asc26 amss-ncku initialized

2026-01-13 15:01:15 +08:00
commit f2fc9af70e
272 changed files with 262274 additions and 0 deletions
--- a/AMSS_NCKU_source/cpm_map.C
+++ b/AMSS_NCKU_source/cpm_map.C
@@ -0,0 +1,93 @@
+#include <assert.h>
+#include <stdio.h>
+
+#include "stdc.h"
+#include "util.h"
+#include "cpm_map.h"
+
+namespace AHFinderDirect
+{
+	namespace jtutil
+	{
+
+		template <typename fp_t>
+		cpm_map<fp_t>::cpm_map(int min_i_in, int max_i_in,
+							   fp_t fixed_point)
+			: min_i_(min_i_in), max_i_(max_i_in),
+			  map_is_plus_(false)
+		{
+			const fp_t d_offset = 2.0 * fixed_point;
+			if (!fuzzy<fp_t>::is_integer(d_offset))
+				then error_exit(ERROR_EXIT,
+								"***** cpm_map::cpm_map (mirror):\n"
+								"        fixed_point=%g isn't (fuzzily) integral or half-integral!\n",
+								double(fixed_point)); /*NOTREACHED*/
+
+			offset_ = round<fp_t>::to_integer(d_offset);
+
+			assert(
+				map_unchecked(fuzzy<fp_t>::floor(fixed_point)) ==
+				fuzzy<fp_t>::ceiling(fixed_point));
+		}
+
+		//******************************************************************************
+
+		//
+		// This function constructs a generic  cpm_map  object, with the mapping
+		// specified by a sample point  sample_i --> sample_j  and by sign.
+		// The sample point need not be in the map's domain/range.
+		//
+		template <typename fp_t>
+		cpm_map<fp_t>::cpm_map(int min_i_in, int max_i_in,
+							   int sample_i, int sample_j,
+							   bool map_is_plus_in)
+			: min_i_(min_i_in), max_i_(max_i_in),
+			  offset_(map_is_plus_in ? sample_j - sample_i
+									 : sample_j + sample_i),
+			  map_is_plus_(map_is_plus_in)
+		{
+			assert(map_unchecked(sample_i) == sample_j);
+		}
+
+		//******************************************************************************
+
+		//
+		// This function constructs a generic  cpm_map  object, with the mapping
+		// specified by a *fp* sample point  sample_i --> sample_j  (which
+		// must specify an  integer --> integer  mapping, i.e.  4.2 --> 4.2  is
+		// ok for a + map, and 4.5 --> 4.5 is ok for a minus map, but  4.2 --> 4.7
+		// is never ok) and by sign.  The sample point need not be in the map's
+		// domain/range.
+		//
+		template <typename fp_t>
+		cpm_map<fp_t>::cpm_map(int min_i_in, int max_i_in,
+							   fp_t sample_i, fp_t sample_j,
+							   bool map_is_plus_in)
+			: min_i_(min_i_in), max_i_(max_i_in),
+			  map_is_plus_(map_is_plus_in)
+		{
+			const fp_t fp_offset = map_is_plus_in ? sample_j - sample_i
+												  : sample_j + sample_i;
+			if (!fuzzy<fp_t>::is_integer(fp_offset))
+				then error_exit(ERROR_EXIT,
+								"***** cpm_map::cpm_map (generic via fp sample point):\n"
+								"        fp_offset=%g isn't fuzzily integral!\n"
+								"        ==> sample_i=%g --> sample_j=%g\n"
+								"            doesn't fuzzily specify an  integer --> integer  mapping!\n",
+								double(fp_offset),
+								double(sample_i), double(sample_j)); /*NOTREACHED*/
+
+			offset_ = round<fp_t>::to_integer(fp_offset);
+
+			// verify that we have setup correct
+			assert(
+				map_unchecked(fuzzy<fp_t>::floor(sample_i)) ==
+				(map_is_plus_in ? fuzzy<fp_t>::floor(sample_j)
+								: fuzzy<fp_t>::ceiling(sample_j)));
+		}
+
+		template class cpm_map<float>;
+		template class cpm_map<double>;
+
+	} // namespace jtutil
+} // namespace AHFinderDirect