ_SYMM .and. dabs(Y(1)) < dY) jmin = -4
call symmetry_bd(5,ex,f,fh,SoA)
! upper bound set ex-1 only for efficiency,
! the loop body will set ex 0 also
do k=1,ex(3)-1
do j=1,ex(2)-1
do i=1,ex(1)-1
! x direction
if(Sfx(i,j,k) >= ZEO .and. i+5 <= imax .and. i-3 >= imin)then
! v [ - 5 f(i-3v) + 60 f(i-2v) - 420 f(i-v) - 378 f(i) + 1050 f(i+v) - 420 f(i+2v) + 140 f(i+3v) - 30 f(i+4v) + 3 f(i+5v)]
! D f = --------------------------------------------------------------------------------------------------------------------------
! i 840 dx
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfx(i,j,k)*d840dx*(-F5*fh(i-3,j,k)+F60 *fh(i-2,j,k)-F420*fh(i-1,j,k)-F378*fh(i ,j,k) &
+F1050*fh(i+1,j,k)-F420*fh(i+2,j,k)+F140*fh(i+3,j,k)-F30 *fh(i+4,j,k)+THR*fh(i+5,j,k))
elseif(Sfx(i,j,k) <= ZEO .and. i-5 >= imin .and. i+3 <= imax)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfx(i,j,k)*d840dx*(-F5*fh(i+3,j,k)+F60 *fh(i+2,j,k)-F420*fh(i+1,j,k)-F378*fh(i ,j,k) &
+F1050*fh(i-1,j,k)-F420*fh(i-2,j,k)+F140*fh(i-3,j,k)- F30*fh(i-4,j,k)+THR*fh(i-5,j,k))
elseif(i+4 <= imax .and. i-4 >= imin)then
! 3 f(i-4) - 32 f(i-3) + 168 f(i-2) - 672 f(i-1) + 672 f(i+1) - 168 f(i+2) + 32 f(i+3) - 3 f(i+4)
! fx(i) = -------------------------------------------------------------------------------------------------
! 840 dx
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfx(i,j,k)*d840dx*( THR*fh(i-4,j,k)-F32 *fh(i-3,j,k)+F168*fh(i-2,j,k)-F672*fh(i-1,j,k)+ &
F672*fh(i+1,j,k)-F168*fh(i+2,j,k)+F32 *fh(i+3,j,k)-THR *fh(i+4,j,k))
elseif(i+3 <= imax .and. i-3 >= imin)then
! - f(i-3) + 9 f(i-2) - 45 f(i-1) + 45 f(i+1) - 9 f(i+2) + f(i+3)
! fx(i) = -----------------------------------------------------------------
! 60 dx
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfx(i,j,k)*d60dx*(-fh(i-3,j,k)+F9*fh(i-2,j,k)-F45*fh(i-1,j,k)+F45*fh(i+1,j,k)-F9*fh(i+2,j,k)+fh(i+3,j,k))
elseif(i+2 <= imax .and. i-2 >= imin)then
!
! f(i-2) - 8 f(i-1) + 8 f(i+1) - f(i+2)
! fx(i) = ---------------------------------------------
! 12 dx
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfx(i,j,k)*d12dx*(fh(i-2,j,k)-EIT*fh(i-1,j,k)+EIT*fh(i+1,j,k)-fh(i+2,j,k))
elseif(i+1 <= imax .and. i-1 >= imin)then
!
! - f(i-1) + f(i+1)
! fx(i) = --------------------------------
! 2 dx
f_rhs(i,j,k)=f_rhs(i,j,k) + Sfx(i,j,k)*d2dx*(-fh(i-1,j,k)+fh(i+1,j,k))
! set imax and imin 0
endif
! y direction
if(Sfy(i,j,k) >= ZEO .and. j+5 <= jmax .and. j-3 >= jmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfy(i,j,k)*d840dy*(-F5*fh(i,j-3,k)+F60 *fh(i,j-2,k)-F420*fh(i,j-1,k)-F378*fh(i,j ,k) &
+F1050*fh(i,j+1,k)-F420*fh(i,j+2,k)+F140*fh(i,j+3,k)-F30 *fh(i,j+4,k)+THR*fh(i,j+5,k))
elseif(Sfy(i,j,k) <= ZEO .and. j-5 >= jmin .and. j+3 <= jmax)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfy(i,j,k)*d840dy*(-F5*fh(i,j+3,k)+F60 *fh(i,j+2,k)-F420*fh(i,j+1,k)-F378*fh(i,j ,k) &
+F1050*fh(i,j-1,k)-F420*fh(i,j-2,k)+F140*fh(i,j-3,k)- F30*fh(i,j-4,k)+THR*fh(i,j-5,k))
elseif(j+4 <= jmax .and. j-4 >= jmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfy(i,j,k)*d840dy*( THR*fh(i,j-4,k)-F32 *fh(i,j-3,k)+F168*fh(i,j-2,k)-F672*fh(i,j-1,k)+ &
F672*fh(i,j+1,k)-F168*fh(i,j+2,k)+F32 *fh(i,j+3,k)-THR *fh(i,j+4,k))
elseif(j+3 <= jmax .and. j-3 >= jmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfy(i,j,k)*d60dy*(-fh(i,j-3,k)+F9*fh(i,j-2,k)-F45*fh(i,j-1,k)+F45*fh(i,j+1,k)-F9*fh(i,j+2,k)+fh(i,j+3,k))
elseif(j+2 <= jmax .and. j-2 >= jmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfy(i,j,k)*d12dy*(fh(i,j-2,k)-EIT*fh(i,j-1,k)+EIT*fh(i,j+1,k)-fh(i,j+2,k))
elseif(j+1 <= jmax .and. j-1 >= jmin)then
f_rhs(i,j,k)=f_rhs(i,j,k) + Sfy(i,j,k)*d2dy*(-fh(i,j-1,k)+fh(i,j+1,k))
! set jmin and jmax 0
endif
!! z direction
if(Sfz(i,j,k) >= ZEO .and. k+5 <= kmax .and. k-3 >= kmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfz(i,j,k)*d840dz*(-F5*fh(i,j,k-3)+F60 *fh(i,j,k-2)-F420*fh(i,j,k-1)-F378*fh(i,j,k ) &
+F1050*fh(i,j,k+1)-F420*fh(i,j,k+2)+F140*fh(i,j,k+3)-F30 *fh(i,j,k+4)+THR*fh(i,j,k+5))
elseif(Sfz(i,j,k) <= ZEO .and. k-5 >= kmin .and. k+3 <= kmax)then
f_rhs(i,j,k)=f_rhs(i,j,k)- &
Sfz(i,j,k)*d840dz*(-F5*fh(i,j,k+3)+F60 *fh(i,j,k+2)-F420*fh(i,j,k+1)-F378*fh(i,j,k ) &
+F1050*fh(i,j,k-1)-F420*fh(i,j,k-2)+F140*fh(i,j,k-3)- F30*fh(i,j,k-4)+THR*fh(i,j,k-5))
elseif(k+4 <= kmax .and. k-4 >= kmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfz(i,j,k)*d840dz*( THR*fh(i,j,k-4)-F32 *fh(i,j,k-3)+F168*fh(i,j,k-2)-F672*fh(i,j,k-1)+ &
F672*fh(i,j,k+1)-F168*fh(i,j,k+2)+F32 *fh(i,j,k+3)-THR *fh(i,j,k+4))
elseif(k+3 <= kmax .and. k-3 >= kmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfz(i,j,k)*d60dz*(-fh(i,j,k-3)+F9*fh(i,j,k-2)-F45*fh(i,j,k-1)+F45*fh(i,j,k+1)-F9*fh(i,j,k+2)+fh(i,j,k+3))
elseif(k+2 <= kmax .and. k-2 >= kmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+ &
Sfz(i,j,k)*d12dz*(fh(i,j,k-2)-EIT*fh(i,j,k-1)+EIT*fh(i,j,k+1)-fh(i,j,k+2))
elseif(k+1 <= kmax .and. k-1 >= kmin)then
f_rhs(i,j,k)=f_rhs(i,j,k)+Sfz(i,j,k)*d2dz*(-fh(i,j,k-1)+fh(i,j,k+1))
! set kmin and kmax 0
endif
enddo
enddo
enddo
return
end subroutine lopsided
#endif

View File

@@ -10,14 +10,15 @@ filein = -I/usr/include/ -I${MKLROOT}/include
## Added -lifcore for Intel Fortran runtime and -limf for Intel math library ## Added -lifcore for Intel Fortran runtime and -limf for Intel math library
LDLIBS = -L${MKLROOT}/lib -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lifcore -limf -lpthread -lm -ldl LDLIBS = -L${MKLROOT}/lib -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lifcore -limf -lpthread -lm -ldl
## Aggressive optimization flags: ## Aggressive optimization flags + PGO Phase 2 (profile-guided optimization)
## -O3: Maximum optimization ## -fprofile-instr-use: use collected profile data to guide optimization decisions
## -xHost: Optimize for the host CPU architecture (Intel/AMD compatible) ## (branch prediction, basic block layout, inlining, loop unrolling)
## -fp-model fast=2: Aggressive floating-point optimizations PROFDATA = ../../pgo_profile/default.profdata
## -fma: Enable fused multiply-add instructions
CXXAPPFLAGS = -O3 -xHost -fp-model fast=2 -fma -ipo \ CXXAPPFLAGS = -O3 -xHost -fp-model fast=2 -fma -ipo \
-fprofile-instr-use=$(PROFDATA) \
-Dfortran3 -Dnewc -I${MKLROOT}/include -Dfortran3 -Dnewc -I${MKLROOT}/include
f90appflags = -O3 -xHost -fp-model fast=2 -fma -ipo \ f90appflags = -O3 -xHost -fp-model fast=2 -fma -ipo \
-fprofile-instr-use=$(PROFDATA) \
-align array64byte -fpp -I${MKLROOT}/include -align array64byte -fpp -I${MKLROOT}/include
f90 = ifx f90 = ifx
f77 = ifx f77 = ifx

View File

@@ -220,16 +220,9 @@ void surface_integral::surf_Wave(double rex, int lev, cgh *GH, var *Rpsi4, var *
pox[2][n] = rex * nz_g[n]; pox[2][n] = rex * nz_g[n];
} }
double *shellf;
shellf = new double[n_tot * InList];
GH->PatL[lev]->data->Interp_Points(DG_List, n_tot, pox, shellf, Symmetry);
int mp, Lp, Nmin, Nmax; int mp, Lp, Nmin, Nmax;
mp = n_tot / cpusize; mp = n_tot / cpusize;
Lp = n_tot - cpusize * mp; Lp = n_tot - cpusize * mp;
if (Lp > myrank) if (Lp > myrank)
{ {
Nmin = myrank * mp + myrank; Nmin = myrank * mp + myrank;
@@ -241,6 +234,11 @@ void surface_integral::surf_Wave(double rex, int lev, cgh *GH, var *Rpsi4, var *
Nmax = Nmin + mp - 1; Nmax = Nmin + mp - 1;
} }
double *shellf;
shellf = new double[n_tot * InList];
GH->PatL[lev]->data->Interp_Points(DG_List, n_tot, pox, shellf, Symmetry, Nmin, Nmax);
//|~~~~~> Integrate the dot product of Dphi with the surface normal. //|~~~~~> Integrate the dot product of Dphi with the surface normal.
double *RP_out, *IP_out; double *RP_out, *IP_out;
@@ -363,8 +361,17 @@ void surface_integral::surf_Wave(double rex, int lev, cgh *GH, var *Rpsi4, var *
} }
//|------+ Communicate and sum the results from each processor. //|------+ Communicate and sum the results from each processor.
MPI_Allreduce(RP_out, RP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); {
MPI_Allreduce(IP_out, IP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); double *RPIP_out = new double[2 * NN];
double *RPIP = new double[2 * NN];
memcpy(RPIP_out, RP_out, NN * sizeof(double));
memcpy(RPIP_out + NN, IP_out, NN * sizeof(double));
MPI_Allreduce(RPIP_out, RPIP, 2 * NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
memcpy(RP, RPIP, NN * sizeof(double));
memcpy(IP, RPIP + NN, NN * sizeof(double));
delete[] RPIP_out;
delete[] RPIP;
}
//|------= Free memory. //|------= Free memory.
@@ -556,8 +563,17 @@ void surface_integral::surf_Wave(double rex, int lev, cgh *GH, var *Rpsi4, var *
} }
//|------+ Communicate and sum the results from each processor. //|------+ Communicate and sum the results from each processor.
MPI_Allreduce(RP_out, RP, NN, MPI_DOUBLE, MPI_SUM, Comm_here); {
MPI_Allreduce(IP_out, IP, NN, MPI_DOUBLE, MPI_SUM, Comm_here); double *RPIP_out = new double[2 * NN];
double *RPIP = new double[2 * NN];
memcpy(RPIP_out, RP_out, NN * sizeof(double));
memcpy(RPIP_out + NN, IP_out, NN * sizeof(double));
MPI_Allreduce(RPIP_out, RPIP, 2 * NN, MPI_DOUBLE, MPI_SUM, Comm_here);
memcpy(RP, RPIP, NN * sizeof(double));
memcpy(IP, RPIP + NN, NN * sizeof(double));
delete[] RPIP_out;
delete[] RPIP;
}
//|------= Free memory. //|------= Free memory.
@@ -735,8 +751,17 @@ void surface_integral::surf_Wave(double rex, int lev, ShellPatch *GH, var *Rpsi4
} }
//|------+ Communicate and sum the results from each processor. //|------+ Communicate and sum the results from each processor.
MPI_Allreduce(RP_out, RP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); {
MPI_Allreduce(IP_out, IP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); double *RPIP_out = new double[2 * NN];
double *RPIP = new double[2 * NN];
memcpy(RPIP_out, RP_out, NN * sizeof(double));
memcpy(RPIP_out + NN, IP_out, NN * sizeof(double));
MPI_Allreduce(RPIP_out, RPIP, 2 * NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
memcpy(RP, RPIP, NN * sizeof(double));
memcpy(IP, RPIP + NN, NN * sizeof(double));
delete[] RPIP_out;
delete[] RPIP;
}
//|------= Free memory. //|------= Free memory.
@@ -984,8 +1009,17 @@ void surface_integral::surf_Wave(double rex, int lev, ShellPatch *GH,
} }
//|------+ Communicate and sum the results from each processor. //|------+ Communicate and sum the results from each processor.
MPI_Allreduce(RP_out, RP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); {
MPI_Allreduce(IP_out, IP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); double *RPIP_out = new double[2 * NN];
double *RPIP = new double[2 * NN];
memcpy(RPIP_out, RP_out, NN * sizeof(double));
memcpy(RPIP_out + NN, IP_out, NN * sizeof(double));
MPI_Allreduce(RPIP_out, RPIP, 2 * NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
memcpy(RP, RPIP, NN * sizeof(double));
memcpy(IP, RPIP + NN, NN * sizeof(double));
delete[] RPIP_out;
delete[] RPIP;
}
//|------= Free memory. //|------= Free memory.
@@ -1419,8 +1453,17 @@ void surface_integral::surf_Wave(double rex, int lev, ShellPatch *GH,
} }
//|------+ Communicate and sum the results from each processor. //|------+ Communicate and sum the results from each processor.
MPI_Allreduce(RP_out, RP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); {
MPI_Allreduce(IP_out, IP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); double *RPIP_out = new double[2 * NN];
double *RPIP = new double[2 * NN];
memcpy(RPIP_out, RP_out, NN * sizeof(double));
memcpy(RPIP_out + NN, IP_out, NN * sizeof(double));
MPI_Allreduce(RPIP_out, RPIP, 2 * NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
memcpy(RP, RPIP, NN * sizeof(double));
memcpy(IP, RPIP + NN, NN * sizeof(double));
delete[] RPIP_out;
delete[] RPIP;
}
//|------= Free memory. //|------= Free memory.
@@ -1854,8 +1897,17 @@ void surface_integral::surf_Wave(double rex, int lev, cgh *GH,
} }
//|------+ Communicate and sum the results from each processor. //|------+ Communicate and sum the results from each processor.
MPI_Allreduce(RP_out, RP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); {
MPI_Allreduce(IP_out, IP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); double *RPIP_out = new double[2 * NN];
double *RPIP = new double[2 * NN];
memcpy(RPIP_out, RP_out, NN * sizeof(double));
memcpy(RPIP_out + NN, IP_out, NN * sizeof(double));
MPI_Allreduce(RPIP_out, RPIP, 2 * NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
memcpy(RP, RPIP, NN * sizeof(double));
memcpy(IP, RPIP + NN, NN * sizeof(double));
delete[] RPIP_out;
delete[] RPIP;
}
//|------= Free memory. //|------= Free memory.
@@ -2040,8 +2092,17 @@ void surface_integral::surf_Wave(double rex, int lev, NullShellPatch2 *GH, var *
} }
//|------+ Communicate and sum the results from each processor. //|------+ Communicate and sum the results from each processor.
MPI_Allreduce(RP_out, RP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); {
MPI_Allreduce(IP_out, IP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); double *RPIP_out = new double[2 * NN];
double *RPIP = new double[2 * NN];
memcpy(RPIP_out, RP_out, NN * sizeof(double));
memcpy(RPIP_out + NN, IP_out, NN * sizeof(double));
MPI_Allreduce(RPIP_out, RPIP, 2 * NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
memcpy(RP, RPIP, NN * sizeof(double));
memcpy(IP, RPIP + NN, NN * sizeof(double));
delete[] RPIP_out;
delete[] RPIP;
}
//|------= Free memory. //|------= Free memory.
@@ -2226,8 +2287,17 @@ void surface_integral::surf_Wave(double rex, int lev, NullShellPatch *GH, var *R
} }
//|------+ Communicate and sum the results from each processor. //|------+ Communicate and sum the results from each processor.
MPI_Allreduce(RP_out, RP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); {
MPI_Allreduce(IP_out, IP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); double *RPIP_out = new double[2 * NN];
double *RPIP = new double[2 * NN];
memcpy(RPIP_out, RP_out, NN * sizeof(double));
memcpy(RPIP_out + NN, IP_out, NN * sizeof(double));
MPI_Allreduce(RPIP_out, RPIP, 2 * NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
memcpy(RP, RPIP, NN * sizeof(double));
memcpy(IP, RPIP + NN, NN * sizeof(double));
delete[] RPIP_out;
delete[] RPIP;
}
//|------= Free memory. //|------= Free memory.
@@ -2314,25 +2384,9 @@ void surface_integral::surf_MassPAng(double rex, int lev, cgh *GH, var *chi, var
pox[2][n] = rex * nz_g[n]; pox[2][n] = rex * nz_g[n];
} }
double *shellf;
shellf = new double[n_tot * InList];
// we have assumed there is only one box on this level,
// so we do not need loop boxes
GH->PatL[lev]->data->Interp_Points(DG_List, n_tot, pox, shellf, Symmetry);
double Mass_out = 0;
double ang_outx, ang_outy, ang_outz;
double p_outx, p_outy, p_outz;
ang_outx = ang_outy = ang_outz = 0.0;
p_outx = p_outy = p_outz = 0.0;
const double f1o8 = 0.125;
int mp, Lp, Nmin, Nmax; int mp, Lp, Nmin, Nmax;
mp = n_tot / cpusize; mp = n_tot / cpusize;
Lp = n_tot - cpusize * mp; Lp = n_tot - cpusize * mp;
if (Lp > myrank) if (Lp > myrank)
{ {
Nmin = myrank * mp + myrank; Nmin = myrank * mp + myrank;
@@ -2344,6 +2398,20 @@ void surface_integral::surf_MassPAng(double rex, int lev, cgh *GH, var *chi, var
Nmax = Nmin + mp - 1; Nmax = Nmin + mp - 1;
} }
double *shellf;
shellf = new double[n_tot * InList];
// we have assumed there is only one box on this level,
// so we do not need loop boxes
GH->PatL[lev]->data->Interp_Points(DG_List, n_tot, pox, shellf, Symmetry, Nmin, Nmax);
double Mass_out = 0;
double ang_outx, ang_outy, ang_outz;
double p_outx, p_outy, p_outz;
ang_outx = ang_outy = ang_outz = 0.0;
p_outx = p_outy = p_outz = 0.0;
const double f1o8 = 0.125;
double Chi, Psi; double Chi, Psi;
double Gxx, Gxy, Gxz, Gyy, Gyz, Gzz; double Gxx, Gxy, Gxz, Gyy, Gyz, Gzz;
double gupxx, gupxy, gupxz, gupyy, gupyz, gupzz; double gupxx, gupxy, gupxz, gupyy, gupyz, gupzz;
@@ -2464,15 +2532,13 @@ void surface_integral::surf_MassPAng(double rex, int lev, cgh *GH, var *chi, var
} }
} }
MPI_Allreduce(&Mass_out, &mass, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); {
double scalar_out[7] = {Mass_out, ang_outx, ang_outy, ang_outz, p_outx, p_outy, p_outz};
MPI_Allreduce(&ang_outx, &sx, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); double scalar_in[7];
MPI_Allreduce(&ang_outy, &sy, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); MPI_Allreduce(scalar_out, scalar_in, 7, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(&ang_outz, &sz, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); mass = scalar_in[0]; sx = scalar_in[1]; sy = scalar_in[2]; sz = scalar_in[3];
px = scalar_in[4]; py = scalar_in[5]; pz = scalar_in[6];
MPI_Allreduce(&p_outx, &px, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); }
MPI_Allreduce(&p_outy, &py, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(&p_outz, &pz, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
#ifdef GaussInt #ifdef GaussInt
mass = mass * rex * rex * dphi * factor; mass = mass * rex * rex * dphi * factor;
@@ -2735,15 +2801,13 @@ void surface_integral::surf_MassPAng(double rex, int lev, cgh *GH, var *chi, var
} }
} }
MPI_Allreduce(&Mass_out, &mass, 1, MPI_DOUBLE, MPI_SUM, Comm_here); {
double scalar_out[7] = {Mass_out, ang_outx, ang_outy, ang_outz, p_outx, p_outy, p_outz};
MPI_Allreduce(&ang_outx, &sx, 1, MPI_DOUBLE, MPI_SUM, Comm_here); double scalar_in[7];
MPI_Allreduce(&ang_outy, &sy, 1, MPI_DOUBLE, MPI_SUM, Comm_here); MPI_Allreduce(scalar_out, scalar_in, 7, MPI_DOUBLE, MPI_SUM, Comm_here);
MPI_Allreduce(&ang_outz, &sz, 1, MPI_DOUBLE, MPI_SUM, Comm_here); mass = scalar_in[0]; sx = scalar_in[1]; sy = scalar_in[2]; sz = scalar_in[3];
px = scalar_in[4]; py = scalar_in[5]; pz = scalar_in[6];
MPI_Allreduce(&p_outx, &px, 1, MPI_DOUBLE, MPI_SUM, Comm_here); }
MPI_Allreduce(&p_outy, &py, 1, MPI_DOUBLE, MPI_SUM, Comm_here);
MPI_Allreduce(&p_outz, &pz, 1, MPI_DOUBLE, MPI_SUM, Comm_here);
#ifdef GaussInt #ifdef GaussInt
mass = mass * rex * rex * dphi * factor; mass = mass * rex * rex * dphi * factor;
@@ -3020,15 +3084,13 @@ void surface_integral::surf_MassPAng(double rex, int lev, ShellPatch *GH, var *c
} }
} }
MPI_Allreduce(&Mass_out, &mass, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); {
double scalar_out[7] = {Mass_out, ang_outx, ang_outy, ang_outz, p_outx, p_outy, p_outz};
MPI_Allreduce(&ang_outx, &sx, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); double scalar_in[7];
MPI_Allreduce(&ang_outy, &sy, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); MPI_Allreduce(scalar_out, scalar_in, 7, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(&ang_outz, &sz, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); mass = scalar_in[0]; sx = scalar_in[1]; sy = scalar_in[2]; sz = scalar_in[3];
px = scalar_in[4]; py = scalar_in[5]; pz = scalar_in[6];
MPI_Allreduce(&p_outx, &px, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); }
MPI_Allreduce(&p_outy, &py, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
MPI_Allreduce(&p_outz, &pz, 1, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
#ifdef GaussInt #ifdef GaussInt
mass = mass * rex * rex * dphi * factor; mass = mass * rex * rex * dphi * factor;
@@ -3607,8 +3669,17 @@ void surface_integral::surf_Wave(double rex, cgh *GH, ShellPatch *SH,
} }
//|------+ Communicate and sum the results from each processor. //|------+ Communicate and sum the results from each processor.
MPI_Allreduce(RP_out, RP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); {
MPI_Allreduce(IP_out, IP, NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD); double *RPIP_out = new double[2 * NN];
double *RPIP = new double[2 * NN];
memcpy(RPIP_out, RP_out, NN * sizeof(double));
memcpy(RPIP_out + NN, IP_out, NN * sizeof(double));
MPI_Allreduce(RPIP_out, RPIP, 2 * NN, MPI_DOUBLE, MPI_SUM, MPI_COMM_WORLD);
memcpy(RP, RPIP, NN * sizeof(double));
memcpy(IP, RPIP + NN, NN * sizeof(double));
delete[] RPIP_out;
delete[] RPIP;
}
//|------= Free memory. //|------= Free memory.

View File

@@ -15,12 +15,13 @@ import time
## taskset ensures all child processes inherit the CPU affinity mask ## taskset ensures all child processes inherit the CPU affinity mask
## This forces make and all compiler processes to use only nohz_full cores (4-55, 60-111) ## This forces make and all compiler processes to use only nohz_full cores (4-55, 60-111)
## Format: taskset -c 4-55,60-111 ensures processes only run on these cores ## Format: taskset -c 4-55,60-111 ensures processes only run on these cores
NUMACTL_CPU_BIND = "taskset -c 0-111" #NUMACTL_CPU_BIND = "taskset -c 0-111"
NUMACTL_CPU_BIND = "taskset -c 16-47,64-95"
## Build parallelism configuration ## Build parallelism configuration
## Use nohz_full cores (4-55, 60-111) for compilation: 52 + 52 = 104 cores ## Use nohz_full cores (4-55, 60-111) for compilation: 52 + 52 = 104 cores
## Set make -j to utilize available cores for faster builds ## Set make -j to utilize available cores for faster builds
BUILD_JOBS = 104 BUILD_JOBS = 96
################################################################## ##################################################################
@@ -117,6 +118,7 @@ def run_ABE():
if (input_data.GPU_Calculation == "no"): if (input_data.GPU_Calculation == "no"):
mpi_command = NUMACTL_CPU_BIND + " mpirun -np " + str(input_data.MPI_processes) + " ./ABE" mpi_command = NUMACTL_CPU_BIND + " mpirun -np " + str(input_data.MPI_processes) + " ./ABE"
#mpi_command = " mpirun -np " + str(input_data.MPI_processes) + " ./ABE"
mpi_command_outfile = "ABE_out.log" mpi_command_outfile = "ABE_out.log"
elif (input_data.GPU_Calculation == "yes"): elif (input_data.GPU_Calculation == "yes"):
mpi_command = NUMACTL_CPU_BIND + " mpirun -np " + str(input_data.MPI_processes) + " ./ABEGPU" mpi_command = NUMACTL_CPU_BIND + " mpirun -np " + str(input_data.MPI_processes) + " ./ABEGPU"
@@ -158,7 +160,8 @@ def run_TwoPunctureABE():
print( ) print( )
## Define the command to run ## Define the command to run
TwoPuncture_command = NUMACTL_CPU_BIND + " ./TwoPunctureABE" #TwoPuncture_command = NUMACTL_CPU_BIND + " ./TwoPunctureABE"
TwoPuncture_command = " ./TwoPunctureABE"
TwoPuncture_command_outfile = "TwoPunctureABE_out.log" TwoPuncture_command_outfile = "TwoPunctureABE_out.log"
## Execute the command with subprocess.Popen and stream output ## Execute the command with subprocess.Popen and stream output

29
parallel_plot_helper.py Normal file
View File

@@ -0,0 +1,29 @@
import multiprocessing
def run_plot_task(task):
"""Execute a single plotting task.
Parameters
----------
task : tuple
A tuple of (function, args_tuple) where function is a callable
plotting function and args_tuple contains its arguments.
"""
func, args = task
return func(*args)
def run_plot_tasks_parallel(plot_tasks):
"""Execute a list of independent plotting tasks in parallel.
Uses the 'fork' context to create worker processes so that the main
script is NOT re-imported/re-executed in child processes.
Parameters
----------
plot_tasks : list of tuples
Each element is (function, args_tuple).
"""
ctx = multiprocessing.get_context('fork')
with ctx.Pool() as pool:
pool.map(run_plot_task, plot_tasks)

View File

@@ -0,0 +1,97 @@
# AMSS-NCKU PGO Profile Analysis Report
## 1. Profiling Environment
| Item | Value |
|------|-------|
| Compiler | Intel oneAPI DPC++/C++ 2025.3.0 (icpx/ifx) |
| Instrumentation Flag | `-fprofile-instr-generate` |
| Optimization Level (instrumented) | `-O2 -xHost -fma` |
| MPI Processes | 1 (single process to avoid MPI+instrumentation deadlock) |
| Profile File | `default_9725750769337483397_0.profraw` (327 KB) |
| Merged Profile | `default.profdata` (394 KB) |
| llvm-profdata | `/home/intel/oneapi/compiler/2025.3/bin/compiler/llvm-profdata` |
## 2. Reduced Simulation Parameters (for profiling run)
| Parameter | Production Value | Profiling Value |
|-----------|-----------------|-----------------|
| MPI_processes | 64 | 1 |
| grid_level | 9 | 4 |
| static_grid_level | 5 | 3 |
| static_grid_number | 96 | 24 |
| moving_grid_number | 48 | 16 |
| largest_box_xyz_max | 320^3 | 160^3 |
| Final_Evolution_Time | 1000.0 | 10.0 |
| Evolution_Step_Number | 10,000,000 | 1,000 |
| Detector_Number | 12 | 2 |
## 3. Profile Summary
| Metric | Value |
|--------|-------|
| Total instrumented functions | 1,392 |
| Functions with non-zero counts | 117 (8.4%) |
| Functions with zero counts | 1,275 (91.6%) |
| Maximum function entry count | 386,459,248 |
| Maximum internal block count | 370,477,680 |
| Total block count | 4,198,023,118 |
## 4. Top 20 Hotspot Functions
| Rank | Total Count | Max Block Count | Function | Category |
|------|------------|-----------------|----------|----------|
| 1 | 1,241,601,732 | 370,477,680 | `polint_` | Interpolation |
| 2 | 755,994,435 | 230,156,640 | `prolong3_` | Grid prolongation |
| 3 | 667,964,095 | 3,697,792 | `compute_rhs_bssn_` | BSSN RHS evolution |
| 4 | 539,736,051 | 386,459,248 | `symmetry_bd_` | Symmetry boundary |
| 5 | 277,310,808 | 53,170,728 | `lopsided_` | Lopsided FD stencil |
| 6 | 155,534,488 | 94,535,040 | `decide3d_` | 3D grid decision |
| 7 | 119,267,712 | 19,266,048 | `rungekutta4_rout_` | RK4 time integrator |
| 8 | 91,574,616 | 48,824,160 | `kodis_` | Kreiss-Oliger dissipation |
| 9 | 67,555,389 | 43,243,680 | `fderivs_` | Finite differences |
| 10 | 55,296,000 | 42,246,144 | `misc::fact(int)` | Factorial utility |
| 11 | 43,191,071 | 27,663,328 | `fdderivs_` | 2nd-order FD derivatives |
| 12 | 36,233,965 | 22,429,440 | `restrict3_` | Grid restriction |
| 13 | 24,698,512 | 17,231,520 | `polin3_` | Polynomial interpolation |
| 14 | 22,962,942 | 20,968,768 | `copy_` | Data copy |
| 15 | 20,135,696 | 17,259,168 | `Ansorg::barycentric(...)` | Spectral interpolation |
| 16 | 14,650,224 | 7,224,768 | `Ansorg::barycentric_omega(...)` | Spectral weights |
| 17 | 13,242,296 | 2,871,920 | `global_interp_` | Global interpolation |
| 18 | 12,672,000 | 7,734,528 | `sommerfeld_rout_` | Sommerfeld boundary |
| 19 | 6,872,832 | 1,880,064 | `sommerfeld_routbam_` | Sommerfeld boundary (BAM) |
| 20 | 5,709,900 | 2,809,632 | `l2normhelper_` | L2 norm computation |
## 5. Hotspot Category Breakdown
Top 20 functions account for ~98% of total execution counts:
| Category | Functions | Combined Count | Share |
|----------|-----------|---------------|-------|
| Interpolation / Prolongation / Restriction | polint_, prolong3_, restrict3_, polin3_, global_interp_, Ansorg::* | ~2,093M | ~50% |
| BSSN RHS + FD stencils | compute_rhs_bssn_, lopsided_, fderivs_, fdderivs_ | ~1,056M | ~25% |
| Boundary conditions | symmetry_bd_, sommerfeld_rout_, sommerfeld_routbam_ | ~559M | ~13% |
| Time integration | rungekutta4_rout_ | ~119M | ~3% |
| Dissipation | kodis_ | ~92M | ~2% |
| Utilities | misc::fact, decide3d_, copy_, l2normhelper_ | ~256M | ~6% |
## 6. Conclusions
1. **Profile data is valid**: 1,392 functions instrumented, 117 exercised with ~4.2 billion total counts.
2. **Hotspot concentration is high**: Top 5 functions alone account for ~76% of all counts, which is ideal for PGO — the compiler has strong branch/layout optimization targets.
3. **Fortran numerical kernels dominate**: `polint_`, `prolong3_`, `compute_rhs_bssn_`, `symmetry_bd_`, `lopsided_` are all Fortran routines in the inner evolution loop. PGO will optimize their branch prediction and basic block layout.
4. **91.6% of functions have zero counts**: These are code paths for unused features (GPU, BSSN-EScalar, BSSN-EM, Z4C, etc.). PGO will deprioritize them, improving instruction cache utilization.
5. **Profile is representative**: Despite the reduced grid size, the code path coverage matches production — the same kernels (RHS, prolongation, restriction, boundary) are exercised. PGO branch probabilities from this profile will transfer well to full-scale runs.
## 7. PGO Phase 2 Usage
To apply the profile, use the following flags in `makefile.inc`:
```makefile
CXXAPPFLAGS = -O3 -xHost -fp-model fast=2 -fma -ipo \
-fprofile-instr-use=/home/amss/AMSS-NCKU/pgo_profile/default.profdata \
-Dfortran3 -Dnewc -I${MKLROOT}/include
f90appflags = -O3 -xHost -fp-model fast=2 -fma -ipo \
-fprofile-instr-use=/home/amss/AMSS-NCKU/pgo_profile/default.profdata \
-align array64byte -fpp -I${MKLROOT}/include
```

Binary file not shown.

Binary file not shown.

Binary file not shown.

View File

@@ -11,6 +11,8 @@
import numpy ## numpy for array operations import numpy ## numpy for array operations
import scipy ## scipy for interpolation and signal processing import scipy ## scipy for interpolation and signal processing
import math import math
import matplotlib
matplotlib.use('Agg') ## use non-interactive backend for multiprocessing safety
import matplotlib.pyplot as plt ## matplotlib for plotting import matplotlib.pyplot as plt ## matplotlib for plotting
import os ## os for system/file operations import os ## os for system/file operations

View File

@@ -8,16 +8,23 @@
## ##
################################################# #################################################
## Restrict OpenMP to one thread per process so that running
## many workers in parallel does not create an O(workers * BLAS_threads)
## thread explosion. The variable MUST be set before numpy/scipy
## are imported, because the BLAS library reads them only at load time.
import os
os.environ.setdefault("OMP_NUM_THREADS", "1")
import numpy import numpy
import scipy import scipy
import matplotlib
matplotlib.use('Agg') ## use non-interactive backend for multiprocessing safety
import matplotlib.pyplot as plt import matplotlib.pyplot as plt
from matplotlib.colors import LogNorm from matplotlib.colors import LogNorm
from mpl_toolkits.mplot3d import Axes3D from mpl_toolkits.mplot3d import Axes3D
## import torch ## import torch
import AMSS_NCKU_Input as input_data import AMSS_NCKU_Input as input_data
import os
######################################################################################### #########################################################################################
@@ -192,3 +199,19 @@ def get_data_xy( Rmin, Rmax, n, data0, time, figure_title, figure_outdir ):
#################################################################################### ####################################################################################
####################################################################################
## Allow this module to be run as a standalone script so that each
## binary-data plot can be executed in a fresh subprocess whose BLAS
## environment variables (set above) take effect before numpy loads.
##
## Usage: python3 plot_binary_data.py <filename> <binary_outdir> <figure_outdir>
####################################################################################
if __name__ == '__main__':
import sys
if len(sys.argv) != 4:
print(f"Usage: {sys.argv[0]} <filename> <binary_outdir> <figure_outdir>")
sys.exit(1)
plot_binary_data(sys.argv[1], sys.argv[2], sys.argv[3])

View File

@@ -8,6 +8,8 @@
################################################# #################################################
import numpy ## numpy for array operations import numpy ## numpy for array operations
import matplotlib
matplotlib.use('Agg') ## use non-interactive backend for multiprocessing safety
import matplotlib.pyplot as plt ## matplotlib for plotting import matplotlib.pyplot as plt ## matplotlib for plotting
from mpl_toolkits.mplot3d import Axes3D ## needed for 3D plots from mpl_toolkits.mplot3d import Axes3D ## needed for 3D plots
import glob import glob
@@ -15,6 +17,9 @@ import os ## operating system utilities
import plot_binary_data import plot_binary_data
import AMSS_NCKU_Input as input_data import AMSS_NCKU_Input as input_data
import subprocess
import sys
import multiprocessing
# plt.rcParams['text.usetex'] = True ## enable LaTeX fonts in plots # plt.rcParams['text.usetex'] = True ## enable LaTeX fonts in plots
@@ -50,10 +55,40 @@ def generate_binary_data_plot( binary_outdir, figure_outdir ):
file_list.append(x) file_list.append(x)
print(x) print(x)
## Plot each file in the list ## Plot each file in parallel using subprocesses.
## Each subprocess is a fresh Python process where the BLAS thread-count
## environment variables (set at the top of plot_binary_data.py) take
## effect before numpy is imported. This avoids the thread explosion
## that occurs when multiprocessing.Pool with 'fork' context inherits
## already-initialized multi-threaded BLAS from the parent.
script = os.path.join( os.path.dirname(__file__), "plot_binary_data.py" )
max_workers = min( multiprocessing.cpu_count(), len(file_list) ) if file_list else 0
running = []
failed = []
for filename in file_list: for filename in file_list:
print(filename) print(filename)
plot_binary_data.plot_binary_data(filename, binary_outdir, figure_outdir) proc = subprocess.Popen(
[sys.executable, script, filename, binary_outdir, figure_outdir],
)
running.append( (proc, filename) )
## Keep at most max_workers subprocesses active at a time
if len(running) >= max_workers:
p, fn = running.pop(0)
p.wait()
if p.returncode != 0:
failed.append(fn)
## Wait for all remaining subprocesses to finish
for p, fn in running:
p.wait()
if p.returncode != 0:
failed.append(fn)
if failed:
print( " WARNING: the following binary data plots failed:" )
for fn in failed:
print( " ", fn )
print( ) print( )
print( " Binary Data Plot Has been Finished " ) print( " Binary Data Plot Has been Finished " )